| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP025268 | 1,690,360 | (C)5→6 | pseudogene (1047/1403 nt) | fumC ← | class II fumarate hydratase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP025268 | 1,690,355 | 1 | . | C | 95.7% | 1123.9 / 38.4 | 349 | pseudogene (1052/1403 nt) | fumC | class II fumarate hydratase |
| Reads supporting (aligned to +/- strand): ref base . (9/6); new base C (155/179); total (164/185) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.29e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 369 total aligned reads displayed.
TTCGCTCACGATTCGGTTCAATACCCACTGCGCAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCG‑CC‑C‑C‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCATGATTGAGCTGCCCGGCTCATTTTCCGGGATTGAGATTTCAC > NZ_CP025268/1690216‑1690487 | ttCGCTCACGATTCGGTTCAATACCCACTGCGCAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAgcg < 1:3284901/140‑1 (MQ=255)ttCGCTCACGATTCGGTTCAATACCCACTGCGCAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAgcg < 2:1494460/140‑1 (MQ=255)ttCGCTCACGATTCGGTTCAATACCCACTGCGCAGTGTTTGTTAAAACGTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGGGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAgcg < 1:3157412/140‑1 (MQ=255) tCGCTCACGATTCGGTTCAATACCCACTGCGCAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAgcg‑c < 2:4088974/140‑1 (MQ=255) cTCACGATTCGGTTCAATACCCACTGCGCAGTGTTTGTTAAAACTTTCCATGCCCTCCGCCAGCAAGCGCACCGATTGCAGGAAATTGTAGATCAACATTGGACGGACGACGTTCAGTGCAAAGTTACCGGAAGCA‑cc‑c‑c > 2:3669432/1‑140 (MQ=255) cTCACGATTCGGTTCAATACCCACTGCGCAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCG‑cc‑c‑c > 2:630294/1‑140 (MQ=255) cTCACGATTCGGTTCAATACCCACTGCGCAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCG‑cc‑c‑c < 1:3386664/140‑1 (MQ=255) cTCACGATTCGGTTCAATACCCACTGCGCAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCG‑cc‑c‑c < 1:3271471/140‑1 (MQ=255) tCACGATTCGGTTCAATACCCACTGCGCAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCACGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCG‑cg‑c‑c‑c > 2:3187449/1‑140 (MQ=255) gATTCGGTTCAATACCCACTGCGCAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCG‑cc‑c‑c‑ccatg < 2:2370954/140‑5 (MQ=255) ggTTCAATACCCACTGCGCAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCCC‑C‑C‑CATGTTGAt < 2:1973479/140‑1 (MQ=255) ggTTCAATACCCACTGCGCAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCCC‑C‑C‑CATGTTGAt > 1:417071/1‑140 (MQ=255) tACCCACTGCGCAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCCC‑C‑C‑CATGTTGATCGCCAcg > 1:4520657/1‑140 (MQ=255) tACCCACTGCGCAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCCC‑C‑C‑CATGTTGATCGCCAcg < 1:184497/140‑1 (MQ=255) ccACTGCGCAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGTAGACGTTCAGTTCAAAGTTACCGGAAGCGCCC‑C‑C‑CATGTTGATCGCCAcgtcg < 2:3042338/140‑1 (MQ=255) aCTGCGCAGTTTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCTGTTTCAGGAAATGGTGGATCACCATTTGACGGTAGACGTTCAGTTCAAAGTTTCCGGAATCGCCC‑C‑C‑CATGGTGATCGCCACGTCGtt > 2:1433462/1‑140 (MQ=255) aCTGCGCAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCCC‑C‑C‑CATGTTGATCGCCACGTCGtt > 2:3484897/1‑140 (MQ=255) aCTGCGCAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCCC‑C‑C‑CATGTTGATCGCCACGTCGtt > 1:4775561/1‑140 (MQ=255) aCTGCGCAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCCC‑C‑C‑CATGTTGATCGCCACGTCGtt > 1:4033170/1‑140 (MQ=255) aCTGCGCAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCCC‑C‑C‑CATGTTGATCGCCACGTCGtt > 1:2758967/1‑140 (MQ=255) aCTGCGCAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCCC‑C‑C‑CATGTTGATCGCCACGTCGtt > 1:5090343/1‑140 (MQ=255) aCTGCGCAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCCC‑C‑C‑CATGTTGATCCCCACGTCGtt > 1:3108828/1‑140 (MQ=255) aCTGCGCAGTGTTGGGTAAAACTTTCCATGCCATCTGCCAGCAAGCGCGCCGATGTCATGGAATTGTGGATCACCATTGGACGGAAGACGTTCAGAGCAAAGTTACCCTAAGCGCCC‑C‑C‑CATGTTGATCGCCAcggctgt > 2:3238413/1‑135 (MQ=255) cTGCGCAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCCC‑C‑C‑CATGTTGATCGCCACGTCGTTc < 1:2587583/140‑1 (MQ=255) tGCGCAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCCC‑C‑C‑CATGTTGATCGCCACGTCGTTcc > 1:1345904/1‑140 (MQ=255) tGCGCAGTGTTTGTTAAAACTTTCCATGCCAGCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCCC‑C‑C‑CATGTTGATCGCCACGTCGTTcc > 2:3888047/1‑140 (MQ=255) gcgcAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCCC‑C‑C‑CATGTTGATCGCCACGTCGTTccc > 2:3535461/1‑140 (MQ=255) gcgcAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCCC‑C‑C‑CATGTTGATCGCCACGTCGTTccc < 2:4143812/140‑1 (MQ=255) gcgcAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCCC‑C‑C‑CATGTTGATCGCCACGTCGTTccc > 2:1304290/1‑140 (MQ=255) gcgcAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCCC‑C‑C‑CATGTTGATCGCCACGTCGTTccc > 1:285426/1‑140 (MQ=255) gcgcAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCCC‑C‑C‑CATGTTGATCGCCACGTCGTTccc > 1:2299017/1‑140 (MQ=255) gcgcAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCCC‑C‑C‑CATGTTGATCGCCACGTCGTTccc < 1:127779/140‑1 (MQ=255) aGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCCC‑C‑C‑CATGTTGATCGCCACGTCGTTCCCCATc > 1:4638108/1‑140 (MQ=255) tgtttgttAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAATACGTTCAGTTCAAAGTTACCGGAAGCGCCC‑C‑C‑CATGTTGATCGCCACGTCGTTCCCCATCAc > 2:4504082/1‑140 (MQ=255) tgtttgttAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCCC‑C‑C‑CATGTTGATCGCCACGTCGTTCCCCATCAc > 2:1848984/1‑140 (MQ=255) gttAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCCC‑C‑C‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGAc > 2:4657878/1‑140 (MQ=255) gttAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCCC‑C‑C‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGAc > 1:2652244/1‑140 (MQ=255) tAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCCC‑C‑C‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGAcag < 2:328986/140‑1 (MQ=255) aaaCTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCCC‑C‑C‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGAcagca < 1:399681/140‑1 (MQ=255) aaCTTTCCATGCCATCTGCCAGCAAGCGGATCGATTGCAGGAAATTGTGGATCACCATTCGACGGAAGACGTTCAGGTCAAAGTTACCGGAAGCG‑CC‑C‑CACATGTTGATCGACACATCGTTCCCCATCACCTGAcagcag > 2:2591397/1‑140 (MQ=255) aaCTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCCC‑C‑C‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGAcagcag > 1:81483/1‑140 (MQ=255) aaCTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCCC‑C‑C‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGAcagcag > 1:1507838/1‑140 (MQ=255) aaCTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCCC‑C‑C‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGAcagcag > 1:4815274/1‑140 (MQ=255) aaCTTTCCATGCCATCTGCCAGCAAGCGCAACGATTGCAGGAAATTGTGGATCACCATTGAACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCCC‑C‑C‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGAcagcag > 2:2692004/1‑140 (MQ=255) cTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCCC‑C‑C‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCagag > 1:1043456/1‑140 (MQ=255) tttCCATGCCATCTGCCAGCAAGCGGACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCCC‑C‑C‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGc < 2:775732/140‑1 (MQ=255) tttCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCCC‑C‑C‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGc < 2:2758967/140‑1 (MQ=255) tttCCATGCCATCTGACAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCCC‑C‑C‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGc < 2:1783165/140‑1 (MQ=255) ttCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCCC‑C‑C‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCa < 1:592842/140‑1 (MQ=255) ttCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGGTCAGTTCAAAGTTACCGGAAGCGCCC‑C‑C‑CATGTTGATCGCCACGTCGTTGCCCATCACCTGACAGCAGAGCa > 1:1708383/1‑140 (MQ=255) tCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCCC‑C‑C‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCAt > 2:240240/1‑140 (MQ=255) gCCATCTGCCAGCAAGCGCACCGCTTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCCC‑C‑C‑CATGTTTATCGCTACGTCGTTGCCCATCATCTGACCGCAGAGCATGGTTa < 2:2506233/140‑1 (MQ=255) gCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCCC‑C‑C‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTa < 1:492169/140‑1 (MQ=255) gCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCCC‑C‑C‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTa < 2:834695/140‑1 (MQ=255) gCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCCC‑C‑C‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTa < 1:1441445/140‑1 (MQ=255) gCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCCC‑C‑C‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTa < 2:2806950/140‑1 (MQ=255) gCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCCC‑C‑C‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTa < 2:4721009/140‑1 (MQ=255) gCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCCC‑C‑C‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTa < 1:2244187/140‑1 (MQ=255) gCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCCC‑C‑C‑CATGTTGATCGCCACGTCGTTCCCCACCACCTGACAGCAGAGCATGGTTa < 2:2945737/140‑1 (MQ=255) gCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTGCAGTTCAAAGTTACCGGAAGCGCCC‑C‑C‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTa < 1:4967439/140‑1 (MQ=255) gCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCAGTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCCC‑C‑C‑CAGGTTGAGCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTa < 1:4328804/140‑1 (MQ=255) gCCATCTGCAAGCAAGCGCACCGACTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCCC‑C‑C‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTa < 2:4750604/140‑1 (MQ=255) cATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCCC‑C‑C‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAAt < 1:1955854/140‑1 (MQ=255) cATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCCC‑C‑C‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAAt < 2:1668767/140‑1 (MQ=255) cTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCCC‑C‑C‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGcc < 1:2910590/140‑1 (MQ=255) cTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCCC‑C‑C‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGcc < 1:350739/140‑1 (MQ=255) cAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCCC‑C‑C‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTcac < 1:4456564/140‑1 (MQ=255) aGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCCC‑C‑C‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTcaca < 2:4928741/140‑1 (MQ=255) aGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCCC‑C‑C‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTcaca < 1:3671000/140‑1 (MQ=255) aGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCCC‑C‑C‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTcaca < 1:3864650/140‑1 (MQ=255) aGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCCC‑C‑C‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCAGGGTTAATGCCTcaca < 1:1182934/140‑1 (MQ=255) aGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCCC‑C‑C‑CATGTTGATCGCAACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTcaca < 2:2201496/140‑1 (MQ=255) gCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCCC‑C‑C‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCacac > 1:1637153/1‑140 (MQ=255) aGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGCCGGAACACGTTCAGTTCAAAGTTACCGGAAGCGCCC‑C‑C‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCGCACACtgt < 1:2803790/140‑1 (MQ=255) gcgcACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCCC‑C‑C‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACtgtg < 1:3795895/140‑1 (MQ=255) ggcaaTTGTGGATCACCCTTGGACGGATGACGTTCAGTCCAGAGTTACCGGTAGCG‑CC‑CTC‑CATGTTGATCGCCACGTCGTTCCCCCTCACCTGACAGCAAAGTATGGTTAATGTCTCACTCGGTGTTGGGTTCACTTTc < 2:4526352/137‑1 (MQ=255) ttGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCCC‑C‑C‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCgg < 1:4713149/140‑1 (MQ=255) ttGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCCC‑C‑C‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCgg < 2:4838777/140‑1 (MQ=255) tgGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCG‑CCGC‑C‑CATGTTGATCGCCCCGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCAt > 2:1736084/1‑140 (MQ=255) ccATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCCC‑C‑C‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCATGATTGAg < 1:629781/140‑1 (MQ=255) ccATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCCC‑C‑C‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCATGATTGAg > 1:2506251/1‑140 (MQ=255) ccATTGGACAAAAGACGTTCAGTTCAAAGTTACCGGAAGCGCCC‑C‑C‑CATGTTGATCTCCACGTCGTTCCCCATCACCTGACAGCAGAGCATCGTTAATGCCTCACACTGTGTGGGGTTCACTTTCCCCGGCATGATTCAg < 2:3739462/140‑1 (MQ=255) ttGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCCC‑C‑C‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCATGATTGAGCTg > 1:4372601/1‑140 (MQ=255) gACGGAGGACGTTAAGTTCAAGGTTACCGGAAGCGCCC‑C‑C‑CATGTTGAGCGGCACTTCGGCCCCCATCGCCTGACAGCAGCGCATGGTTAATGCCCCACACTGTGTTGGGTTCACTTTCCCCGGCAGGATTGCGCTGccc < 2:4071501/140‑1 (MQ=255) aaGACGTTCAGTTCAAAGTTACCGGAAGCGCCC‑C‑C‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCAc > 2:1949711/1‑110 (MQ=255) aaGACGTTCAGTTCAAAGTTACCGGAAGCGCCC‑C‑C‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCATGATTGAGCTGCCCGGCTc > 2:1050311/1‑140 (MQ=255) aaGACGTTCAGTTCAAAGTTACCGGAAGCGCCC‑C‑C‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCATGATTGAGCTGCCCGGCTc > 1:1773350/1‑140 (MQ=255) aaGACGTTCAGTTCAAAGTTACCGGAAGCGCCC‑C‑C‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCATGATTGAGCTGCCCGGCTc > 1:2074297/1‑140 (MQ=255) aaGACGTTCAGTTCAAAGTTACCGGAAGCGCCC‑C‑C‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCATGATTGAGCTGCCCGGCTc > 2:458378/1‑140 (MQ=255) aaGACGTTCAGTTCAAAGTTACCGGAAGCGCCC‑C‑C‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCATGATTGAGCTGCCCGGCTc > 1:345787/1‑140 (MQ=255) aaGACGTTCAGTTCAAAGTTACCGGAAGCGCCC‑C‑C‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCATGATTGAGCTGCCCGGCTc > 2:4347280/1‑140 (MQ=255) ttcagttcaAAGTTACCGGAAGCGCCC‑C‑C‑CGTGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGGGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCATGATTGAGCTGCCCGGCTCATTTTc < 2:1546819/140‑1 (MQ=255) tcagttcaAAGTTACCGGAAGCGCCC‑C‑C‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCATGATTGAGCTGCCCGGCTCATTTTcc > 1:2213148/1‑140 (MQ=255) tcagttcaAAGTTACCGGAAGCGCCC‑C‑C‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCATGATTGAGCTGCCCGGCTCATTTTcc < 1:866097/140‑1 (MQ=255) caAAGTTACCGGAAGCGCCC‑C‑C‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCATGATTGAGCTGCCCGGCTCATTTTCCGGGAtt < 2:2262309/140‑1 (MQ=255) caAAGTTACCGGAAGCGCCC‑C‑C‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCATGATTGAGCTGCCCGGCTCATTTTCCGGGAtt < 2:937769/140‑1 (MQ=255) ccGGAAGCGCCC‑C‑C‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGGCAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCATGATTGAGCTGCCCGGCTCATTTTCCGGGATTGAGATTTc > 2:396953/1‑140 (MQ=255) ccGGAAGCGCCC‑C‑C‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCATGATTGAGCTGCCCGGCTCATTTTCCGGGATTGAGATTTc > 1:4835621/1‑140 (MQ=255) ccGGAAGCGCCC‑C‑C‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCATGATTGAGCTGCCCGGCTCATTTTCCGGGATTGAGATTTc > 2:5087897/1‑140 (MQ=255) ccGGAAGCGCCC‑C‑C‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCATGATTGAGCTGCCCGGCTCATTTTCCGGGATTGAGATTTc > 1:1319978/1‑140 (MQ=255) | TTCGCTCACGATTCGGTTCAATACCCACTGCGCAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCG‑CC‑C‑C‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCATGATTGAGCTGCCCGGCTCATTTTCCGGGATTGAGATTTCAC > NZ_CP025268/1690216‑1690487 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |