| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP025268 | 1,701,269 | +A | intergenic (‑380/+10) | uidA ← / ← uidR | beta‑glucuronidase/DNA‑binding transcriptional regulator UidR |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP025268 | 1,701,265 | 1 | . | A | 94.6% | 1220.0 / 50.8 | 338 | intergenic (‑376/+14) | uidA/uidR | beta‑glucuronidase/DNA‑binding transcriptional regulator UidR |
| Reads supporting (aligned to +/- strand): ref base . (8/10); new base A (141/176); total (150/188) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 344 total aligned reads displayed.
AGCGTATTGGGAACGATAAACTCTCATGACATATGGCTACAGTGAATATTTTGGGGGGAATTCTCCGAAGCCGGGAAGGATAATTTTTGCACAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCG‑AAA‑AGAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTCCGCTTCGATATCGGCCAGTACACCGTAGGTCAGATCCAGCAGTA > NZ_CP025268/1701126‑1701397 | ttGGGAACGATAAACTCTCATGACATATGGCTACAGTGAATATTTTGGGGGGAATTCTCCGAAGCCGGGAAGGATAATTTTTGCACAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCG‑aaa‑aag > 2:5016200/1‑138 (MQ=255) ggAACGATAAACTCTCATGACATATGGCTACAGTGAATATTTTGGGGGGAATTCTCCGAAGCCGGGAAGGATAATTTTTGCACAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCG‑AAa‑a‑agaga < 2:3864081/140‑1 (MQ=255) aaCGATAAACTCTCATGACATATGGCTACAGTGAATATTTTGGGGGGAATTCTCCGAAGCCGGGAAGGATAATTTTTGCACAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCG‑AAA‑a‑agagaga > 2:509741/1‑140 (MQ=255) aTAAACTCTCATGACATATGGCTACAGTGAATATTTTGGGGGGAATTCTCCGAAGCCGGGAAGGATAATTTTTGCACAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCGAAAA‑AGAGAGAGAAt > 2:613053/1‑140 (MQ=255) aTAAACTCTCATGACATATGGCTACAGTGAATATTTTGGGGGGAATTCTCCGAAGCCGGGAAGGATAATTTTTGCACAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCGAAAA‑AGAGAGAGAAt < 1:4867624/140‑1 (MQ=255) aTAAACTCTCATGACATATGGCTACAGTGAATATTTTGGGGGGAATTCTCCGAAGCCGGGAAGGATAATTTTTGCACAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCGAAAA‑AGAGAGAGAAt > 1:4690354/1‑140 (MQ=255) aTAAACTCTCATGACATATGGCTACAGTGAATATTTTGGGGGGAATTCTCCGAAGCCGGGAAGGATAATTTTTGCACAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCGAAAA‑AGAGAGAGAAt < 2:4442505/140‑1 (MQ=255) aTAAACTCTCATGACATATGGCTACAGTGAATATTTTGGGGGGAATTCTCCGAAGCCGGGAAGGATAATTTTTGCACAGAGAAATTAAGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCGAAAA‑AGAGAGAGAAt > 1:3648623/1‑140 (MQ=255) tctcATGACATATGGCTACAGTGAATATTTTGGGGGGAATTCTCCGAAGCCGGGAAGGATAATTTTTGCACAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCGAAAA‑AGAGAGAGAATCAGGAt > 2:1311260/1‑140 (MQ=255) tctcATGACATATGGCTACAGTGAATATTTTGGGGGGAATTCTCCGAAGCCGGGAAGGATAATTTTTGCACAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCGAAAA‑AGAGAGAGAATCAGGAt < 1:1541315/140‑1 (MQ=255) tctcATGACATATGGCTACAGTGAATATTTTGGGGGGAATTCTCCGAAGCCGGGAAGGATAATTTTTGCACAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCGAAAA‑AGAGAGAGAATCAGGAt < 1:3468918/140‑1 (MQ=255) tctcATGAAATATGGCCACAGTGAATATTTTGGGGGGAATTCTCCGACGCCGGGAAGGATAATTTTTGCACAGAGAAATTACGATATGAAACGCGGGCACAGTTACCACCAGCCCGACGAAAA‑AGAGAGAGAATCAGGAt < 2:243856/140‑1 (MQ=255) cctcATGACACATGGCTACAGTGAATATTTTGGGGGGAATTCTCCGAAGCCGGGAAGGATAATTTTTGCACAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCGAAAA‑AGAGAGAGAATCAGGAt < 1:2674473/139‑1 (MQ=255) tcATGACATCTGGCTACAGTGAATATTTTGGGGGGAATTCTCCGAAGCCGGGAAGGATAATTTTTGCACAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCGAAAA‑AGAGAGAGAATCAGGATGc < 2:3493016/140‑1 (MQ=255) cATGACATATGGCTACAGTGAATATTTTGGGGGGAATTCTCCGAAGCCGGGAAGGATAATTTTTGCACAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCGAAAA‑AGAGAGAGAATCAGGATGCg > 2:3984816/1‑140 (MQ=255) cATGACATATGGCTACAGTGAATATTTTGGGGGGAATTCTCCGAAGCCGGGAAGGATAATTATTGCAAAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCAGCCGAAAA‑AGAGAGAGAATCAGGATggg > 2:1865273/1‑138 (MQ=255) cATGACATATGGCTACAGCGAATCCTTGGGGGGGAATTCTCCGAAGACGGGAAGGATAATTTTTGCACAGAGAAATTACGATAGGAAACGCGGGCACAGTTATGACCAGCCCGCCGAAAA‑AGAGAGAAAAGCAGGAGGCg > 2:1472790/1‑140 (MQ=255) tGACATATGGCTACAGTGAATATTTTGGGGGGAATTCTCCGAAGCCGGGAAGGATAATTTTTGCACAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCGAAAA‑AGAGAGAGAATCAGGATGCGGt < 2:4358074/140‑1 (MQ=255) tGACATATGGCTACAGTGAATATTTTGGGGGGAATTCTCCGAAGCCGGGAAGGATAATTTTTGCACAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCGAAAA‑AGAGAGAGAATCAGGATGCGGt < 1:3899388/140‑1 (MQ=255) tatGGCTACAGTGAAGATTTTGGGGGGAATTCTCCGAAGCCGGGAAGGATAATTTTTGCACAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCGAAAA‑AGAGAGAGAATCAGGATGCGGTTAAGa > 1:3694290/1‑140 (MQ=255) tGGCTACAGTGAATATTTTGGGGGGAATTCTCCGAAGCCGGGAAGGATAATTTTTGCACAGAGAAATTCCGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCGAAAA‑AGAGAGAGAATCAGGATGCGGTTAAGATa < 2:4695506/140‑1 (MQ=255) tGGCTACAGTGAATATTTTGGGGGGAATTCTCCGAAGCCGGGAAGGATAATTTTTGCACAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCGAAAA‑AGAGAGAGAATCAGGATGCGGTTAAGATa > 1:2184544/1‑140 (MQ=255) tGGCTAACGTGAATATTTTGGGGGGAATTCTCCGAAGCCGGGAAGGATAATTTTTGCACAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCGAAAA‑AGAGAGAGAATCAGGATGCGGTTAAGATa < 2:2894368/140‑1 (MQ=255) gCTACAGTGAATATTTTGGGGGGAATTCTCCGAAGCCGGGAAGGATAATTTTTGCACAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCGAAAA‑AGAGAGAGAATCAGGATGCGGTTAAGATAcc > 2:1343838/1‑140 (MQ=255) cAGTGAATATTTTGGGGGGAATTCTCCGAAGCCGGGAAGGATAATTTTTGCACAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACGAGCCCGCCGAAAA‑AGAGAGAGAATCAGGATGCGGTTAAGATACCGCCa > 2:3192359/1‑140 (MQ=255) cAGTGAATATTTTGGGGGGAATTCTCCGAAGCCGGGAAGGATAATTTTTGCACAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCGAAAA‑AGAGAGAGAATCAGGATGCGGTTAAGATACCGCCa > 1:2213983/1‑140 (MQ=255) aGTGAATATTTTGGGGGGAATTCTCCGAAGCCGGGAAGGATAATTTTTGCACAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCGAAAA‑AGAGAGAGAATCAGGATGCGGTTAAGATACCGCCaa > 1:4749165/1‑140 (MQ=255) aacatTTTGGGGGGAATTCTCCGAAGCCGGGAAGGATAATTTTTGCACAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCGAAAA‑AGAGAGAGAATCAGGATGCGGTTAAGATACCGCCAatcat > 2:4644235/4‑140 (MQ=255) aaTATTTTGGGGGGAATTCTCCGAAGCCGGGAAGGATAATTTTTGCACAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCGAAAA‑AGAGAGAGAATCAGGATGCGGTTAAGATACCGCCAatcat > 1:2981237/1‑140 (MQ=255) aaTATTTTGGGGGGAATTCTCCGAAGCCGGGAAGGATAATTTTTGCACAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCGAAAA‑AGAGAGAGAATCAGGATGCGGTTAAGATACCGCCAatcat > 1:4144691/1‑140 (MQ=255) tatTTTGGGGGGAATTCTCCGAAGCCGGGAAGGATAATTTTTGCACAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCGAAAA‑AGAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATcg < 1:3981092/140‑1 (MQ=255) ttttGGGGGGAATTCTCCGAAGCCGGGAAGGATAATTTTTGCACAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCGAAAA‑AGAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATcgcg < 1:2497580/140‑1 (MQ=255) ttGGGGGGAATTCTCCGAAGCCGGGAAGGATAATTTTTGCACAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCGAAAA‑AGAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATcgcgcg > 2:4787901/1‑140 (MQ=255) ttGGGGGGAATTCTCCGAAGCCGGGAAGGATAATTTTTGCACAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCGAAAA‑AGAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATagcgcg > 2:493505/1‑140 (MQ=255) tGGGGGGAATTCTCCGAAGCCGGGAAGGATAATTTTTGCACAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCGAAAA‑AGAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGt < 1:1623891/140‑1 (MQ=255) tGGGGGGAATTCTCCGAAGCCGGGAAGGATAATTTTTGCACAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCGAAAA‑AGAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGt < 1:2923744/140‑1 (MQ=255) ggAATTCTCCGAAGCCGGGAAGGATAATTTTTGCACAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCGAAAA‑AGAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATcc > 2:2201575/1‑140 (MQ=255) aaTTCTCCGAAGCCGGGAAGGATAATTTTTGCACAGAGAAATTACGCTATGAAACGCGGGCACAGTTATCACCAGCCCGCCGAAAA‑AGAGAGAGAATCAGGATGCGGTTGAGATAGCGCCAATCATCGCGCGTAATCCCt > 2:1145293/1‑140 (MQ=255) aaTTCTCCGAAGCCGGGAAGGATAATTTTTGCACAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCGAAAA‑AGAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCt > 2:1701367/1‑140 (MQ=255) cGAAGCCGGGAAGGATAATTTTTGCACAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCGAAAA‑AGAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCaaa > 2:4128318/1‑140 (MQ=255) aaGGATAATTTTTGCACAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCGAAAA‑AGAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCa < 2:1964443/140‑1 (MQ=255) gATAATTTTTGCACAGAGAAATTACGATATGAACCGCGGACACAGTTATCACCAGCCCGCCGAAAA‑AGAGAGAGAATCAGGATGCGGTTAAGTTACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCAcgc < 2:2817876/140‑1 (MQ=255) gATAATTTTTGCACAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCGAAAA‑AGAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCAcgc < 2:4167424/140‑1 (MQ=255) gATAATTTTTGCACAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCGAAAA‑AGAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCAcgc > 2:1248170/1‑140 (MQ=255) ccttttcGCAAAGAGAAAGTACGATATGAACCGCGGGCACAGTTATCACCAGTCCGCCGAAAA‑AGAGTGAGAATCAGGATGCGGTTAAGATGCCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGcc < 2:9242/138‑1 (MQ=255) aaTTTTTGCACAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCGAAAA‑AGAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGcc < 2:841666/140‑1 (MQ=255) cacaGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCGAAAA‑AGAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTc < 2:2236129/140‑1 (MQ=255) cacaGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCGAAAA‑AGAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTc < 1:718987/140‑1 (MQ=255) gagaAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCGAAAA‑AGAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTCCGCt > 1:4498456/1‑140 (MQ=255) agaAATTACGATATGAAACGCGGGCACAGTTCTCACCAGCCCGCCGAAAA‑AGAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTCCGCtt < 1:2559652/140‑1 (MQ=255) agaAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCGAAAA‑AGAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTCCGCtt > 1:4310269/1‑140 (MQ=255) ttACGATATGAAACGCGGTCACAGTTATCACCAGCCCGCCGAAAA‑AGAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTCCGCTTCGata < 2:3625601/140‑1 (MQ=255) ttACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCGAAAA‑AGAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTCCGCTTCGata < 2:3758638/140‑1 (MQ=255) ttACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCGAAAA‑AGAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTCCGCTTCGata < 2:1549448/140‑1 (MQ=255) ttACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCGAAAA‑AGAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTCCGCTTCGata < 1:775247/140‑1 (MQ=255) ttACGATATGAAACGCGGGCACAGTTATCACAAGCCAGCCG‑AAACAGAGAGAGAATCCGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTCCGCTTCGata < 2:2676427/140‑1 (MQ=255) atatGAAACGCGGGCACATTTATCACCAGCCCGCCGAAAA‑AGAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTCCGCTTCGATATCGGc < 1:5005120/140‑1 (MQ=255) atatGAAACGCGGGCACAGTTATCACCAGCCCGCCGAAAA‑AGAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTACTCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTCCGCTTCGATATCGGc < 1:3072026/140‑1 (MQ=255) atatGAAACGCGGGCACAGTTATCACCAGCCCGCCGAAAA‑AGAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTCCGCTTCGATATCGGc < 1:2727541/140‑1 (MQ=255) atatGAAACGCGGGCACAGTTATCACCAGCCCGCCGAAAA‑AGAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTCCGCTTCGATATCGGc < 1:2014907/140‑1 (MQ=255) atatGAAACGCGGGCACAGTTATCACCAGCCCGCCGAAAA‑AGAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTCCGCTTCGATATCGGc < 2:4675076/140‑1 (MQ=255) atatGAAACGCGGGCACAGTTATCACCAGCCCGCCGAAAA‑AGAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTCCGCTTCGATATCGGc < 1:1183937/140‑1 (MQ=255) atatGAAACGCGGGCACAGTTATCACCAGCCCGCCGAAAA‑AGAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTCCGCTTCGATATCGGc < 1:1398862/140‑1 (MQ=255) atatGAAACGCGGGCACAGTTATCACCAGCCCGCCGAAAA‑AGAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTCCGCTTCGATATCGGc < 2:4909038/140‑1 (MQ=255) atatGAAACGCGGGCACAGTTATCACCAGCCCGCCGAAAA‑AGAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTCCGCTTCGATATCGGc > 1:3801809/1‑140 (MQ=255) atatGAAACGCGGGCACAGTTATCACCAGCCCGCCGAAAA‑AGAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTCCGCTTCGATATCGGc < 1:1374804/140‑1 (MQ=255) atatGAAACGCGGGCACAGTTATCACCAGCCCGCCGAAAA‑AGAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTCCGCTTCGATATCGGc > 2:2533255/1‑140 (MQ=255) atatGAAACGCGGGCACAGTTATCACCAGCCCGCCGAAAA‑AGAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTCCGCTTCGATATCGGc < 1:3846086/140‑1 (MQ=255) atatGAAACGCGGGCACAGTTATCACCAGCCCGCCGAAAA‑AGAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTCCGCTTCGATATCGGc < 1:1062604/140‑1 (MQ=255) atatGAAACGCGGGCACAGTTATCACCAGCCCGCCGAAAA‑AGAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTCCGCTTCGATATCGGc < 2:761836/140‑1 (MQ=255) atatGAAACGCGGGCACAGTTATCACCAGCCCGCCGAAAA‑AGAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTCCGCTTCGATATCGGc > 1:1010956/1‑140 (MQ=255) atatGAAACGCGGGCACAGTTATCACCAGCCCGCCGAAAA‑AGAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTCCGCTTCGATATCGGc < 1:535952/140‑1 (MQ=255) atatGAAACGCGGGCACAGTTATCACCAGCCCGACGAAAA‑AGAGAGAGAATCAGGCTGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTCCGCTTCGATATCGGc < 2:2962193/140‑1 (MQ=255) atatGAAACGAGGGCACACTTATCACCAGCCCGCCGAAAA‑AGAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTCCGCTTCGATATCGGc < 2:4501036/140‑1 (MQ=255) atacgAAACGCGGGCACAGTTATCACCAGCCCGCCGAAAA‑AGAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTCCGCTTCGATATCGGc < 2:2051679/136‑1 (MQ=255) tatGAAACGCGGGCACAGTTATCACCAGCCCGCCGAAAA‑AGAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTCCGCTTCGATATCGGcc < 2:113495/140‑1 (MQ=255) tGAAACGCGGGCACAGTTATCACCAGCCCGCCGAAAA‑AGAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTCCGCTTCGATATCGGCCAg < 2:2169526/140‑1 (MQ=255) aaaCGCGGGCACAGTTATCACCAGCCCGCCGAAAA‑AGAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTACTCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTCCGCTTCGATATCGGCCAGTa < 2:1019866/140‑1 (MQ=255) aaaCGCGGGCACAGTTATCACCAGCCCGCCGAAAA‑AGAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTCCGCTTCGATATCGGCCAGTa < 2:3909710/140‑1 (MQ=255) aaaCGCGGGCACAGTTATCACCAGCCCGCCGAAAA‑AGAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTCCGCTTCGATATCGGCCAGTa < 2:3119300/140‑1 (MQ=255) cgcgGGCACAGTTATCACCAGCCCGCCGAAAA‑AGAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTCCGCTTCGATATCGGCCAGTacac > 1:1256988/1‑140 (MQ=255) cgGGCACAGTTATCACCAGACCGCCGAAAA‑AGAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTCCGCTTCGATATCGGCCAGTACACCg < 2:2991955/140‑1 (MQ=255) gggCACAGTTATCACCAGCCCGCCGAAAA‑AGAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTCCGCTTCGATATCGGCCAGTACACCGt < 2:1600160/140‑1 (MQ=255) caGTTATCACCAGCCCGCCGAAAA‑AGAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTCCGCTTCGATATCGGCCAGTACACCGTAGGTc < 2:2329796/140‑1 (MQ=255) caGTTATCACCAGCCCGCCGAAAA‑AGAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATCGAGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTCCGCTTCGATATCGGCCAGTACACCGTAGGTc < 2:406410/140‑1 (MQ=255) tATCACCAGCCCGCCGAAAA‑AGAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTCCGCTTCGATATCGGCCAGTACACCGTAGGTCAGAt > 1:333942/1‑140 (MQ=255) aTCACCAGCCCGCCGAAAA‑AGAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTCCGCTTCGATATCGGCCAGTACACCGTAGGTCAGATc < 1:4249018/140‑1 (MQ=255) tCACCAGCCCGCCGAAAA‑AGAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTCCGCTTCGATATCGGCCAGTACACCGTAGGTCAGATcc < 2:689375/140‑1 (MQ=255) aGCCCGCCGAAAA‑AGAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTCCGCTTCGATATCGGCCAGTACACCGTAGGTCAGATCcagcag > 1:2378937/1‑140 (MQ=255) aGCCCGCCGAAAA‑AGAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTCCGCTTCGATATCGGCCAGTACACCGTAGGTCAGATCcagcag < 1:4027007/140‑1 (MQ=255) aGCCCGCCGAAAA‑AGAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTCCGCTTCGATATCGGCCAGTACACCGTAGGTCAGATCcagcag > 2:2924320/1‑140 (MQ=255) cccGCCGAAAA‑AGAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTCCGCTTCGata > 2:3586177/1‑106 (MQ=255) cccGCCGAAAA‑AGAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTCCGCTTCGATATCGGCCAGTACACCGTAGGTCAGATCCAGCAGTa < 2:2636143/140‑1 (MQ=255) cccGCCGAAAA‑AGAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTCCGCTTCGATATCGGCCAGTACACCGTAGGTCAGATCCAGCAGTa > 1:3166771/1‑140 (MQ=255) cccGCCGAAAA‑AGAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTCCGCTTCGATATCGGCCAGTACACCGTAGGTCAGATCCAGCAGTa > 1:3549563/1‑140 (MQ=255) cccGCCGAAAA‑AGAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTCCGCTTCGATATCGGCCAGTACACCGTAGGTCAGATCCAGCAGTa > 1:1425883/1‑140 (MQ=255) cccGCCGAAAA‑AGAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTCCGCTTCGATATCGGCCAGTACACCGTAGGTCAGATCCAGCAGTa > 1:1847890/1‑140 (MQ=255) cccGCCGAAAA‑AGAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTCCGCTTCGATATCGGCCAGTACACCGTAGGTCAGATCCAGCAGTa < 2:3274287/140‑1 (MQ=255) cccGCCGAAAA‑AGAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTCCGCTTCGATATCGGCCAGTACACCGTAGGTCAGATCCAGCAGTa > 2:1922066/1‑140 (MQ=255) cccGCCGAAAA‑AGAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTCCGCTTCGATATCGGCCAGTACACCGTAGGTCAGATCCAGCAGTa > 1:1902314/1‑140 (MQ=255) | AGCGTATTGGGAACGATAAACTCTCATGACATATGGCTACAGTGAATATTTTGGGGGGAATTCTCCGAAGCCGGGAAGGATAATTTTTGCACAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCG‑AAA‑AGAGAGAGAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTCCGCTTCGATATCGGCCAGTACACCGTAGGTCAGATCCAGCAGTA > NZ_CP025268/1701126‑1701397 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |