| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP025268 | 1,879,869 | (C)5→6 | pseudogene (521/821 nt) | nimR ← | DNA‑binding transcriptional regulator NimR |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP025268 | 1,879,864 | 1 | . | C | 96.8% | 918.2 / 20.4 | 281 | pseudogene (526/821 nt) | nimR | DNA‑binding transcriptional regulator NimR |
| Reads supporting (aligned to +/- strand): ref base . (6/3); new base C (122/150); total (128/153) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.08e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 318 total aligned reads displayed.
GCCTTTCACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑G‑C‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAACAGGACCTGAATTAATCTGCGGG > NZ_CP025268/1879725‑1879998 | gacTTTCACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTCTCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑g < 2:2476225/138‑1 (MQ=255)gCCTTTCACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑g < 2:2516279/140‑1 (MQ=255) ccTTTCACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATTAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑G‑c > 2:3519829/1‑140 (MQ=255) ccTTTCACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑G‑c > 2:1319182/1‑140 (MQ=255) cTTTCACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑G‑c‑c < 1:914815/140‑1 (MQ=255) cTTTCACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑G‑c‑c < 2:1147104/140‑1 (MQ=255) cTTTCACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑G‑c‑c < 2:2704119/140‑1 (MQ=255) cTTTCACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑G‑c‑c < 2:1205936/140‑1 (MQ=255) cTTTAACTAATCCCTGACGCGCCATAATCAGCTGTACCTGCTGACGCCACTGGCGAAAACTCAGCCCCGGCTCCGTTACTAACAGGCGGGTAAGATGGCGCTCACTAATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑G‑c‑c < 2:90509/140‑1 (MQ=255) ttCACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑G‑c‑ccc > 2:2116832/1‑140 (MQ=255) cACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑G‑c‑ccccc > 2:398028/1‑139 (MQ=255) cACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑G‑c‑ccccc > 1:3019943/1‑139 (MQ=255) cACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑G‑c‑ccccc > 1:734699/1‑139 (MQ=255) aTCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑CCCCACTCg > 2:431802/1‑140 (MQ=255) tCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑CCCCACTCGa > 1:2132790/1‑140 (MQ=255) ccTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑CCCCACTCGACa < 1:1874191/140‑1 (MQ=255) cTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑CCCCACTCGACAg > 2:2944103/1‑140 (MQ=255) cTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑CCCCACTCGACAg < 2:466987/140‑1 (MQ=255) cTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑CCCCACTCGACAg < 2:95576/140‑1 (MQ=255) tGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑CCCCACTCGACAgg > 1:622171/1‑140 (MQ=255) tGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑CCCCACTCGACAgg > 1:3966205/1‑140 (MQ=255) tGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑CCCCACTCGACAgg > 1:364288/1‑140 (MQ=255) tGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑CCCCACTCGACAgg > 1:1090452/1‑140 (MQ=255) tGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑CCCCACTCGACAgg > 1:4184273/1‑140 (MQ=255) tGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑CCCCACTCGACAgg > 2:543905/1‑140 (MQ=255) tGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTGTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAATAGCCAGCCCATAGCCCCAATGG‑G‑CCCCACTCGACAgg > 2:5109452/1‑140 (MQ=255) cgcCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑CCCCACTCGACAGGCCCtt > 2:1885643/1‑140 (MQ=255) cgcCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTGCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑CCCCACTCGACAGGCCCtt > 1:1512952/1‑140 (MQ=255) cATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑CCCCACTCGACAGGCCCTTTCg > 2:2578020/1‑140 (MQ=255) cATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑CCCCACTCGACAGGCCCTTTCg < 1:2680229/140‑1 (MQ=255) aTAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑CCCCACTCGACAGGCCCTTTCGc > 2:4427317/1‑140 (MQ=255) tAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATCC‑C‑CCCCTCTCGACAGGCCCTTTCGcc < 2:2967680/140‑1 (MQ=255) tAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑CCCCACTCGACAGGCCCTTTCGcc > 2:1264069/1‑140 (MQ=255) aaTCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑CCCCACTCGACAGGCCCTTTCGCca < 1:3708846/140‑1 (MQ=255) aaTCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑CCCCACTCGACAGGCCCTTTCGCca < 2:4357349/140‑1 (MQ=255) aaTCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑CCCCACTCGACAGGCCCTTTCGCca < 2:1016503/140‑1 (MQ=255) tCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑CCCCACTCGACAGGCCCTTTCGCcatc < 2:4727126/140‑1 (MQ=255) tCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑CCCCACTCGACAGGCCCTTTCGCcatc < 1:961482/140‑1 (MQ=255) tCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑CCCCACTCGACAGGCCCTTTCGCcatc < 1:2769155/140‑1 (MQ=255) tCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACCATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑CCCCACTCGACAGGCCCTTTCGCcatc < 2:3224024/140‑1 (MQ=255) tCAGCTGGAACTGCTGACGCCAGTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCACGATTGCGTTCTCTCCTCGCAAAAACGCCAGCCCATTGCCCCAAC‑GCC‑CCCCACTCGACAGGCCCTTTCGCcatc < 2:2822316/140‑1 (MQ=255) cTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑CCCCACTCGACAGGCCCTTTCGCCATCAtct > 1:4773633/1‑140 (MQ=255) tAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTcca < 1:2941807/140‑1 (MQ=255) aCTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTccacc > 1:4477367/1‑140 (MQ=255) aCTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTccacc > 1:487001/1‑140 (MQ=255) gctgACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTCCGTTCACTCATCGC‑AAAAACCCAGCACATTGCCACAATAC‑C‑CCCCACTCCACAGGCCCTTTCGACATCACCTCCACCATCg > 2:1480924/1‑140 (MQ=255) ctgACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCg > 2:3409571/1‑140 (MQ=255) tgACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGt > 1:2863908/1‑140 (MQ=255) tgACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGt > 1:4004548/1‑140 (MQ=255) gCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCgg < 1:4982275/140‑1 (MQ=255) tGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGAtttt > 2:716936/1‑140 (MQ=255) cGAAACCTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAgg < 1:1363583/140‑1 (MQ=255) aCTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATgag < 2:3775982/140‑1 (MQ=255) tctcTTTTACTATCAGTCGGGCAAGATTGCGTTCCCTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGAGTTTAGGATGAGAAGAAACGGGc > 2:3282812/1‑140 (MQ=255) tctcTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑CCCCACTCGAc > 1:788779/1‑82 (MQ=255) tctcTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑CCCCACTCGAc < 2:788779/82‑1 (MQ=255) tctcTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGc < 1:1205532/140‑1 (MQ=255) tctcTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGc < 2:2739882/140‑1 (MQ=255) tctcTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGc > 1:1706970/1‑140 (MQ=255) tctcTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGc < 1:1229635/140‑1 (MQ=255) tctcTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGc < 1:3162478/140‑1 (MQ=255) tttACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAACAAAGCCAGCCCATTGCCCCAAT‑GCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTg > 2:3358697/1‑140 (MQ=255) ttACTATCCGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGc < 2:2139271/140‑1 (MQ=255) ttACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGc < 1:3271266/140‑1 (MQ=255) aCTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAg < 1:2578020/140‑1 (MQ=255) tCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCtgt > 2:3659731/1‑140 (MQ=255) tCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCtgt > 1:588009/1‑140 (MQ=255) tCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCtgt > 2:5014013/1‑140 (MQ=255) tCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACCGGCAGGTGCAGCtgt > 2:2183836/1‑140 (MQ=255) aGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑CCCCACTCGACAGGCCCTTTCGCcatc < 1:4356115/84‑1 (MQ=255) aGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCtgttg > 1:2505414/1‑140 (MQ=255) tCGGTCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGTTGCAGCtgttgtt > 2:3616340/1‑140 (MQ=255) ggCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTtgtg < 1:3935520/140‑1 (MQ=255) cGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAgg > 1:1269763/1‑140 (MQ=255) cGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAgg > 1:5014733/1‑140 (MQ=255) cGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑G‑c‑c < 2:586484/42‑1 (MQ=255) ttCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGa < 2:882010/140‑1 (MQ=255) cACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGt < 2:1104056/140‑1 (MQ=255) tCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTtca < 1:1478818/140‑1 (MQ=255) tCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTtca < 1:2096245/140‑1 (MQ=255) cATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTtcat < 2:1713991/140‑1 (MQ=255) tCGCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGGGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTtcatca > 1:1857697/1‑140 (MQ=255) gCAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCaaa < 1:495003/140‑1 (MQ=255) cAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAAc < 1:4105483/140‑1 (MQ=255) cAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAAc < 1:1261022/140‑1 (MQ=255) cAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAAc < 1:2251364/140‑1 (MQ=255) cAAAAAAGCCAGCCCATTGCCCCAAT‑GCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAAc < 2:2598251/140‑1 (MQ=255) aaaaaaGCCAGCCCATTGCCCCAAT‑GCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAACa < 1:4168572/140‑1 (MQ=255) cagccagccCCTTGCCCTAATCC‑C‑CCCCAGTCGACCTGCCCTTTCTACATCATCTCCCCCATCGTGCGGAATTTACGGGGAGAAGAAACGGGCAGGTTCAGCTGTTGTTGTGGCTGCTGAGGGAGCTCATCGAACAGGAc < 2:1568813/139‑1 (MQ=255) aaGCCAGCCCATTGCCCCAAT‑GCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCCCCATCGTGCGGATTTTAGGATGAGAAGAAACGGGTAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAACAGGAc < 2:3019554/140‑1 (MQ=255) aaGCCAGCCCATTGCCCCAAT‑GCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCATCCTCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAACAGGAc < 1:4226058/140‑1 (MQ=255) aaGCCAGCCCATTGCCCCAAT‑GCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAACAGGAc < 1:1652976/140‑1 (MQ=255) aaGCCAGCCCATTGCCCCAAT‑GCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAACAGGAc < 1:398028/140‑1 (MQ=255) aaGCCAGCCCATTGCCCCAAT‑GCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAACAGGAc < 2:1213131/140‑1 (MQ=255) aaGCCAGCCCATTGCCCCAAT‑GCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAACAGGAc < 2:1366260/140‑1 (MQ=255) gccCATTGCCCCAAT‑GCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAACAGGACCTGAAt > 1:2340115/1‑140 (MQ=255) gccCATTGCCCCAAT‑GCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAACAGGACCTGAAt < 1:4624918/140‑1 (MQ=255) gccCATTGCCCCAAT‑G‑CTCCCCACTCGACAGGCCCTTTCGCCATCATCGCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCGGTGGTTGTGGCTGCTGAGGGAGCTCATCAAACAGGACCTGAAt > 2:2341510/1‑140 (MQ=255) ccccAAT‑GCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAACAGGACCTGAATTAATCTGc < 1:3797042/140‑1 (MQ=255) ccAAT‑GCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGAATTGTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAACAGGACCTGAATTAATCTGCgg < 1:3628807/140‑1 (MQ=255) | GCCTTTCACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAAT‑G‑C‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAACAGGACCTGAATTAATCTGCGGG > NZ_CP025268/1879725‑1879998 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |