| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP025268 | 2,858,752 | +T | pseudogene (395/2078 nt) | flhA → | formate hydrogenlyase transcriptional activator FlhA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP025268 | 2,858,748 | 1 | . | T | 97.5% | 1032.8 / 13.8 | 282 | pseudogene (391/2078 nt) | flhA | formate hydrogenlyase transcriptional activator FlhA |
| Reads supporting (aligned to +/- strand): ref base . (5/2); new base T (138/135); total (145/137) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.48e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 334 total aligned reads displayed.
CGCAGCATTTTGTCGCGCCCTGATACGCTGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCATA‑T‑TTTGGT‑GGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTGTCGTCACCGAACAAATCCAGAGCCGCGTCGTTAACAATGTCG > NZ_CP025268/2858610‑2858882 | agcaTTTTGTCGCGCCCTGATACGCTGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGGTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCATA‑t‑ttt > 2:4606190/1‑140 (MQ=255) agcaTTTTGTCGCGCCCTGATACGCTGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCATA‑t‑ttt > 2:1435375/1‑140 (MQ=255) agcaTTTTGTCGCGCCCTGATACGCTGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCATA‑t‑ttt > 1:3225620/1‑140 (MQ=255) agcaTTTTGTCGCGCCCTGATACGCTGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCATA‑t‑ttt > 1:2814596/1‑140 (MQ=255) agcaTTTTGTCGCGCCCTGATACGCTGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCATA‑t‑ttt > 1:2648606/1‑140 (MQ=255) agcaTTTTGTCGCGCCCTGATACGCTGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCATA‑t‑ttt > 1:4426142/1‑140 (MQ=255) agcaTTTTGTCGCGCCCTGATACGCTGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCATA‑t‑ttt > 2:1165719/1‑140 (MQ=255) agcaTTTTGTCGCGCCCTGATACGCTGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCATA‑t‑ttt > 1:1698529/1‑140 (MQ=255) agcaTTTTGTCGCGCCCTGATACGCTGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCATA‑t‑ttt > 2:3069525/1‑140 (MQ=255) agcaTTTTGTCGCGCCCTGATACGCTGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCATA‑t‑ttt > 2:3268708/1‑140 (MQ=255) agcaTTTTGTCGCGCCCTGATACGCTGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCATA‑t‑ttt > 2:882360/1‑140 (MQ=255) agcaTTTTGTCGCGCCCTGATACGCTGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCATA‑t‑ttt > 1:1002542/1‑140 (MQ=255) agcaTTTTGTCGCGCCCTGATACGCTGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCGGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCACA‑t‑ttt > 1:4805042/1‑140 (MQ=255) caTTTTGTCGCGCCCTGATACGCTGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCATA‑t‑ttttg < 1:2012238/140‑3 (MQ=255) caTTTTGTCGCGCCCTGATACGCTGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCATA‑t‑ttttg < 1:1391821/140‑3 (MQ=255) caTTTTGTCGCGCCCTGATACGCTGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCATA‑t‑ttttg > 2:3809508/1‑138 (MQ=255) ttttGTCGCGCCCTGATACGCTGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCATA‑t‑ttttggt > 1:4392638/1‑136 (MQ=255) tttGTCGCGCCCTGATACGCTGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCATA‑t‑ttttggtg > 1:5001977/1‑135 (MQ=255) tttGTCGCGCCCTGATACGCTGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCATA‑t‑ttttggtg > 1:2863162/1‑135 (MQ=255) cgcCCTGATACGCTGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCATATT‑TTTGGT‑GGCTGTGa > 2:3506109/1‑140 (MQ=255) tGATACGCTGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGGGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCATATT‑TTTGGT‑GGCTGTGAATTTa > 2:2063267/1‑140 (MQ=255) gATACGCTGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCATATT‑TTTGGT‑GGCTGTGAATTTAt < 1:1193174/140‑1 (MQ=255) cTGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCATATT‑TTTGGT‑GGCTGTGAATTTATTCGTTa < 1:3702167/140‑1 (MQ=255) tGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCATATT‑TTTGGT‑GGCTGTGAATTTATTCGTTAt > 1:4499362/1‑140 (MQ=255) tGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCATATT‑TTTGGT‑GGCTGTGAATTTATTCGTTAt > 2:600038/1‑140 (MQ=255) gCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCATATT‑TTTGGT‑GGCTGTGAATTTATTCGTTATg < 1:2333385/140‑1 (MQ=255) cATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCCGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCATATT‑TTTGGT‑GGCTGTGAATTTATTCGTTATGa > 1:1391033/1‑140 (MQ=255) cATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCATATT‑TTTGGT‑GGCTGTGAATTTATTCGTTATGa > 1:1956017/1‑140 (MQ=255) cATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCATATT‑TTTGGT‑GGCTGTGAATTTATTCGTTATGa > 1:589175/1‑140 (MQ=255) cATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCATATT‑TTTGGT‑GGCTGTGAATTTATTCGTTATGa > 1:1427595/1‑140 (MQ=255) cATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCATATT‑TTTGGT‑GGCTGTGAATTTATTCGTTATGa > 2:4709655/1‑140 (MQ=255) cATTGCAGTCACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCCAAATCTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCATA‑TGTTTGGT‑GGCTGTGAATTTATTCGTTAtta > 2:815596/1‑138 (MQ=255) aTTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGT‑GGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCATATT‑TTTGGT‑GGCTGTGAATTTATTCGTTATGACg < 2:2097355/140‑1 (MQ=255) ttGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGCGGGGCTATACCCAGAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAGGGGCATATT‑TTTGCT‑GGTTGTGAATTTATTCGTTATGACg > 2:4006153/1‑140 (MQ=255) tGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCATATT‑TTTGGT‑GGCTGTGAATTTATTCGTTATGACGa > 1:3393105/1‑140 (MQ=255) gCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTCTACGCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCATATT‑TTTGGT‑GGCTGTGAATTTATTCGTTATGACGAt < 1:3632830/140‑1 (MQ=255) gCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAACTTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCATATT‑TTTGGT‑GGCTGTGAATTTATTCGTTATGACGAt < 2:3954340/140‑1 (MQ=255) gCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCATATT‑TTTGGT‑GGCTGTGAATTTATTCGTTATGACGAt < 2:3409828/140‑1 (MQ=255) gCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCATATT‑TTTGGT‑GGCTGTGAATTTATTCGTTATGACGAt < 2:4719236/140‑1 (MQ=255) gCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCATATT‑TTTGGT‑GGCTGTGAATTTATTCGTTATGACGAt < 2:623568/140‑1 (MQ=255) gCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCATATT‑TTTGGT‑GGCTGTGAATTTATTCGTTATGACGAt < 1:697540/140‑1 (MQ=255) gCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCATATT‑TTTGGT‑GGCTGTGAATTTATTCGTTATGACGAt < 2:2840592/140‑1 (MQ=255) gCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCATATT‑TTTGGT‑GGCTGTGAATTTATTCGTTATGACGAt < 1:49498/140‑1 (MQ=255) gCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCATATT‑TTTGGT‑GGCTGTGAATTTATTCGTTATGACGAt < 1:3945610/140‑1 (MQ=255) gCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCATATT‑TTTGGT‑GGCTGTGAATTTATTCGTCATGACGAt < 2:3603991/140‑1 (MQ=255) aCGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTTCCTGATGCCACTGGCGGCTGAAGGGCATAGT‑TTTGGT‑GGCTGTGAATTTATTCGTTATGACGATCGcccc > 2:1357393/1‑140 (MQ=255) aCGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGGTGCCACTGGCGGCGGAAGGGCATATT‑TTTGGT‑GGCTGTGAATTTATTCGTTATGACGATCGcccc > 2:4350012/1‑140 (MQ=255) aCGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCATATT‑TTTGGT‑GGCTGTGAATTTATTCGTTATGACGATCGcccc > 1:1786598/1‑140 (MQ=255) aCGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCATATT‑TTTGGT‑GGCTGTGAATTTATTCGTTATGACGATCGcccc < 1:2524164/140‑1 (MQ=255) gaaTTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCATATT‑TTTGGT‑GGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAg < 1:4082161/140‑1 (MQ=255) ttttGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCATATT‑TTTGGT‑GGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGa > 1:1577083/1‑140 (MQ=255) ttGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTCTACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCATATT‑TTTGGT‑GGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGaaa < 1:5038330/140‑1 (MQ=255) tgtgAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAACATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCATATT‑TTTGGT‑GGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGaaaa < 2:4124105/140‑1 (MQ=255) gtgAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCATATT‑TTTGGT‑GGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGaaaaa < 2:1002542/140‑1 (MQ=255) gtgAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCATATT‑TTTGGT‑GGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGaaaaa < 2:325242/140‑1 (MQ=255) aCCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCATATT‑TTTGGT‑GGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGtt < 1:5073200/140‑1 (MQ=255) ccTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCATATT‑TTTGGT‑GGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTc > 1:4558974/1‑140 (MQ=255) cTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCATATT‑TTTGGT‑GGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCa < 2:3683527/140‑1 (MQ=255) ggCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCATATT‑TTTGGT‑GGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAAt < 1:3344089/140‑1 (MQ=255) gCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCATATT‑TTTGGT‑GGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGc > 1:2244468/1‑140 (MQ=255) gCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCATATT‑TTTGGT‑GGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGc > 1:77980/1‑140 (MQ=255) cTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCATATT‑TTTGGT‑GGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCa < 1:1315019/140‑1 (MQ=255) cTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCATATT‑TTTGGT‑GGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCa < 2:2709049/140‑1 (MQ=255) cTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCATATT‑TTTGGT‑GGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCa < 2:530313/140‑1 (MQ=255) gACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCATATT‑TTTGGT‑GGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAAc > 1:4262811/1‑140 (MQ=255) aGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCATATT‑TTTGGT‑GGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTa < 2:3776464/140‑1 (MQ=255) gTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTTGCGGCGGAAGGGCATATT‑TTTGGT‑GGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCTAAAAAGAGTTCAATCGTCTGCAAACATTTACg > 1:2888119/1‑140 (MQ=255) gTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCATATT‑TTTGGT‑GGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACg < 2:1663706/140‑1 (MQ=255) gTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCATATT‑TTTGGT‑GGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACg < 1:1471323/140‑1 (MQ=255) gTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCATATT‑TTTGGT‑GGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACg < 2:4071128/140‑1 (MQ=255) gCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCATATT‑TTTGGT‑GGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGa < 1:3494926/140‑1 (MQ=255) cTATACACAAAAATTGGTCACTAGTGCCTGATGCCACGGGCGGCGGAAGGGCATATT‑TTTGGT‑GGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGTGTTCAATCGTCTGCAAACATTTACGCAGAt < 2:3511659/140‑1 (MQ=255) taCCCTAAATTTGGTCACTATTGCCTGATGGCACTGTGGGCGGAAGGGCATA‑T‑TTTTGTCGGCTGTTAATTTGTTGGTGATGACGATCGCGCCTGGTGGGACACAGAGTTCAATCGTGTGCAAACATTTACGCATATctt > 2:1844056/1‑138 (MQ=255) taCCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCATATT‑TTTGTT‑TGCGGTGATTTTAGTCGTTATGACGAGCGCCCCTGGAGCGAAAAAGAGGTCAATCGTCTGCAAACATTTACGCACATCGt > 1:2987964/1‑140 (MQ=255) taCCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCATATT‑TTTGGT‑GGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGt > 2:3110444/1‑140 (MQ=255) cccAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCATATT‑TTTGGT‑GGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGttt < 2:2648606/140‑1 (MQ=255) ggTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCATATT‑TTTGGT‑GGCTGTGAATTTATTCGTTATGACGATCGCCCCTTGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTGTCGTCAc < 2:4874373/140‑1 (MQ=255) ggTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCATATT‑TTTGGT‑GGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTGTCGTCAc > 1:922023/1‑140 (MQ=255) gTCACTATTGCCTGATGCCACTGGCGGCGGAATGGCATATT‑TTTGGT‑GGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATGTACGCAGATCTTTTCTGTCATCAcc > 2:1606564/1‑140 (MQ=255) tCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCATATT‑TTTGGT‑GGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTGTCGTCACCg < 1:3836162/140‑1 (MQ=255) cTATTGCCTGATGCCACTGGCGGCGGAAGGGCATATT‑TTTGGT‑GGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTGTCGTCACCGAAc < 1:967445/140‑1 (MQ=255) cTGATGCCACTGGCGGCGGAAGGGCATATT‑TTTGGT‑GGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTGTCGTCACCGAACAAATCCa < 2:2399645/140‑1 (MQ=255) tGCCACTGGCGGCGGAAGGGCATATT‑TTTGGT‑GGCTGTGAATTTATTCGTTCTGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTGTCGTCACCGAACAAATCCAGAGc > 1:3035728/1‑140 (MQ=255) tGCCACTGGCGGCGGAAGGGCATATT‑TTTGGT‑GGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTGTCGTCACCGAACAAATCCAGAGc > 1:4144202/1‑140 (MQ=255) tGCCACTGGCGGCGGAAGGGCATATT‑TTTGGT‑GGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTGTCGTCACCGAACAAATCCAGAGc > 2:1281282/1‑140 (MQ=255) tGCCACTGGCGGCGGAAGGGCATATT‑TTTGGT‑GGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTGTCGTCACCGAACAAATCCAGAGc > 1:3768454/1‑140 (MQ=255) tGCCACTGGCGGCGGAAGGGCATATT‑TTTGGT‑GGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTGTCGTCACCGAACAAATCCAGAGc > 1:1676077/1‑140 (MQ=255) tGCCACTGGCGGCGGAAGGGCATATT‑TTTGGT‑GGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTGTCGTCACCGAACAAATCCAGAGc > 2:2507609/1‑140 (MQ=255) tGCCACTGGCGGCGGAAGGGCATATT‑TTTGGT‑GGCTGTGAATTTATGCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGGCTGCAAACATTTAGGCAGATCGTTTCTGTCGTCACCGAACAAAGCCAGAGc > 2:1192807/1‑140 (MQ=255) tGCCACTGGCGGCGGAAGCGCATATT‑TTTGGT‑GGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAACAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTGTCGTCACCGAACAAATCCagagg > 1:4682731/1‑139 (MQ=255) ccACTGGCGGCGGAAGGGCATATT‑TTTGGT‑GGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTGTCGTCACCGAACAAATCCAGAGCcg > 1:55407/1‑140 (MQ=255) cTGGCGGCGGAAGGGCATATT‑TTTGGT‑GGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTGTCGTCACCGAACAAATCAAGAGCAGcgt < 2:4558974/140‑1 (MQ=255) tGGCGGCGGAAGGGCATATT‑TTTGGT‑GGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTGTCGTCACCGAACAAATCCAGAGCCGcgtc < 2:733640/140‑1 (MQ=255) tGGCGGCGGAAGGGCATATT‑TTTGGT‑GGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTGTCGTCACCGAACAAATCCAGAGCCGcgtc < 2:2299981/140‑1 (MQ=255) gcggcgGAAGGGCATATT‑TTTGGT‑GGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTGTCGTCACCGAACAAATCCAGAGCCGcgtcgt < 1:313257/140‑1 (MQ=255) cggcggAAGGGCATATT‑TTTGGT‑GGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTGTCGTCACCGAACAAATCCAGAGCCGCGTCGtt > 2:293675/1‑140 (MQ=255) ggcggAAGGGCATATT‑TTTGGT‑GGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTGTCGTCACCGAACAAATCCAGAGCCGCGTCGTTa < 2:2780360/140‑1 (MQ=255) ggAAGGGCATATT‑TTTGGT‑GGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTGTCGTCACCGAACAAATCCAGAGCCGCGTCGTTAACa < 1:1222091/140‑1 (MQ=255) aGGGCATATT‑TTTGGT‑GGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTGTCGTCACCGAACAAATCCAGAGCCGCGTCGTTAACAATg < 2:1406138/140‑1 (MQ=255) gggCATATT‑TTTGGT‑GGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTGTCGTCACCGAACAAATCCAGAGCCGCGTCGTTAACAATGt < 2:3913489/140‑1 (MQ=255) | CGCAGCATTTTGTCGCGCCCTGATACGCTGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCATA‑T‑TTTGGT‑GGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTGTCGTCACCGAACAAATCCAGAGCCGCGTCGTTAACAATGTCG > NZ_CP025268/2858610‑2858882 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |