| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP025268 | 3,864,439 | +C | pseudogene (1083/1613 nt) | CXP41_RS20140 ← | PTS sugar transporter subunit IIB |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP025268 | 3,864,437 | 1 | . | C | 97.5% | 1036.2 / 16.0 | 316 | pseudogene (1085/1613 nt) | CXP41_RS20140 | PTS sugar transporter subunit IIB |
| Reads supporting (aligned to +/- strand): ref base . (4/4); new base C (170/138); total (174/142) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 338 total aligned reads displayed.
GCAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTCAATCAGACCT‑CCG‑C‑CATGTT‑‑‑CACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATG > NZ_CP025268/3864298‑3864568 | cAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCG‑c > 1:1118713/1‑140 (MQ=255) aGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGGTCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCG‑c > 1:4683815/1‑139 (MQ=255) gtgtGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑CATGTTg > 2:1870757‑M1/1‑139 (MQ=255) gtgtGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑CATGTTg < 1:4421855‑M1/140‑2 (MQ=255) gtgtGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑CATGTTg < 1:1495461‑M1/140‑2 (MQ=255) gtgCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑CATGTTgcc > 1:4325165‑M1/1‑137 (MQ=255) gcgCGGAAAACCACGAAGCACCGCAGGGTAAAGCACAACCCAATGGCGATGTGGGTCAGCATCATATCCGCGTGGTTGCTCAACATCGCGACCCAGTTTTTCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑CATGttgcc < 2:2871021/138‑4 (MQ=255) gCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑CATGTTgccca < 1:4205174‑M1/140‑6 (MQ=255) gCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑CATGTTgccca < 1:3965568‑M1/140‑6 (MQ=255) cGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑CATGTTgcccac > 1:4393776‑M1/1‑134 (MQ=255) cGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑CATGTTgcccac > 2:1193382‑M1/1‑134 (MQ=255) cGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑CATGTTg < 2:4396933‑M1/135‑2 (MQ=255) ggAAAACCACGACGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑CATGTTgcccacc < 2:3593065‑M1/140‑8 (MQ=255) ggAAAACCACCAAGTTCATCAGGGTATAGCACATCCGATTTTCGATTTGGGTCAGCGTCATATCCGGGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCATTCAGAACT‑CCGCC‑CATGTT‑‑‑ccccacc < 2:1038340/140‑2 (MQ=255) gAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑CATGTTgcccacca < 1:1960597‑M1/140‑9 (MQ=255) gAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑CATGTTgcccacca < 2:1829330‑M1/140‑9 (MQ=255) aaCCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑CATGTTgcccaccacac < 1:4408855‑M1/140‑12 (MQ=255) aCCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑CATGTTgcccaccacacc < 1:5006469‑M1/140‑13 (MQ=255) ccACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑CATGTTgcccaccacacca < 1:1254048‑M1/140‑14 (MQ=255) ccACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGAATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑CATGTTgcccaccacacca < 2:4082054‑M1/140‑14 (MQ=255) cACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑CATGTTgcccaccacaccaa > 2:3304716‑M1/1‑126 (MQ=255) cACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAAACTAGTCAATCAGACCT‑CCGCC‑CATGTTgcccaccacaccaa < 1:2833023‑M1/140‑15 (MQ=255) aCGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑CATGTTgcccaccacaccaaa < 1:2153780‑M1/140‑16 (MQ=255) cGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑CATGTTgcccaccacaccaaag < 2:5056649‑M1/140‑17 (MQ=255) cagcagGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑CATGTTgcccaccacaccaaagagataca < 2:4964595‑M1/140‑24 (MQ=255) gcagGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑CATGTTgcccaccacaccaaagagatacatt < 1:1043915‑M1/140‑26 (MQ=255) agGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑CATGTTgcccaccacaccaaagagatacattac < 1:3493409‑M1/140‑28 (MQ=255) ggTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCTGACCT‑CCGCC‑CATGTTgcccaccacaccaaagagatacattacgg > 1:2735300‑M1/1‑111 (MQ=255) ggTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑CATGTTgcccaccacaccaaagagatacattacgg > 1:2546361‑M1/1‑111 (MQ=255) ggTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑CATGTTgcccaccacaccaaagagatacattacgg > 1:1211179‑M1/1‑111 (MQ=255) ggTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑CATGTTgcccaccacaccaaagagatacattacgg > 2:254047‑M1/1‑111 (MQ=255) gTAAAGCACAACCAAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑CATGTTgcccaccacaccaaagagatacattacggt < 2:3842568‑M1/140‑31 (MQ=255) tAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑CATGTTgcccaccacaccaaagagatacattacggtc > 2:4692944‑M1/1‑109 (MQ=255) tAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑CATGTTgcccaccacaccaaagagatacattacggtc > 1:205676‑M1/1‑109 (MQ=255) tAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑CATGTTgcccaccacaccaaagagatacattacggtc > 1:4565503‑M1/1‑109 (MQ=255) tAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑CATGTTgcccaccacaccaaagag < 1:2008187‑M1/127‑19 (MQ=255) tAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGGAAAACCTAGTCAATCAGACCT‑CCGCC‑CATGTTgcccaccacaccaaagagatacattacagtc > 2:759972‑M1/1‑109 (MQ=255) tAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATAGCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAACACCTAGTCAATCAGACCT‑CCGCC‑CATGTTgcccaccacacaaaagagatacattacggtc > 2:2391484‑M1/1‑109 (MQ=255) aGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑CATGTTgcccaccacaccaaagagatacattacggtcgac > 1:2986490‑M1/1‑106 (MQ=255) aGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑CATGTTgcccaccacaccaaagagatacattacggtcgac > 1:2654989‑M1/1‑106 (MQ=255) cacaACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacat > 1:136789‑M1/1‑104 (MQ=255) cccaCCCACTAGCGATTTGGTTCCGCATCATATCTGCCTGGTTGCTGAACATCGGAATCCAGTTTTACGGTAAAACCCAGTCAAGCAGACCT‑CCG‑CTCATTTTTCCCACCACACCAAAGAGATACATTACGGTCGACAtt < 2:3395770/137‑1 (MQ=255) aaCCCAATGGCGATTTGGGTCAGCATCATATGCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑CATGTTgcccaccacaccaaagagatacagtacggtcgaaattga > 2:421607‑M1/1‑101 (MQ=255) aaCCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattga > 1:3471518‑M1/1‑101 (MQ=255) aaCCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattga > 2:3524110‑M1/1‑101 (MQ=255) aaCCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattga > 1:168833‑M1/1‑101 (MQ=255) aCCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgag < 2:1564425‑M1/140‑41 (MQ=255) cccAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCATACCT‑CCGCC‑CATGTTgcccaccagaccaaagagatacattacggtcgacattgagg > 2:1286184‑M1/1‑99 (MQ=255) cccAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑CATGTTgcccaccacaccaagagatacattacggtcgacattgaggc > 1:2264175‑M1/1‑99 (MQ=255) cccAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgagg > 1:2427049‑M1/1‑99 (MQ=255) cccatggCGCCTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTCGTCACTCAGACCT‑CCGCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggc < 1:3900402‑M1/137‑43 (MQ=255) cGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagc < 1:4702812‑M1/140‑50 (MQ=255) cGATTTGGGTCAGCATCATATACGCGTGGTTGCTGAACATCGGGATCCATTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagc < 2:557612‑M1/140‑50 (MQ=255) cGATTTGGGTCAGCACCATATCCGAGTTGGTGCGTAACATCGTGATCCAGTTTTGCAGTAAAACCGAGTCAATCAGACTTCCCC‑C‑CATGTTGCCCACAACACCAAATACATACATTACCGTCGACATTGAGGCCGCCAGc < 2:3087249/140‑1 (MQ=255) aTTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTGAATCAGACCT‑CCGCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcac > 2:4542208‑M1/1‑89 (MQ=255) aTTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcac > 1:3715871‑M1/1‑89 (MQ=255) tttGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑CATGTTgcccaccaaaccaaagagatacattacggtcgacattgaggccgccagcacg < 2:4665437‑M1/140‑53 (MQ=255) tGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggc < 1:2990122‑M1/140‑55 (MQ=255) cAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgta < 1:4853939‑M1/140‑60 (MQ=255) tcatATCCGCGTGGTTGCTAAACATCGGGATCCAGTTTTGCGGTAAAACCCAGTCAATCAGACCT‑CCGCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgca < 2:3189666‑M1/140‑65 (MQ=255) atatCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaa < 1:4377239‑M1/140‑67 (MQ=255) tatCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaac > 2:848258‑M1/1‑73 (MQ=255) tatCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaac > 2:2135996‑M1/1‑73 (MQ=255) gcgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaa > 1:4119383‑M1/1‑68 (MQ=255) gcgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaa > 2:3669997‑M1/1‑68 (MQ=255) cgTGGTTGCTGAACATCGGGATCCATTTTTGCGGTAAAACCTAGTCAATCAGGCCT‑CCGCC‑CATGTTgcccaccacaccaaagtgatacattacggtcgacattgaggccgccagcacggcgtgtagcgcaaacagcaac > 1:1613478‑M1/1‑67 (MQ=255) cgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaac > 2:1951715‑M1/1‑67 (MQ=255) cgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaac > 2:2251978‑M1/1‑67 (MQ=255) cgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaac > 1:2133560‑M1/1‑67 (MQ=255) cgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaac > 2:1256238‑M1/1‑67 (MQ=255) cgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgggtaccgcaaacagcaac > 2:4389212‑M1/1‑67 (MQ=255) tGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacgg > 1:686030‑M1/1‑65 (MQ=255) gTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtg > 2:2689244‑M1/1‑63 (MQ=255) ttGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtga > 2:635311‑M1/1‑62 (MQ=255) aaCATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaa < 1:3669945‑M1/140‑85 (MQ=255) tCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacagg > 1:19414‑M1/1‑52 (MQ=255) tCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacagg > 1:5054600‑M1/1‑52 (MQ=255) cGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacagga > 1:239426‑M1/1‑51 (MQ=255) ggATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacatcgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaag > 2:955651‑M1/1‑49 (MQ=255) gATCCAGTTTTGCGGTATAACCTAGTCAATCAGCCCT‑CCGCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaagg < 2:4053533‑M1/140‑93 (MQ=255) cAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaa > 1:842294‑M1/1‑44 (MQ=255) tGCGGTACAACCTAGTCAATCAGACCT‑CCGCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcactgcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccag < 2:3955979‑M1/140‑103 (MQ=255) tGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccag > 1:3364241‑M1/1‑38 (MQ=255) tGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccag > 1:587198‑M1/1‑38 (MQ=255) tGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑CATGCTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccag < 1:832047‑M1/140‑103 (MQ=255) ggTAAACCCTAGTCACTCAGACCT‑CCGCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcgg < 2:2901836‑M1/140‑106 (MQ=255) ggTAAAACCTATTCAAGCAGACCT‑CCGCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcgg < 2:1077861‑M1/140‑106 (MQ=255) ggTAAAACCTAGTCAATCAGACCT‑CCGCC‑CATGTTccccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcgg < 1:3439036‑M1/140‑106 (MQ=255) tAAAACCTAGTCAATCAGACCT‑CCGCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcggtt > 1:3185123‑M1/1‑33 (MQ=255) tCAATCAGACCT‑CCGCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcggttcggtaattcc > 2:434920‑M1/1‑23 (MQ=255) tCAATCAGACCT‑CCGCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcggttcggtaattcc > 1:129725‑M1/1‑23 (MQ=255) aaTCAGACCT‑CCGCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcggttcggtaattccca > 2:1668836‑M1/1‑21 (MQ=255) aaTCAGACCT‑CCGCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcggttcggtaattccca > 2:2575364‑M1/1‑21 (MQ=255) tCAGACCT‑CCGCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcggttcggtaattctcacc > 1:1869327‑M1/1‑19 (MQ=255) cAGACCT‑CCGCC‑CATGTTgcccaccacaccaaagcgatacattacggtcgccattgaggccgccagcacgtcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcggttcggtaattcccacca > 1:3296131‑M1/1‑18 (MQ=255) cAGACCT‑CCGCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcggttcggtaattcccacca > 1:1733112‑M1/1‑18 (MQ=255) aCCT‑CCGCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcggttcggtaattcccaccagca < 1:808931‑M1/140‑126 (MQ=255) ccT‑CCGCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcggttcggtaattcccaccagcat < 1:879467‑M1/140‑127 (MQ=255) cT‑CCGCC‑CATGTTgcccaccacaccaaatagatacattacggtcgacgttgagtccgccagcacggcgtgtaccgcaaacagcaacggtgaaaggaacaggaatgtaaattccagcggttctgtaattcccaccagcatg > 1:1807169‑M1/1‑13 (MQ=255) cT‑CCGCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcggttcggtaattcccaccagcatg > 2:2972431‑M1/1‑13 (MQ=255) | GCAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTCAATCAGACCT‑CCG‑C‑CATGTT‑‑‑CACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATG > NZ_CP025268/3864298‑3864568 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |