Predicted mutation | ||||||
---|---|---|---|---|---|---|
evidence | seq id | position | mutation | annotation | gene | description |
RA | NZ_CP025268 | 400,598 | +G | pseudogene (162/260 nt) | iraP → | anti‑adapter protein IraP |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NZ_CP025268 | 400,594 | 1 | . | G | 97.0% | 327.9 / 3.5 | 100 | pseudogene (158/260 nt) | iraP | anti‑adapter protein IraP |
Reads supporting (aligned to +/- strand): ref base . (2/1); new base G (58/39); total (60/40) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01 |
Only 100 of 116 total aligned reads displayed.
GTTATTTAAGCTTGCCCAAAAAGAAGAAGAGTCGAAAGAACTGTGTGCGCAGGTAGAAGCTTTGGAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAG‑A‑GGG‑GCGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGTCATAAAGT > NZ_CP025268/400460‑400728 | gttATTTAAGCTTGCCCAAAAAGAAGAAGAGTCGAAAGAACTGTGTGCGCAGGTAGAAGCTTTGGAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAG‑A‑ggg‑gg < 1:1067867/140‑2 (MQ=255) gttATTTAAGCTTGCCCAAAAAGAAGAAGAGTCGAAAGAACTGTGTGCGCAGGTAGAAGCTTTGGAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAG‑A‑ggg‑gg < 1:3929226/140‑2 (MQ=255) ttATTTAAGCTTGCCCAAACAGAAGAAGAGTCGAACGAACTGTGTGCGCAGGTAGAAGCTTTGGCGATTATCGTCACTGCAATGCTTCGCAGTATGGCGCAAAATTGCCAACAGCGGTTGATTTGTCAGGTAG‑C‑ggtgtc > 2:3694107/1‑136 (MQ=255) ttATTTAAGCTTGCCCAAAAAGAAGAAGAGTCGAAAGAACTGTGTGCGCAGGTAGAAGCTTTGGAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAG‑A‑ggg‑ggc < 1:3136091/140‑3 (MQ=255) ttATTTAAGCTTGCCCAAAAAGAAGAAGAGTCGAAAGAACTGTGTGCGCAGGTAGAAGCTTTGGAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAG‑A‑ggg‑ggc < 1:1590022/140‑3 (MQ=255) tATTTAAGCTTGCCCAAAAAGAAGAAGAGTCGAAAGAACTGTGTGCGCAGGTAGAAGCTTTGGAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAG‑A‑ggg‑ggcg < 1:3863451/140‑4 (MQ=255) tATTTAAGCTTGCCCAAAAAGAAGAAGAGTCGAAAGAACTGTGTGCGCAGGTAGAAGCTTTGGAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAG‑A‑ggg‑ggcg < 2:3890322/140‑4 (MQ=255) tATTTAAGCTTGCCCAAAAAGAAGAAGAGTCGAAAGAACTGTGTGCGCAGGTAGAAGCTTTGGAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAG‑A‑ggg‑ggcg < 2:3941486/140‑4 (MQ=255) tATTTAAGCTTGCCCAAAAAGAAGAAGAGTCGAAAGAACTGTGTGCGCAGGTAGAAGCTTTGGAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAG‑A‑ggg‑ggcg < 2:3504470/140‑4 (MQ=255) tATTTAAGCTTGCCCAAAAAGAAGAAGAGTCGAAAGAACTGTGTGCGCAGGTAGAAGCTTTGGAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAG‑A‑ggg‑ggcg < 2:41170/140‑4 (MQ=255) tATTTAAGCTTGCCCAAAAAGAAGAAGAGTCGAAAGAACTGTGTGCGCAGGTAGAAGCTTTGGAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAG‑A‑ggg‑ggcg < 1:4078506/140‑4 (MQ=255) tATTTAAGCTTGCCCAAAAAGAAGAAGAGTCGAAAGAACTGTGTGCGCAGGTAGAAGCTTTGGAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAG‑A‑ggg‑ggcg < 1:96225/140‑4 (MQ=255) tATTTAAGCTTGCCCAAAAAGAAGAAGAGTCGAAAGAACTGTGTGCGCAGGTAGAAGCTTTGGAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAG‑A‑ggg‑ggcg < 2:1664538/140‑4 (MQ=255) tATTTAAGCTTGCCCAAAAAGAAGAAGAGTCGAAAGAACTGTGTGCGCAGGTAGAAGCTTTGGAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAG‑A‑ggg‑ggcg < 1:1060597/140‑4 (MQ=255) tttAAGCTTGCCCAAAAAGAAGAAGAGTCGAAAGAACTGTGTGCGCAGGTAGAAGCTTTGGAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAG‑A‑ggg‑ggcgct < 1:2704526/140‑6 (MQ=255) aGCTTGCCCAAAAAGAAGAAGAGTCGAAAGAACTGTGTGCGCAGGTAGAAGCTTTGGAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAG‑AGGGG‑GCGCTGTAc < 1:3465713/140‑1 (MQ=255) aGCTTGCCCAAAAAGAAGAAGAGTCGAAAGAACTGTGTGCGCAGGTAGAAGCTTTGGAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAG‑AGGGG‑GCGCTGTAc < 2:2314762/140‑1 (MQ=255) gCTTGCCCAAAAAGAAGAAGAGTCGAAAGAACTGTGTGCGCAGGTAGAAGCTTTGGAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAG‑AGGGG‑GCGCTGTACg < 1:3374677/140‑1 (MQ=255) ttGCCCAAAAAGAAGAAGAGCCGAAAGAACTGTGTGCGCAGGTAGAAGCTTTGGAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAG‑AGGGG‑GCGCTGTACGAg > 1:189469/1‑140 (MQ=255) tGCCCAAAAAGAAGAATAGTCGAAAGAACTGTGTGCGCAGGTAGAAGCTGTGGAGATTATCGTCACTGCAATGCGTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAG‑AGGGG‑GCGCTGTACGAgg > 2:651809/1‑140 (MQ=255) cccAAAAAGAAGAAGAGTCGAAAGAACTGTGTGCGCAGGTAGAAGCTTTGGAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAG‑AGGGG‑GCGCTGTACGAGGTa > 2:4458219/1‑140 (MQ=255) cccAAAAAGAAGAAGAGTCGAAAGAACTGTGTGCGCAGGTAGAAGCTTTGGAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAG‑AGGGG‑GCGCTGTACGAGGTa > 1:2287719/1‑140 (MQ=255) cccAAAAAGAAGAAGAGTCGAAAGAACTGTGTGCGCAGGTAGAAGCTTTGGAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAG‑AGGGG‑GCGCTGTACGAGGTa > 2:3775976/1‑140 (MQ=255) cccAAAAAGAAGAAGAGTCGAAAGAACTGTGTGCGCAGGTAGAAGCTTTGGAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAG‑AGGGG‑GCGCTGTACGAGGTa > 1:3622112/1‑140 (MQ=255) cccAAAAAGAAGAAGAGTCGAAAGAACTGTGTGCGCAGGTAGAAGCTTTGGAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGAACAACAGAGGTTGATTGAACAGGTAG‑AGGGG‑GCGATGTACGAggaa > 2:3775988/1‑138 (MQ=255) cccAAAAAGAAGAAGAGTCGAAAGAACTGTGTGCGCAGGTAGAAGCATTGGAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGCTGATCGATCAGGTAG‑AGGGG‑GCGCTGTACGAGGTa > 1:4045992/1‑140 (MQ=255) aaaGAAGAAGAGTCGAAAGAACTGTGTGCGCAGGTAGAAGCTTTGGAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAG‑AGGGG‑GCGCTGTACGAGGTAAAGcc > 2:1198755/1‑140 (MQ=255) aaaGAAGAAGAGTCGAAAGAACTGTGTGCGCAGGTAGAAGCTTTGGAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAG‑AGGGG‑GCGCTGTACGAGGTAAAGcc > 1:2109435/1‑140 (MQ=255) gaagaGTCGAAAGAACTGTGTGCGCAGGTAGAAGCTTTGGAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAG‑AGGGG‑GCGCTGTACGAGGTAAAGCCCGATGc > 1:2915368/1‑140 (MQ=255) tCGAAAGAACTGTGTGCGCAGGTAGAAGCTTTGGAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAAAAGCGGTTGATTGATCAGGTAG‑AGGGG‑GCGCTGTACGAGGTAAAGCCCGATGCCAGTAt > 1:4237301/1‑140 (MQ=255) gAACTGTGTGCGCAGGTAGAAGCTTTGGAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAG‑AGGGG‑GCGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTga < 1:1978741/140‑1 (MQ=255) aCTGTGTGCGCAGGTAGAAGCTTTGGAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAG‑AGGGG‑GCGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTgacg < 2:2980130/140‑1 (MQ=255) cTGTGTGCGCAGGTAGAAGCTTTGGAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAG‑AGGGG‑GCGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTgacga < 2:2520924/140‑1 (MQ=255) cTGTGTGCGCAGGTAGAAGCTTTGGAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAG‑AGGGG‑GCGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTgacga < 2:3515809/140‑1 (MQ=255) atgtgtgCGCAGGTAGAAGCTTTGCAGATTATCGTAATTGCAATCCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTAATTCATCAGGTAG‑AGGGG‑GCGCTCTACGAGGTAAAGCCCGATGCCAGCATGCCTgacga < 2:3057536/139‑1 (MQ=255) gtgCGCAGGTAGAAGCTTTGGAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAG‑AGGGG‑GCGCTGTACGAGGTAAAGCCCGATGCCAGCATGCCTGACGACGAt > 2:2890569/1‑140 (MQ=255) cgcAGGTAGAAGCTTTGGAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAG‑AGGGG‑GCGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACg < 2:662007/140‑1 (MQ=255) aGGTAGACGCTTTGGAGATTATCGTCACTGCCATGCTTCGCAATATGGCGCAAACTGACCAACAGCGGTTGATTGATCAGGTAG‑AGGGG‑GCGCGGTACGAGGTAAAGCCCGATTCCAGCATTCCTGACGACGATACGGAg > 1:2222640/1‑140 (MQ=255) ggTAGAAGCTTTGGAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAG‑AGGGG‑GCGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAgc > 1:842406/1‑140 (MQ=255) tAGAAGCTTTGGAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAG‑AGGGG‑GCGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAgctg > 2:3865168/1‑140 (MQ=255) tAGAAGCTTTGGAGATTACCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAG‑AGGGG‑GCGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAgctg > 2:4451027/1‑140 (MQ=255) gAAGCTTTGGAGATTATCGTCACTGCAATGCTTCGCAATATGNCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAG‑AGGGG‑GCGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAgctgct > 1:241400/1‑140 (MQ=255) aaGCTTTGGAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAG‑AGGGG‑GCGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGctgctg < 1:4330390/140‑1 (MQ=255) tttGGAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGCTGATTGATCAGGTAG‑AGGGG‑GCGCTGTACGAGGGAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGcgcg > 1:987519/1‑140 (MQ=255) tGGAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAG‑AGGGG‑GCGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGAt > 1:2444092/1‑140 (MQ=255) tGGAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAG‑AGGGG‑GCGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGAt > 1:4417541/1‑140 (MQ=255) tGGAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAG‑AGGGG‑GCGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGAt > 1:3196523/1‑140 (MQ=255) tGGAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAG‑AGGGG‑GCGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGAt > 1:2444160/1‑140 (MQ=255) tGGAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAG‑AGGGG‑GCGCTGGACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGAt > 2:4517361/1‑140 (MQ=255) ggAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAG‑AGGGG‑GCGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGAtt < 2:324938/140‑1 (MQ=255) ggAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAG‑AGGGG‑GCGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGAtt < 1:630285/140‑1 (MQ=255) tATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAG‑AGGGG‑GCGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTgacga < 1:4707103/111‑1 (MQ=255) aTCGTCGCTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAG‑AGGGG‑GCGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTaaa > 2:783649/1‑140 (MQ=255) aTCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAG‑AGGGG‑GCGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTaaa < 1:1159212/140‑1 (MQ=255) aTCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAG‑AGGGG‑GCGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTaaa < 1:1159471/140‑1 (MQ=255) aTCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAG‑AGGGG‑GCGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTaaa < 1:4922410/140‑1 (MQ=255) tCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAG‑AGGGG‑GCGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAaag < 1:1198755/140‑1 (MQ=255) tCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAG‑AGGGG‑GCGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAaag > 2:576982/1‑140 (MQ=255) cGTCACTGCAATGCATCGCAATATGGCGCAAAATGACCCACAGCGGTTGATTGATCAGGTAG‑A‑GGGCGCGCCGAACGAGGTAAAGCCAGATCCCAGCATTACTGACGACGATACGGAGCTGCTGCGCGATTACGTAaaga < 2:1326580/140‑1 (MQ=255) aCTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAG‑AGGGG‑GCGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGtt > 1:3750572/1‑140 (MQ=255) cTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAG‑AGGGG‑GCGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTa < 1:1477022/140‑1 (MQ=255) aTGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAG‑AGGGG‑GCGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGaa < 2:4934164/140‑1 (MQ=255) tGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAG‑AGGGG‑GCGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAg > 1:2998851/1‑140 (MQ=255) cGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAG‑AGGGG‑GCGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATcc > 2:144904/1‑140 (MQ=255) cGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAG‑AGGGG‑GCGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATcc > 2:4067877/1‑140 (MQ=255) cGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAG‑AGGGG‑GCGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACCGAGCTGCTGCGCGATTACGTAAAGCAGTTACTGAAGCATcc > 2:3422409/1‑140 (MQ=255) cAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAG‑AGGGG‑GCGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTc > 2:2951950/1‑140 (MQ=255) atatGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAG‑AGGGG‑GCGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGt < 2:4594166/140‑1 (MQ=255) tGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAG‑AGGGG‑GCGCTGTACGAGGTAAAGCCCGATGCCAGCCTTCCTGACGACGATAGGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAg > 2:3316873/1‑140 (MQ=255) tGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAG‑AGGGG‑GCGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAg > 1:3732633/1‑140 (MQ=255) tGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAG‑AGGGG‑GCGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAg > 2:442943/1‑140 (MQ=255) tGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAG‑AGGGG‑GCGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAg > 1:2246905/1‑140 (MQ=255) tGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAG‑AGGGG‑GCGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAg > 2:3787381/1‑140 (MQ=255) ggCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAG‑AGGGG‑GCGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGt > 2:4383667/1‑140 (MQ=255) ggCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAG‑AGGGG‑GCGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGt > 2:3219149/1‑140 (MQ=255) gcgcAAAATGACCAACAGCGGTTGATTGATCAGGTAG‑AGGGG‑GCGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTa < 1:1926665/140‑1 (MQ=255) gcgcAAAATGACCAACAGCGGTTGATTGATCAGGTAG‑AGGGG‑GCGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTa < 2:2287719/140‑1 (MQ=255) cgcAAAATGACCAACAGCGGTTGATTGATCAGGTAG‑AGGGG‑GCGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTg < 1:3791487/122‑1 (MQ=255) cgcAAAATGACCAACAGCGGTTGATTGATCAGGTAG‑AGGGG‑GCGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTg > 2:3791487/1‑122 (MQ=255) cgcAAAATGACCAACAGCGGTTGATTGATCAGGTAG‑AGGGG‑GCGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTaa > 2:3834138/1‑140 (MQ=255) cgcAAAATGACCAACAGCGGTTGATTGATCAGGTAG‑AGGGG‑GCGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTaa > 1:4634754/1‑140 (MQ=255) cgcAAAATGACCAACAGCGGTTGATTGATCAGGTAG‑AGGGG‑GCGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTaa > 1:5001109/1‑140 (MQ=255) cAAAATGACCAACAGCGGTTGATTGATCAGGTAG‑AGGGG‑GCGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTaaaa > 1:279332/1‑140 (MQ=255) aGCGGTTGATTGATCAGGTAG‑AGGGG‑GCGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTc > 1:363831/1‑140 (MQ=255) ttgattgaTCAGGTAG‑AGGGG‑GCGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGCCGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAg < 2:189469/140‑1 (MQ=255) ttgattgaTCAGGTAG‑AGGGG‑GCGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGCAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAg < 2:117496/140‑1 (MQ=255) ttgattgaTCAGGTAG‑AGGGG‑GCGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAg < 2:3853326/140‑1 (MQ=255) ttgattgaTCAGGTAG‑AGGGG‑GCGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAg < 2:3925709/140‑1 (MQ=255) ttgattgaTCAGGTAG‑AGGGG‑GCGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAg < 1:3300359/140‑1 (MQ=255) ttgattgaTCAGGTAG‑AGGGG‑GCGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAg < 2:117748/140‑1 (MQ=255) ttgattgaTCAGGTAG‑AGGGG‑GCGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAg < 1:4850811/140‑1 (MQ=255) ttgattgaTCAGGTAG‑AGGGG‑GCGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAg < 1:1636928/140‑1 (MQ=255) ttgattgaTCAGGTAG‑AGGGG‑GCGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAg < 1:136323/140‑1 (MQ=255) ttgattgaTCAGGTAG‑AGGGG‑GCGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAg < 2:5010845/140‑1 (MQ=255) atCAGGTAGAA‑GGG‑GCGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAGGCTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGTCAt > 2:2174922/1‑140 (MQ=255) atCAGGTAG‑AGGGG‑GCGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGTCAt < 1:5099127/140‑1 (MQ=255) atCAGGTAG‑AGGGG‑GCGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGTCAt > 2:2070810/1‑140 (MQ=255) tCAGGTAG‑AGGGG‑GCGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGTCATa > 2:1292261/1‑140 (MQ=255) aGGTAG‑AGGGG‑GCGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGTCATaaa > 2:3657313/1‑140 (MQ=255) gTAG‑AGGGG‑GCGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGTCATAAAGt > 2:4043904/1‑140 (MQ=255) | GTTATTTAAGCTTGCCCAAAAAGAAGAAGAGTCGAAAGAACTGTGTGCGCAGGTAGAAGCTTTGGAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAG‑A‑GGG‑GCGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGTCATAAAGT > NZ_CP025268/400460‑400728 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |