| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC | NZ_CP025268 | 3,864,444 | +GCC | pseudogene (1078/1613 nt) | CXP41_RS20140 ← | PTS sugar transporter subunit IIB |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP025268 | = 3864444 | 7 (0.020) | 300 (1.040) +GCC |
103/270 | 0.1 | 97.8% | pseudogene (1078/1613 nt) | CXP41_RS20140 | PTS sugar transporter subunit IIB |
| ? | NZ_CP025268 | 3864445 = | 7 (0.020) | pseudogene (1077/1613 nt) | CXP41_RS20140 | PTS sugar transporter subunit IIB | |||||
Only 100 of 324 total aligned reads displayed.
AGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTCAATCAGACCT‑CCG‑C‑C‑ATGTT‑‑‑C‑ACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGCGGT > NZ_CP025268/3864306‑3864573 | aGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGtt > 1:4547775/1‑140 (MQ=255) gtgtGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTg < 1:1495461‑M1/140‑2 (MQ=255) gtgCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcc > 2:1800308‑M1/1‑137 (MQ=255) gtgCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcc > 1:2810034‑M1/1‑137 (MQ=255) gtgCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcc < 1:4927240‑M1/140‑4 (MQ=255) gCGGAAAACCACGAAGTACAGCAGGGTAAAGCACACCCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGCATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgccca < 1:484007‑M1/140‑6 (MQ=255) gCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgccca < 1:4205174‑M1/140‑6 (MQ=255) gCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgccca < 1:4591060‑M1/140‑6 (MQ=255) cGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccac > 2:1193382‑M1/1‑134 (MQ=255) cGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTg > 1:4396933‑M1/1‑134 (MQ=255) ggAAAACCACGACGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccacc < 2:3593065‑M1/140‑8 (MQ=255) ggAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGCAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccacc < 1:4392676‑M1/140‑8 (MQ=255) ggAAAACCACCAAGTTCATCAGGGTATAGCACATCCGATTTTCGATTTGGGTCAGCGTCATATCCGGGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCATTCAGAACT‑CCGCC‑C‑ATGTT‑‑‑c‑cccacc < 2:1038340/140‑2 (MQ=255) ccACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacacca < 1:1254048‑M1/140‑14 (MQ=255) cGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaag < 1:5035999‑M1/140‑17 (MQ=255) cGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAATTTTGCGGTAAAACCTAGTCAATCAGACAT‑CCGCC‑C‑ATGTTgcccaccacaccaaaa > 2:3833607‑M1/1‑124 (MQ=255) cGAAGTACAGCAGCGTAACGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGACCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaag < 2:4391508‑M1/140‑17 (MQ=255) aGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACGTAGTCAATCAGACCT‑CCG‑CAC‑ATGTTgcccaccacaccaaagaga < 2:3861485‑M1/140‑20 (MQ=255) aGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagaga < 1:2066167‑M1/140‑20 (MQ=255) tACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagata > 1:3539878‑M1/1‑119 (MQ=255) gcagGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacatt < 1:1043915‑M1/140‑26 (MQ=255) ggTAAAGCACAAGCCATTGGAGATTTGGGTCAGCATAATATCCGCTTGGTTGCTGAACATCGGTGTCCAGGTTTGCGGAAAAACCTAGACAATCAGATGT‑GTG‑CTC‑ATGTTGCAC‑ACCACACCAAAGAGATACATTAccg > 2:5049739/1‑138 (MQ=255) ggTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCTGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacgg > 1:2735300‑M1/1‑111 (MQ=255) ggTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacgg > 1:2546361‑M1/1‑111 (MQ=255) gTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggt < 1:2050622‑M1/140‑31 (MQ=255) tAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTTCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacagtacggtc > 2:2901878‑M1/1‑109 (MQ=255) tAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtc > 2:2294095‑M1/1‑109 (MQ=255) tAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagag > 2:2008187‑M1/1‑109 (MQ=255) tAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CAGCC‑C‑ATGTTgcccaccacatcaaagagatacattacggtc > 2:4205878‑M1/1‑109 (MQ=255) tAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCGGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccacaacaccaaagagatacattacggtc > 2:4624405‑M1/1‑109 (MQ=255) aGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgac > 1:2986490‑M1/1‑106 (MQ=255) aGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgac > 1:2654989‑M1/1‑106 (MQ=255) cccaCCCACTAGCGATTTGGTTCCGCATCATATCTGCCTGGTTGCTGAACATCGGAATCCAGTTTTACGGTAAAACCCAGTCAAGCAGACCT‑CCG‑CTC‑ATTTTTCCC‑ACCACACCAAAGAGATACATTACGGTCGACAtt < 2:3395770/137‑1 (MQ=255) caACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattg > 1:1897311‑M1/1‑102 (MQ=255) aaCCGAATGGCGATTTGGGTCAGCATCATATCCGCGGGGGTGCTGAACATCAGGGTCCAGTTTTGCGGTAAAACCTAGTCCATCAGAGCT‑CCG‑CGC‑ATGTTGG‑CGACCACACCAAAGAGGTACATTGCCGTCGCCATTgt > 2:2808611/1‑139 (MQ=255) aaCCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattga > 2:2160935‑M1/1‑101 (MQ=255) aaCCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattga > 1:168833‑M1/1‑101 (MQ=255) aaCCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacatgga > 1:1402855‑M1/1‑101 (MQ=255) aCCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgag < 2:1906042‑M1/140‑41 (MQ=255) aCCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgag < 2:4369252‑M1/140‑41 (MQ=255) cccAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaagagatacattacggtcgacattgaggc > 1:2264175‑M1/1‑99 (MQ=255) cccAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgagg > 1:1215217‑M1/1‑99 (MQ=255) cccAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgagg > 1:2426731‑M1/1‑99 (MQ=255) aaTGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccg < 1:2373053‑M1/140‑45 (MQ=255) tGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgcc > 1:3345754‑M1/1‑94 (MQ=255) cGATTTGGGTCAGCATCCTATCCGCGTGGTTGCTGCACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagc < 2:767609‑M1/140‑50 (MQ=255) cGATTTGGGTCAGCATCATATACGCGTGGTTGCTGAACATCGGGATCCATTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagc < 2:557612‑M1/140‑50 (MQ=255) cGATTTGGGTCAGCACCATATCCGAGTTGGTGCGTAACATCGTGATCCAGTTTTGCAGTAAAACCGAGTCAATCAGACTTCCCC‑C‑C‑ATGTTGCCC‑ACAACACCAAATACATACATTACCGTCGACATTGAGGCCGCCAGc < 2:3087249/140‑1 (MQ=255) gATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagca < 1:3484440‑M1/140‑51 (MQ=255) tGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggc > 2:727661‑M1/1‑86 (MQ=255) tCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgt < 1:3441516‑M1/140‑59 (MQ=255) catcatATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccg > 1:3930572‑M1/1‑78 (MQ=255) tcatATCCGCGTGGTTGCTAAACATCGGGATCCAGTTTTGCGGTAAAACCCAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgca < 2:3189666‑M1/140‑65 (MQ=255) atatCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaa > 2:2614413‑M1/1‑74 (MQ=255) tatCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaac > 2:848258‑M1/1‑73 (MQ=255) gcgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaa > 2:3669997‑M1/1‑68 (MQ=255) gcgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaa > 1:4698745‑M1/1‑68 (MQ=255) gcgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaa < 2:1323958‑M1/140‑73 (MQ=255) gcgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaa > 1:4119383‑M1/1‑68 (MQ=255) gcgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaa > 1:2135061‑M1/1‑68 (MQ=255) cgTGGTTGCTGAACATCGGGATCCATTTTTGCGGTAAAACCTAGTCAATCAGGCCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagtgatacattacggtcgacattgaggccgccagcacggcgtgtagcgcaaacagcaac > 1:1613478‑M1/1‑67 (MQ=255) cgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaac > 2:1256238‑M1/1‑67 (MQ=255) cgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaac > 1:3774339‑M1/1‑67 (MQ=255) cgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaac > 1:1156817‑M1/1‑67 (MQ=255) tGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggc > 1:1764499‑M1/1‑65 (MQ=255) gTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtg > 2:3508369‑M1/1‑63 (MQ=255) gTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtg < 1:1814574‑M1/140‑78 (MQ=255) tGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaa < 1:4331343‑M1/140‑80 (MQ=255) cATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaaca > 1:3387790‑M1/1‑54 (MQ=255) tCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacattgcggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacagg > 1:713571‑M1/1‑52 (MQ=255) tCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacagg > 1:810204‑M1/1‑52 (MQ=255) cGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacagga > 2:4894529‑M1/1‑51 (MQ=255) cGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCG‑C‑CGATGTTgcgcaccacaccaaagagatacattacgggcgacattgagggcgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacagga > 2:1643282‑M1/1‑51 (MQ=255) ggATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacatcgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaag > 2:955651‑M1/1‑49 (MQ=255) gATCCAGTTTTGCGGTATAACCTAGTCAATCAGCCCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaagg < 2:4053533‑M1/140‑93 (MQ=255) aTCCAGTTTCGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggt < 2:3280742‑M1/140‑94 (MQ=255) cAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaa > 1:842294‑M1/1‑44 (MQ=255) tGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccag < 2:2895237‑M1/140‑103 (MQ=255) tGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccag > 1:587198‑M1/1‑38 (MQ=255) tGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGCTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccag < 1:832047‑M1/140‑103 (MQ=255) ggTAAAACCTATTCAAGCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcgg < 2:1077861‑M1/140‑106 (MQ=255) ggTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcgg < 1:3686465‑M1/140‑106 (MQ=255) ggTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcgg < 2:1538574‑M1/140‑106 (MQ=255) ggTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcgg < 2:2549428‑M1/140‑106 (MQ=255) aaaCCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacagggaggtaaattccagcggttcg > 2:4075300‑M1/1‑31 (MQ=255) aaaCCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcggttcg > 1:4421296‑M1/1‑31 (MQ=255) tAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcggttcggtaat > 1:1948985‑M1/1‑26 (MQ=255) tCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcggttcggtaattcc > 1:129725‑M1/1‑23 (MQ=255) aTCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacaccaacggtgaaatgaacaggaaggtaaattccagcggttcggtaattcccac < 1:3066209‑M1/140‑121 (MQ=255) tCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcggttcggtaattcccacc > 2:4501793‑M1/1‑19 (MQ=255) tCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcggttcggtaattcccacc > 2:2524911‑M1/1‑19 (MQ=255) cAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcggttcggtaattcccacca > 1:3296086‑M1/1‑18 (MQ=255) aCCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcggttcggtaattcccaccagca < 1:196859‑M1/140‑126 (MQ=255) ccT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcggttcggtaattcccaccagcat < 1:879467‑M1/140‑127 (MQ=255) cT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcggttcggtaattcccaccagcatg < 2:4245952‑M1/140‑128 (MQ=255) cT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcggttcggtaattcccaccagcatg > 2:2972431‑M1/1‑13 (MQ=255) cT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcggttcggtaattcccaccagcatg < 2:1865339‑M1/140‑128 (MQ=255) cgcc‑c‑atgTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcggttcggtaattcccaccagcatggcg > 1:508150‑M1/4‑10 (MQ=255) cgcc‑c‑atgTTgcccaccacacaaaagagatacattacgggcgacattgaggccgccaggacggcgtgtaccgcaaacagcaacggtgaaaggaaccggaaggtaaattccagcggttcggtaattcccaccagcatggcg > 2:511987‑M1/4‑10 (MQ=255) c‑c‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcggttcggtaattcccaccagcatggcggtt < 1:3160632‑M1/140‑134 (MQ=255) | AGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTCAATCAGACCT‑CCG‑C‑C‑ATGTT‑‑‑C‑ACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGCGGT > NZ_CP025268/3864306‑3864573 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |