Predicted mutation
evidence seq id position mutation annotation gene description
RA NZ_CP025268 1,371,754 T→C *326* (TAA→TAG pspF ← phage shock protein operon transcriptional activator

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NZ_CP0252681,371,7540TC99.0% 962.3 / NA 289*326* (TAA→TAGpspFphage shock protein operon transcriptional activator
Reads supporting (aligned to +/- strand):  ref base T (0/0);  major base C (167/119);  minor base A (1/2);  total (168/121)
Fisher's exact test for biased strand distribution p-value = 5.74e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 289 total aligned reads displayed.

TGCGCTGAGCGATTAATAGCCCAACGCAATAATGTCTGATGCGCTGCGCTTATCAGGCCTGCAAACGACGTATTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGTTAAATCTGGTGCTTTTTCAACAACGCGCGGAACTGATGATAAGTTAACCCCAGTAATTCAGCCGCGCGCTTCTGGTTATATTTCCCTTGTTGCAAACTGAGTTGCAGCAACTCTTTTTCCTGCTGCATCTGAAACT  >  NZ_CP025268/1371619‑1371890
                                                                                                                                       |                                                                                                                                        
       aGCGATTAATAGCCCAACGCAATAATGTCTGATGCGCTGCGCTTATCAGGCCTGCAAACGACGTATTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTg                                                                                                                               >  1:4886713/1‑140 (MQ=255)
       aGCGATTAATAGCCCAACGCAATAATGTCTGATGCGCTGCGCTTATCAGGCCTGCAAACGACGTATTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTg                                                                                                                               >  1:1404821/1‑140 (MQ=255)
        gCGATTAATAGCCCAACGCAATAATGTCTGATGCGCTGCGCTTATCAGGCCTGCAAACGACGTATTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGc                                                                                                                              >  2:791014/1‑140 (MQ=255)
            ttAATAGCCCAACGCAATAATGTCTGATGCGCTGCGCTTATCAGGCCTGCAAACGACGTGTTGATTATGTATGCCGAATAAAGCATTAACGCCGCATTCGGCAGGTTGTATTGCTCAACTTCGCTAAATCTGGTGCtttt                                                                                                                          >  2:1763174/1‑140 (MQ=255)
               aTAGCCCAACGCAATAATGTCTGATGCGCTGCGCTTATCAGGCCTGCAAACGACGTATTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCTGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTca                                                                                                                       >  1:4642794/1‑140 (MQ=255)
                  gCCCAACGCAATAATGTCTGATGCGCTGCGCTTATCAGGCCTGCAAACGACGTATTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTcaaca                                                                                                                    <  2:2793568/140‑1 (MQ=255)
                      aaCGCAATAATGTCTGATGCGCTGCGCTTATCAGGCCTGCAAACGACGTATTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAAcgc                                                                                                                >  1:1017616/1‑140 (MQ=255)
                      aaCGCAATAATGTCTGATGCGCTGCGCTTATCAGGCCTGCAAACGACGTATTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAAcgc                                                                                                                >  2:2696264/1‑140 (MQ=255)
                       acaacataatGTCTGATGCGCTGCGCTTATCAGGCCCGCAAACGACGTATTGATTATGTATGCCGACTAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAAcgcg                                                                                                               <  2:1589734/135‑1 (MQ=255)
                       aCGCAATAATGTCTGATGCGCTGCGCTTATCAGGCCTGCAAACGACGTATTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAAcgcg                                                                                                               <  1:8576/140‑1 (MQ=255)
                       aCGCAATAATGTCTGATGCGCTGCGCTTATCAGGCCTGCAAACGACGTATTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAAcgcg                                                                                                               <  2:2751386/140‑1 (MQ=255)
                       aCGCAATAATGTCTGATGCGCTGCGCTTATCAGGCCTGCAAACGACGTATTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAAcgcg                                                                                                               <  1:2358182/140‑1 (MQ=255)
                        cGCAATAATGTCCGATGCGCTGCGCTTATCAGGCCTGCAAACGACGTATTGATTATGTATGCCGAATAAAGCATTCACGCCGCCTCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAAcgcgc                                                                                                              >  2:5034012/1‑140 (MQ=255)
                            ataatGTCTGATGCGCTGCGCTTATCAGGCCTGCAAACGACGTATTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGaa                                                                                                          <  1:4960416/140‑1 (MQ=255)
                            ataatGTCTGATGCGCTGCGCTTATCAGGCCTGCAAACGACGTATTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGaa                                                                                                          <  2:1466746/140‑1 (MQ=255)
                            ataatGTCTGATGCGCTGCGCTTATCAGGCCTGCAAACGACGTATTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGaa                                                                                                          <  2:1511872/140‑1 (MQ=255)
                             taatGTCTGATGCGCTGCGCTTATCAGGCCTGCAAACGACGTATTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAAc                                                                                                         >  1:659704/1‑140 (MQ=255)
                             taatGTCTGATGCGCTGCGCTTATCAGGCCTGCAAACGACGTATTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAAc                                                                                                         >  1:4735439/1‑140 (MQ=255)
                             taatGTCTGATGCGCTGCGCTTATCAGGCCTGCAAACGACGTATTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAAc                                                                                                         >  2:4207933/1‑140 (MQ=255)
                             taatGTCTGATGCGCTGCGCTTATCAGGCCTGCAAACGACGTATTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAAc                                                                                                         <  1:1728339/140‑1 (MQ=255)
                              aatGTCTGATGCGCTGCGCTTATCAGGCCTGCAAACGACGTATTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACt                                                                                                        <  2:1796052/140‑1 (MQ=255)
                                tGTCTGATGCGCTGCGCTTATCAGGCCTGCAAACGACGTATTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAAc                                                                                                         >  1:1674742/1‑137 (MQ=255)
                                tGTCTGATGCGCTGCGCTTATCAGGCCTGCAAACGACGTATTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACtga                                                                                                      >  2:3717146/1‑140 (MQ=255)
                                tGTCTGATGCGCTGCGCTTATCAGGCCTGCAAACGACGTATTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACtga                                                                                                      >  2:2662592/1‑140 (MQ=255)
                                  tCTGATGCGCTGCGCTTATCAGGCCTGCAAACGACGTATTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACtgatg                                                                                                    >  2:3026634/1‑140 (MQ=255)
                                  tCTGATGCGCTGCGCTTATCAGGCCTGCAAACGACGTATTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACtgatg                                                                                                    <  2:519542/140‑1 (MQ=255)
                                  tCTGATGCGCTGCGCTTATCAGGCCTGCAAACGACGTATTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACtgatg                                                                                                    <  1:373752/140‑1 (MQ=255)
                                  tCTGATGCGCTGCGCTTATCAGGCCTGCAAACGACGTATTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACtgatg                                                                                                    <  1:3493523/140‑1 (MQ=255)
                                  tCTGATGCGCTGCGCTTATCAGGCCTGCAAACGACGTATTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACtgatg                                                                                                    >  2:2300753/1‑140 (MQ=255)
                                  tCTGATGCGCTGCGCTTATCAGGCCTGCAAACGACGTATTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACtgatg                                                                                                    <  1:3088638/140‑1 (MQ=255)
                                   cTGATGCGCTGCGCTTATCAGGCCTGCAAACGACGTATTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACtgatga                                                                                                   <  2:3681287/140‑1 (MQ=255)
                                     gATGCGCTGCGCTTCTCCGGGCTGCAGACGACGTATTGATTATGTGTGCCGGGTAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATTTGGTGCTTTTTCAACAGCGCGCGGAAGTGATGATa                                                                                                 >  2:3920279/1‑140 (MQ=255)
                                     gATGCGCTGCGCTTATCAGGCCTGCAAACGACGTATTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACTGATGATa                                                                                                 >  2:982970/1‑140 (MQ=255)
                                       tgcgctgcgcTTATCAGGCCTGCAAACGACGTATTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAAcgcg                                                                                                               >  1:2972931/1‑124 (MQ=255)
                                       tgcgctgcgcTTATCAGGCCTGCAAACGACGTATTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACTGATGATAAg                                                                                               >  1:1937383/1‑140 (MQ=255)
                                         cgctgcgctTATCAGGCCTGCAAACGCCGTATTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGGATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACTGATGATCAGtt                                                                                             <  2:2346445/140‑1 (MQ=255)
                                         cgctgcgctTATCAGGCCTGCAAACGACGTATTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACTGATGATAAGtt                                                                                             <  1:1236993/140‑1 (MQ=255)
                                         cgcggcgctTATCAGGCCTGCAAACGACGTATTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACTGATGATAAGtt                                                                                             <  2:3659195/140‑1 (MQ=255)
                                           ctgcgctTATCAGGCCTGCAAACGACGTATTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGt                                                                                                                                >  2:1478735/1‑103 (MQ=255)
                                           ctgcgctTATCAGGCCTGCAAACGACGTATTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACTGATGATAAGTTaa                                                                                           >  2:3844347/1‑140 (MQ=255)
                                            tgcgctTATCAGGCCTGCAAACGACGTATTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACTGATGATAAGTTAAc                                                                                          <  1:2771627/140‑1 (MQ=255)
                                            tgcgctTATCAGGCCTGCAAACGACGTATTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACTGATGATAAGTTAAc                                                                                          >  1:4024063/1‑140 (MQ=255)
                                            tgcgctTATCAGGCCTGCAAACGACGTATTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACTGATGATAAGTTAAc                                                                                          <  1:4565118/140‑1 (MQ=255)
                                            tgcgctTATCAGGCCTGCAAACGACGTATTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACTGATGATAAGTTAAc                                                                                          <  1:2323392/140‑1 (MQ=255)
                                            tgcgctTATCAGGCCTGCAAACGACGTATTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCCCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACTGATGATAAGTTAAc                                                                                          <  2:2111612/140‑1 (MQ=255)
                                               gctTATCAGGCCTGCAAACGACGTATTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACTGATGATAATTTAAcccc                                                                                       <  2:1299847/140‑1 (MQ=255)
                                               gctTATCAGGCCTGCAAACGACGTATTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACTGATGATAAGTTAAcccc                                                                                       <  1:1086965/140‑1 (MQ=255)
                                                 ttATCAGGCCTGCAAACGACGTATTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACTGATGATAAGTTAACCCCAg                                                                                     <  1:2647324/140‑1 (MQ=255)
                                                        gCCTGCAAACGACGTATTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACTGATGATAAGTTAACCCCAGTAATTCa                                                                              >  2:3288110/1‑140 (MQ=255)
                                                        gCCTGCAAACGACGTATTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACTGATGATAAGTTAACCCCAGTAATTCa                                                                              >  1:2485597/1‑140 (MQ=255)
                                                        gCCTGCAAACGACGTATTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACTGATGATAAGTTAACCCCAGTAATTCa                                                                              >  1:3274721/1‑140 (MQ=255)
                                                           tGCAAACGACGTATTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACTGATGATAAGTTAACCCCAGTAATTCAGcc                                                                           >  1:1182855/1‑140 (MQ=255)
                                                           tGCAAACGACGTATTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACTGATGATAAGTTAACCCCAGTAATTCAGcc                                                                           >  1:177124/1‑140 (MQ=255)
                                                           tGCAAACGACGTATTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACTGATGATAAGTTAACCCCAGTAATTCAGcc                                                                           >  1:1835204/1‑140 (MQ=255)
                                                             cAAACGACGTATTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACTGATGATAAGTTAACCCCAGTAATTCAGCcgc                                                                         >  1:2199700/1‑140 (MQ=255)
                                                             cAAACGACGTATTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACTGATGATAAGTTAACCCCAGTAATTCAGCcgc                                                                         >  1:2286603/1‑140 (MQ=255)
                                                             cAAACGACGTATTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACTGATGATAAGGTAACCCCAGGAATTCAGCcgc                                                                         >  1:2074356/1‑140 (MQ=255)
                                                             cAAACGACGTATTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCAGAACTGATGATAAGTTAACCCCAGTAATTCAGCcgc                                                                         >  1:2850129/1‑140 (MQ=255)
                                                             cAAACGACGTATTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCGGGTGCTTTTTCAACAACGCGCGGAAGTGATGAAAAGTTAACCCCAGTAATTCAGCcgc                                                                         >  2:3372177/1‑140 (MQ=255)
                                                             cAAACGACGTATTGATTAGGTATGCCGAATAAAACATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCGAAATCTGGTGCTTTTTCAACAACGCGCGGAACTGATGATAATTTAACACCAGTAATTCAGCcgc                                                                         >  2:4986825/1‑140 (MQ=255)
                                                              aaaCGACGTATTTATTATGTATGCCGGATAAAGCCTTGACGCCGTAGCCGGCAAGTTGTATTGCTGAGCTTCGCTAAATCTTGTGCTTGTTCAACAACGCGCGGAACTGATGAGAAGTTAACCCCAGTAATTGAGCcgcg                                                                        <  2:2270100/140‑1 (MQ=255)
                                                              aaaCGACGTATTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACTGATGATAAGTTAACCCCAGTAATTCAGCcgcg                                                                        <  1:1535293/140‑1 (MQ=255)
                                                              aaaCGACGTATTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACTGATGATAAGTTAACCCCAGTAATTCAGCcgcg                                                                        <  2:609334/140‑1 (MQ=255)
                                                              aaaCGACGTAGTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACTGATGATAAGTTAACCCCAGTAATTCAGCcgcg                                                                        <  2:1759174/140‑1 (MQ=255)
                                                                  gacgTATTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACTGATGATAAGTTAACCCCAGTAATTCAGCCGCGCGCt                                                                    <  2:4724565/140‑1 (MQ=255)
                                                                  gacgTATTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACTGATGATAAGTTAACCCCAGTAATTCAGCCGCGCGCt                                                                    >  1:766782/1‑140 (MQ=255)
                                                                    cgTATTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACTGATGATAAGTTAACCCCAGTAATTCAGCCGCGCGCTTc                                                                  <  1:1908852/140‑1 (MQ=255)
                                                                    cgTATTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACTGATGATAAGTTAACCCCAGTAATTCAGCCGCGCGCTTc                                                                  >  1:4321550/1‑140 (MQ=255)
                                                                    cgTATTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACTGATGATAAGTTAACCCCAGTAATTCAGCCGCGCGCTTc                                                                  <  1:4829360/140‑1 (MQ=255)
                                                                       aTTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAGCGCGCGGAACTGGTGATAAGGTAACGCAAGTAATTCAGCCGCGCGCTTCTgg                                                               >  2:1950266/1‑140 (MQ=255)
                                                                       aTTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACTGATGATAAGTTAACCCCAGTAATTCAGCCGCGCGCTTCTgg                                                               >  1:3104195/1‑140 (MQ=255)
                                                                       aTTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACTGATGATAAGTTAACCCCAGTAATTCAGCCGCGCGCTTCTgg                                                               >  2:1884218/1‑140 (MQ=255)
                                                                              atgtatgCCGAATAAAGCATTCACTCAGCATCCGGCATTTTGTATTGCGCAACTTCGCTACATCTGGTGCTTTTTCAACACCGCGCGGAGCTGATGATAAGTTAACCCCAGTAATTCAGCAGCGCGCTTCTGGTTATAtt                                                        >  2:3490836/1‑140 (MQ=255)
                                                                              atgtatgCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACTGATGATAAGTTAACCCCAGTAATTCAGCCGCGCGCTTCTGGTTATAtt                                                        >  2:3767105/1‑140 (MQ=255)
                                                                              atgtatgCCGAATAAAGCATGCACGCCGCATCCGGCAATGTGTATTGCTCAACTTCGCTAAATCTGGTGCTTGTTCAACAACGCGCGGAACTGATGATAAGTTAACCCCAGTAATTCAGCCGCGTGCTTCTGGTTATAtt                                                        >  2:4597845/1‑140 (MQ=255)
                                                                                  atgCCGCATAAAGCATTCACGCCGCATCCGGCACGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACTGATGATAAGTTAACCCCAGTAATTCAGCCGCGCGCTTCTGGTTATCTTTccc                                                    <  1:3870649/140‑1 (MQ=255)
                                                                                  atgCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACTGATGATAAGTTAACCCCAGTAATTCAGCCGCGCGCTTCTGGTTATATTTccc                                                    <  2:2485597/140‑1 (MQ=255)
                                                                                   tgCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACTGATGATAAGTTAACCCCAGTAATTCAGCCGCGCGCTTCTGGTTATATTTCCCt                                                   >  1:3597514/1‑140 (MQ=255)
                                                                                     ccGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACTGATGATAAGTTAACCCCAGTAATTCAGCCGCGCGCTTCTGGTTATATTTCCCttg                                                 >  1:1690127/1‑140 (MQ=255)
                                                                                     ccGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACTGATGATAAGTTAACCCCAGTAATTCAGCCGCGCGCTTCTGGTTATATTTCCCttg                                                 >  2:4298201/1‑140 (MQ=255)
                                                                                         agaaaGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCGTTTTCAACAACGCGCGGAACCGATGATAAGTTAACCCCAGTAATTCAGCCGCGCGCTTCTGGTCATATTTCCCTTTTTGc                                             >  1:4075528/3‑140 (MQ=255)
                                                                                         aTAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACTGATGATAAGTTAACCCCAGTAATTCAGCCGCGCGCTTCTgg                                                               <  2:2978694/122‑1 (MQ=255)
                                                                                         aTAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACTGATGATAAGTTAACCCCAGTAATTCAGCCGCGCGCTTCTGGTTATATTTCCCTTGTTGc                                             >  2:4803084/1‑140 (MQ=255)
                                                                                            aaGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACTGATGATAAGTTAACCCCAGTAATTCAGCCGCGCGCTTCTGGTTATATTTCCCTTGTTGCaaa                                          <  1:722814/140‑1 (MQ=255)
                                                                                                  tCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACTGATGATAAGTTAACCCCAGTAATTCAGCCGCGCGCTTCTGGTTATATTTCCCTTGTTGCAAACTGAGt                                    >  1:3671433/1‑140 (MQ=255)
                                                                                                  tCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACTGATGATAAGTTAACCCCAGTAATTCAGCCGCGCGCTTCTGGTTATATTTCCCTTGTTGCAAACTGAGt                                    >  1:1376294/1‑140 (MQ=255)
                                                                                                  tCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACTGATGATAAGTTAACCCCAGTAATTCAGCCGCGCGCTTCTGGTTATATTTCCCTTGTTGCAAACTGAGt                                    >  1:3412422/1‑140 (MQ=255)
                                                                                                         gcATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACTGATGATAAGTTAACCCCAGTAATTCAGCCGCGCGCTTCTGGTTATATTTCCCTTGTTGCAAACTGAGTTgcagca                             >  2:4082209/1‑140 (MQ=255)
                                                                                                         gcATCCGGCAAGGTGTCTTGCTCAACTTCGCTAGATCTGGTGCTTTTTCAACAACGCGCGGCACTGGTGATAAGTTAACCCCAGTAATTCCGCCGCGCGCCTCTGGTTATATTTCCCTTGTTGCACACTGAGTTgcagca                             <  2:2914612/140‑1 (MQ=255)
                                                                                                          cATCCGGCACGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCCACAACGCGCGGCACTGATGATAAGTTAACCCCAGTAATTCAGCCGCGCGCTTCTGGTTATATTTCCCTTGTTGCAAACTGAGTTGCAGCaa                            >  2:4203612/1‑140 (MQ=255)
                                                                                                            tCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACTGATGATAAGTTAACCCCAGTAATTCAGCCGCGCGCTTCTGGTTATATTTCCCTTGTTGCAAACTGAGTTGCAGCAAct                          >  1:2127253/1‑140 (MQ=255)
                                                                                                                gCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACTGATGATAAGTTAACCCCAGTAATTCAGCCGCGCGCTTCTGGTTATATTTCCCTTGTTGCAAACTGAGTTGCAGCAACTCttt                      >  1:493613/1‑140 (MQ=255)
                                                                                                                    gTTGTATTGCTCAGCTTCGCTAACTCTGGTGCTTTCTCAACAACGCGCGGAACTGATGATAAGTTAACCGCAGTAATTCACCCGCGCGCTTCTGGGTATAGTTCCCTTGTTGGAAACTCAGTTTCCGCCACCCtttggcc                  >  2:3126225/1‑136 (MQ=255)
                                                                                                                          ttGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACTGATGATAAGTTAACCCCAGTAATTCAGCCGCGCGCTTCTGGTTATATTTCCCTTGTTGCAAACTGAGTTGCAGCAACTCTTTTTCCtgctgc            >  1:5053418/1‑140 (MQ=255)
                                                                                                                             cTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACTGATGATAAGTTAACCCCAGTAATTCAGCCGCGCGCTGCTGGTTATATTTCCCTTGTTGCAAACTGAGTTGCAGCAACTCTTTTTCCTGCTGCATc         >  1:4183926/1‑140 (MQ=255)
                                                                                                                             cTCAACTTCGCTAAATCTGGTGCTTTTTAAACAACGCGCGGAACTGATGATACGTTCACCCCAGTAATTCAGCCGCGCGCTTCTGGTTATATTTCCCTTGTTGCAAACTGAGTTGCAGCAACTCTTTTTCCTGCTGCATc         >  2:4368458/1‑140 (MQ=255)
                                                                                                                               cAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACTGATGATAAGTTAACCCCAGTAATTCAGCCGCGCGCTTCTGGTTATATTTCCCTTGTTGCAAACTGAGTTGCAGCAACTCTTTTTCCTGCTGCATCTg       >  1:1585992/1‑140 (MQ=255)
                                                                                                                                  cTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACTGATGATAAGTTAACCCCAGTAATTCAGCCGCGCGCTTCTGGTTATATTTCCCTTGTTGCAAACTGAGTTGCAGCAACTCTTTTTCCTGCTGCATCTGaaa    >  2:4692684/1‑140 (MQ=255)
                                                                                                                                  cTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACTGATGATAAGTTAACCCCAGTAATTCAGCCGCGCGCTTCTGGTTATATTTCCCTTGTTGCAAACTGAGTTGCAGCAACTCTTTTTCCTGCTGCATCTGaaa    >  2:69196/1‑140 (MQ=255)
                                                                                                                                  cTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACTGATGATAAGTTAACCCCAGTAATTCAGCCGCGCGCTTCTGGTTATATTTCCCTTGTTGCAAACTGAGTTGCAGCAACTCTTTTTCCTGCTGCATCTGaaa    >  1:2723349/1‑140 (MQ=255)
                                                                                                                                       |                                                                                                                                        
TGCGCTGAGCGATTAATAGCCCAACGCAATAATGTCTGATGCGCTGCGCTTATCAGGCCTGCAAACGACGTATTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGTTAAATCTGGTGCTTTTTCAACAACGCGCGGAACTGATGATAAGTTAACCCCAGTAATTCAGCCGCGCGCTTCTGGTTATATTTCCCTTGTTGCAAACTGAGTTGCAGCAACTCTTTTTCCTGCTGCATCTGAAACT  >  NZ_CP025268/1371619‑1371890

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: