Predicted mutation
evidence seq id position mutation annotation gene description
RA NZ_CP025268 1,846,713 A→G *136* (TAA→TAG
I80T (ATT→ACT) 
nudG →
ynjH ←
CTP pyrophosphohydrolase
YnjH family protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NZ_CP0252681,846,7130AG99.7% 1104.7 / NA 331*136* (TAA→TAG
I80T (ATT→ACT) 
nudG
ynjH
CTP pyrophosphohydrolase
YnjH family protein
Reads supporting (aligned to +/- strand):  ref base A (0/0);  major base G (136/194);  minor base T (1/0);  total (137/194)
Fisher's exact test for biased strand distribution p-value = 4.14e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 331 total aligned reads displayed.

GACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCCTGCTGACATTCCATTATTAGAGGCGTTTATGGCTTTACGCGCCGCCAGACCAGCGGATTAATGCTAAGGGTTTTGTCATCACGCTGGCATTGCAGCAGTATTCCTTCGGCTTTAATTACCGCCCCTTCAGAATAATTTTGATCCTGATAAACGCAGCACTGAGTACAGGGCTGCGCTGACTGCCCGCCTGAACTGAA  >  NZ_CP025268/1846578‑1846849
                                                                                                                                       |                                                                                                                                        
gACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCCTGCTGACATTCCATTATTAGAGGCGTTTATGGCTTTACGCGCCGCCAGACCAGCGGATTAGTGCt                                                                                                                                      >  2:3489088/1‑140 (MQ=255)
 aCGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCCTGCTGACATTCCATTATTAGAGGCGTTTATGGCTTTACGCGCCGCCAGACCAGCGGATTAGTGCTa                                                                                                                                     <  2:1161169/140‑1 (MQ=255)
 aCGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCCTGCTGACATTCCATTATTAGAGGCGTTTATGGCTTTACGCGCCGCCAGACCAGCGGATTAGTGCTa                                                                                                                                     <  1:4813699/140‑1 (MQ=255)
       cAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCCTGCTGACATTCCATTATTAGAGGCGTTTATGGCTTTACGCGCCGCCAGACCAGCGGATTAGTGCTAAGGGtt                                                                                                                               <  1:2244796/140‑1 (MQ=255)
          gCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCCTGCTGACATTCCATTATTAGAGGCGTTTATGGCTTTACGCGCCGCCAGACCAGCGGATTAGTGCTAAGGGTTTTg                                                                                                                            >  1:558196/1‑140 (MQ=255)
          gCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCCTGCTGACATTCCATTATTAGAGGCGTTTATGGCTTTACGCGCCGCCAGACCAGCGGATTAGTGCTAAGGGTTTTg                                                                                                                            >  1:1829423/1‑140 (MQ=255)
             caTGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCCTGCTGACATTCCATTATTAGAGGCGTTTATGGCTTTACGCGCCGCCAGACCAGCGGATTAGTGCTAAGGGTTTTGtca                                                                                                                         >  1:1237506/1‑140 (MQ=255)
              aTGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCCTGCTGACATTCCATTATTAGAGGCGTTTATGGCTTTACGCGCCGCCAGACCAGCGGATTAGTGCTAAGGGTTTTGtcat                                                                                                                        <  2:1186474/140‑1 (MQ=255)
              aTGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCCTGCTGACATTCCATTATTAGAGGCGTTTATGGCTTTACGCGCCGCCAGACCAGCGGATTAGTGCTAAGGGTTTTGtcat                                                                                                                        <  2:2439472/140‑1 (MQ=255)
              aTGAACATCAGGCGCTGGGCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCCTGCTGACATTCCATTATTAGAGGCGTTTATGGCTTTACGCGCCGCCAGACCAGCGGATTAGTGCTAAGGGTTTTGtcat                                                                                                                        >  1:4940349/1‑140 (MQ=255)
               tGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCTCTGCTGACATTCCATTATTAGAGGCGTGTATGGCTTTACGCGCCGCCAGACCAGCGGATTAGTGCTAAGGGTTTTGtcatt                                                                                                                       >  2:1302949/1‑139 (MQ=255)
               tGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCCTGCTGACATTCCATTATTAGAGGCGTTTATGGCTTTACGCGCCGCCAGACCAGCGGATTAGTGCTAAGGGTTTTGtcatc                                                                                                                       >  1:5067977/1‑140 (MQ=255)
               tGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCCTGCTGACATTCCATTATTAGAGGCGTTTATGGCTTTACGCGCCGCCAGACCAGCGGATTAGTGCTAAGGGTTTTGtcatc                                                                                                                       >  2:3481988/1‑140 (MQ=255)
                gAACATCAGGCTCGGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCCTGCTGACATTCCATTATTAGAGGCGTTTATGGCTTTACGCGCCGCCAGACCAGCGGATTAGTGCTAAGGGTTTTGtcatca                                                                                                                      >  2:3422376/1‑140 (MQ=255)
                      cAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCCTGCTGACATTCCATTATTAGAGGCGTTTATGGCTTTACGCGCCGCCAGACCAGCGGATTAGTGCTAAGGGTTTTGTCATCACGCTgg                                                                                                                <  1:3487777/140‑1 (MQ=255)
                        ggCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCCTGCTGACATTCCATTATTAGAGGCGTTTATGGCTTTACGCGCCGCCAGACCAGCGGATTAGTGCTAAGGGTTTTGTCATCACGCTGGCa                                                                                                              >  1:4185807/1‑140 (MQ=255)
                        ggCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCCTGCTGACATTCCATTATTAGAGGCGTTTATGGCTTTACGCGCCGCCAGACCAGCGGATTAGTGCTAAGGGTTTTGTCATCACGCTGGCa                                                                                                              <  1:2931447/140‑1 (MQ=255)
                         gcgcTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCCTGCTGACATTCCATTATTAGAGGCGTTTATGGCTTTACGCGCCGCCAGACCAGCGGATTAGTGCTAAGGGTTTTGTCATCACGCTGGCAt                                                                                                             <  2:3659526/140‑1 (MQ=255)
                           gcTGGTCTGGTGCTGACCCGGAGACGCGCTGCACTAACCGCTGGCCCCTCCTCGCAAGCGTCTGATGGATGCGTGTGTGGGTTTTCGCGCCGCCAGACCAGCGGATTAGTGCTAAGGGTTTTGTCATCACGCTGGCATTg                                                                                                           <  2:2226584/140‑1 (MQ=255)
                             tggtctggtGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCCTGCTGACATTCCATTATTAGAGGCGTTTATGGCTTTACGCGCCGCCAGACCAGCGGATTAGTGCTAAGGGTTTTGTCATCACGCTGGCATTgca                                                                                                         >  1:3692377/1‑140 (MQ=255)
                              ggtctggtGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCCTGCTGACATTCCATTATTAGAGGCGTTTATGGCTTTACGCGCCGCCAGACCAGCGGATTAGTGCTAAGGGTTTTGTCATCACGCTGGCATTgcag                                                                                                        >  2:2703787/1‑140 (MQ=255)
                              ggtctggtGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCCTGCTGACATTCCATTATTAGAGGCGTTTATGGCTTTACGCGCCGCCAGACCAGCGGATTAGTGCTAAGGGTTTTGTCATCACGCTGGCATTgcag                                                                                                        <  1:3501684/140‑1 (MQ=255)
                              ggtctggtGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCCTGCTGACATTCCATTATTAGAGGCGTTTATGGCTTTACGCGCCGCCAGACCAGCGGATTAGTGCTAAGGGTTTTGTCATCACGCTGGCATTgcag                                                                                                        >  2:4850890/1‑140 (MQ=255)
                              ggtctggtGCTCACCAGAAGAGCCGCTGCAATATCCGCTGGCTCCTGCTGACATTCCATTATTAGAGGCGTTTATGGCTTTACGCGCCACCAGACCAGCGGAGTAGTGCTAAGGGTTTTGTCATCACGCTGGCATTgcag                                                                                                        >  2:869219/1‑140 (MQ=255)
                                   ggtGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCCTGCTGACAGTCCATTATTAGATGCGTTTATGGCTTTACGCGCCGCCAGACCAGCGGATTGGTGCTAAGGGTCTTGTCATCCCGCTGGCATTGCAGCAGTa                                                                                                   >  2:1789376/1‑140 (MQ=255)
                                         cACCTGAAGAGGCGCTGCAATATCCGCTGGCCCCTGCTGACATTCCATTATTAGAGGCGTTTATGGCTTTACGCGCCGCCAGACCAGCGGATTAGTGCTAAGGGTTTTGTCATCACGCTGGCATTGCAGCAGTATTCCtt                                                                                             >  1:2307546/1‑140 (MQ=255)
                                         cACCTGAAGAGGCGCTGCAATATCCGCTGGCCCCTGCTGACATTCCATTATTAGAGGCGTTTATGGCTTTACGCGCCGCCAGACCAGCGGATTAGTGCTAAGGGTTTTGTCATCACGCTGGCATTGCAGCAGTATTCCtt                                                                                             <  1:1610222/140‑1 (MQ=255)
                                          aCCTGAAGAGGCGCTGCAATATCCGCTGGCCCCTGCTGACATTCCATCATTAGAGGCGTTTATGGCTTTACGCGCCGCCAGACCAGCGGATTAGTGCTAAGGGTTTTGTCATCACGCTGGCATTGCAGCAGTATTCCTTc                                                                                            >  2:3994396/1‑140 (MQ=255)
                                            cTGAAGAGGCGCTGCAATATCCGCTGGCCCCTGCTGACATTCCATTATTAGAGGCGTTTATGGCTTTACGCGCCGCCAGACCAGCGGATTAGTGCTAAGGGTTTTGTCATCACGCTGGCATTGCAGCAGTATTCCtt                                                                                             <  2:1397024/137‑1 (MQ=255)
                                                    gcgcTGCAATATCCGCTGGCCCCTGCTGACATTCCATTATTAGAGGCGTTTATGGCTTTACGCGCCGCCAGACCAGCGGATTAGTGCTAAGGGTTTTGTCATCACGCTGGCATTGCAGCAGTATTCCTTCGGCTTTAAtt                                                                                  >  1:239220/1‑140 (MQ=255)
                                                      gcTGCAATATCCGCTGGCCCCTGCTGACATTCCATTATTAGAGGCGTTTATGGCTTTACGCGCCGCCAGACCAGCGGATTAGTGCTAAGGGTTTTGTCATCACGCTGGCATTGCAGCAGTATTCCTTCGGCTTTAATTAc                                                                                >  2:1961518/1‑140 (MQ=255)
                                                      gcTGCAATATCCGCTGGCCCCTGCTGACATTCCATTATTAGAGGCGTTTATGGCTTTACGCGCCGCCAGACCAGCGGATTAGTGCTAAGGGTTTTGTCATCACGCTGGCATTGCAGCAGTATTCCTTCGGCTTTAATTAc                                                                                >  2:2336329/1‑140 (MQ=255)
                                                      gcTGCAATATCCGCTGGCCCCTGCTGACATTCCATTATTAGAGGCGTTTATGGCTTTACGCGCCGCCAGACCAGCGGATTAGTGCTAAGGGTTTTGTCATCACGCTGGCATTGCAGCAGTATTCCTTCGGCTTTAATTAc                                                                                >  1:601213/1‑140 (MQ=255)
                                                        tGCAATAACCGCTGGCCCCTGCTGACATTCCATTATTAGAGGCGTTTATGGCTTCACGCGCCGCCAGACCAGCGGATTAGTGCTAAGGTTTTTGTCCTCCCGCTGGCATTGCAGCAGTATTCCTTCGGCTTTAATTACCg                                                                              <  2:420911/140‑1 (MQ=255)
                                                         gCAATATGCGCTGGCCCCTGCTGACATTGCATGATTAGAGTCGTTTATGGCTTTACGCGCCGCCAGACCAGCGTATTAGAGCTAAGGGTTTTGTCATCACGCTGGCATTGCAGCAGTATTCCTTCGGCTTTAATTACCga                                                                             <  2:4233121/140‑2 (MQ=255)
                                                         gCAATATCCGCTGGCCCCTGCTGACATTCCATTATTAGAGGCGTTTATGGCTTTACGCGCCGCCAGACCAGCGGATTAGTGCTAAGGGTTTTGGCATCACGCTGGCATTGCAGCAGTATTCCTTCGTCTTTAATTACCGc                                                                             >  2:4381282/1‑140 (MQ=255)
                                                              atCCGCTGGCCCCTGCTGACATTCCATTATTAGAGGCGTTTATGGCTTTACGCGCCGCCAGACCAGCGGATTAGTGCTAAGTGTTTTGTCATCACGCTGGCATTGCAGCAGTATTCCTTCGGCTTTAATTACCGCCCCtt                                                                        <  2:403758/140‑1 (MQ=255)
                                                              atCCGCTGGCCCCTGCTGACATTCCATTATTAGAGGCGTTTATGGCTTTACGCGCCGCCAGACCAGCGGATTAGTGCTAAGGGTTTTGTCATCACGCTGGCATTGCAGCAGTATTCCTTCGGCTTTAATTACCGCCCCtt                                                                        >  1:4002613/1‑140 (MQ=255)
                                                              atCCGCTGGCCCCTGCTGACATTCCATTATTAGAGGCGTTTATGGCTTTACGCGCCGCCAGACCAGCGGATTAGTGCTAAGGGTTTTGTCATCACGCTGGCATTGCAGCAGTATTCCTTCGGCTTTAATTACCGCCCCtt                                                                        >  1:1469746/1‑140 (MQ=255)
                                                               tCCGCTGGCCCCTGCTGACATTCCATTATTAGAGGCGTTTATGGCTTTACGCGCCGCCAGACCAGCGGATTAGTGCTAAGGGTTTTGTCATCACGCTGGCATTGCAGCAGTATTCCTTCGGCTTTAATTACCGCCCCTTc                                                                       >  1:810319/1‑140 (MQ=255)
                                                                  gCTGGCCCCTGCTGACATTCCATTATTAGAGGCGTTTATGGCTTTACGCGCCGCCAGACCAGCGGATTAGTGCTAAGGGTTTTGTCATCACGCTGGCATTGCAGCAGTATTCCTTCGGCTTTAATTACCGCCCCTTCAGa                                                                    >  1:900167/1‑140 (MQ=255)
                                                                   cTGGCCCCTGCTGACATTCCATTATTAGAGGCGTTTATGGCTGTACGCGCCGCCAGACCAGCGGATTAGTGCTAAGGGTTTTGTCATCACGCTGGCATTGCAGCAGTATTCCTTCGGCTTTAATTACTGCCCCTTCAGaa                                                                   <  2:5041844/140‑1 (MQ=255)
                                                                    tGGCCCCTGCTGACATTCCATTATTAGAGGCGTTTATGGCTTTACGCGCCGCCAGACCAGCGGATTAGTGCTAAGGGTTTTGTCATCACGCTGGCATTGCAGCAGTATTCCTTCGGCTTTAATTACCGCCCCTTCAGaat                                                                  <  1:3962037/140‑1 (MQ=255)
                                                                         ccTGCTGACATTCCATTATTAGAGGCGTTTATGGCTTTACGCGCCGCCAGACCAGCGGATTAGTGCTAAGGGTTTTGTCATCACGCTGGCATTGCAGCAGTATTCCTTCGGCTTTAATTACCGCCCCTTCAGAATAAttt                                                             <  1:4481275/140‑1 (MQ=255)
                                                                         ccTGCTGACATTCCATTATTAGAGGCGTTTATGGCTTTACGCGCCGCCAGACCAGCGGATTAGTGCTAAGGGTTTTGTCATCACGCTGGCATTGCAGCAGTATTCCTTCGGCTTTAATTACCGCCCCTTCAGAATAAttt                                                             >  2:235048/1‑140 (MQ=255)
                                                                           tgctgACATTCCATTATTAGAGGCGTTTATGGCTTTACGCGCCGCCATACCAGCGGATTAGTGCTAAGGGTTTTGTCATCACGCTGGCAGTGCAGCAGTATTCCTTCGGCTGTAATTACCGCCCCTTCAGAATAAtgttt                                                           >  2:1104237/1‑139 (MQ=255)
                                                                           tgctgACATTCCATTATTAGAGGCGTTTATGGCTTTACGCGCCGCCAGACCAGCGGATTAGTGCTAAGGGTTTTGTCATCACGCTGGCATTGCAGCAGTATTCCTTCGGCTTTAATTACCGCCCCTTCAGAATAATTTTg                                                           >  2:831380/1‑140 (MQ=255)
                                                                            gctgACATTCCATTATTAGAGGCGTTTATGGCTTTACGCGCCGCCAGACCAGCGGATTAGTGCTAAGGGTTTTGTCATCACGCTGGCATTGCAGCAGTACTCCTTCGGCTTTAATTACCGCCCCTTCAGAATAATTTTGa                                                          >  1:4683013/1‑140 (MQ=255)
                                                                              tgACATTCCATTATTAGAGGCGTTTATGGCTTTACGCGCCGCCAGACCAGCGGATTAGTGCTAAGGGTTTTGTCATCACGCTGGCATTGCAGCAGTATTCCTTCGGCTTTAATTACCGCCCCTTCAGAATAATTTTGacc                                                        <  2:1469746/140‑3 (MQ=255)
                                                                              gggcATTCCAGTATTAGATCCGTTTATGGCCCTATGCGCCGCCAGCCAGGCGGATTAGTGCCAAGGGTTTTGTGATCACGCTGGCATTGCAGCAGTATTCCTTCGGCTTTAATTACCGCCCCTTCAGAATAATTTTGATc                                                        <  2:2081871/137‑1 (MQ=255)
                                                                                  aTTCCAGTATTAGAGGCGTTTATGGCTTAACGCGCCGCCAGACCAGCGCATTATTGCTAAGGGTTTTGTCATCACGCTGGCATTGCAGAAGTATTCCTTCGGCTTTAATTACCGCTCCTTCGGAATAATTTAGGTTCTGa                                                    >  2:3787393/1‑140 (MQ=255)
                                                                                   ttCCATTATTAGAGGCGTTTATGGCTTTACGCGCCGCCAGACCAGCGGATTAGTGCTAAGGGTTTTGTCATCACGCTGGCATTGCAGCAGTATTCCTTCGGCTTTAATTACCGCCCCTTCAGAATAATTTTGATCCTGAt                                                   <  1:1040501/140‑1 (MQ=255)
                                                                                   ttCCATTATTAGAGGCGTTTATGGCTTTACGCGCCGCCAGACCAGCGGATTAGTGCTAAGGGTTTTGTCATCACGCTGGCATTGCAGCAGTATTCCTTCGGCTTTAATTACCGCCCCTTCAGAATAATTTTGATCCTGAt                                                   <  2:2484140/140‑1 (MQ=255)
                                                                                     ccATTATTAGAGGCGTTTATGGCTTTACGCGCCGCCAGACCAGCGGATTAGTGCTAAGGGTTTTGTCATCACGCTGGCATTGCAGCAGTATTTCTTCGGCTTTAATTACCGCCCCTTCAGAATAATTTTGATCCTGATaa                                                 >  1:4306353/1‑140 (MQ=255)
                                                                                        ttattaGAGGCGTTTATGGCTTTACGCGCCGCCAGACCAGCGGATTAGTGCTAAGGGTTTTGTCATCACGCTGGCATTGCAGCAGTATTCCTTCGGCTTTAATTACCGCCCCTTCAGAATAATTTTGATCCTGATAAACg                                              <  2:3254925/140‑1 (MQ=255)
                                                                                        ttattaGAGGCGTTTATGGCTTTACGCGCCGCCAGACCAGCGGATTAGTGCTAAGGGTTTTGTCATCACGCTGGCATTGCAGCAGTATTCCTTCGGCTTTAATTACCGCCCCTTCAGAATAATTTTGATCCTGATAAACg                                              <  1:741616/140‑1 (MQ=255)
                                                                                        ttattaGAGGCGTTTATGGCTTTACGCGCCGCCAGACCAGCGGATTAGTGCTAAGGGTTGTGTCATCACGCTGGGATTGCAGCAGTATTCCTTCGGCTTTAATTACCGCCCCTTCAGAATAATTTTGATCCTGATAAACg                                              <  2:4763396/140‑1 (MQ=255)
                                                                                          attaGAGGCGTTTATGTCTTTACGCGCCGCCAGACCAGCGGATTAGTGCTAAGGGTTTTGTCATCACGCTGGCATTGCAGCAGTATTCCTTCGGCTTTAATTACCGCCCCTTCAGAATAATTTTGATCCTGATAAACgca                                            <  1:2843188/140‑1 (MQ=255)
                                                                                          attaGAGGCGTTTATGGCTTTACGCGCCGCCAGACCAGCGGATTAGTGCTAAGGGTTTTGTCATCACGCTGGCATTGCAGCAGTATTCCTTCGGCTTTAATTACCGCGCCTTCAGAATAATTTGGATTCTGATAAACgca                                            >  2:4540870/1‑140 (MQ=255)
                                                                                          attaGAGGCGTTTATGGCTTTACGCGCCGCCAGACCAGCGGATTAGTGCTAAGGGTTTTGTCATCACGCTGGCATTGCAGCAGTATTCCTTCGGCTTTAATTACCGCCCCTTCAGAATAATTTTGATCCTGAGAAACgca                                            <  2:1276058/140‑1 (MQ=255)
                                                                                          attaGAGGCGTTTATGGCTTTACGCGCCGCCAGACCAGCAGATTAGTGCTAAGGGTTTTGTCATCACGCTGGCATTGCAGCAGTATTCCTTCGGCTTTAATTACCGCCCCTTCAGACTAATTTTGATCCTGATAAACgca                                            <  2:1371666/140‑1 (MQ=255)
                                                                                             agatGCGTTTATGGCTTTACGCCCCGCCAGACCCGCGGATTAGTGCTAAGGGTTTTGTCATCACGCTGGCATAGCAGCAGTATTCCTTCGGCCTTCATTACCGCCCCTTCAGAATAATTTTGATCCTGATAAACgcagca                                         <  2:2629390/140‑1 (MQ=255)
                                                                                             agagGCGTTTATGGCTTTACGCGCCGCCAGACCTGCGGATTAGTGCTAAGGGTTTTGTCATCACGCTGGCATTGCAGCAGTATTCCTTCGGCATTAATTACCGCCCCTTCAGAATAATTTTGATCCTGATAAACgcagca                                         <  2:2812279/140‑1 (MQ=255)
                                                                                             agagGCGTTTATGGCTTTACGCGCCGCCAGACCAGCGGATTAGTGCTAAGGGTTTTGTCATCACGCTGGCATTGCAGCAGTATTCCTTCGGCTTTAATTACCGCCCCTTCAGAATAATTTTGATCCTGATAAACgcagca                                         <  2:3306099/140‑1 (MQ=255)
                                                                                             agagGCGTTTATGGCTTTACGCGCCGCCAGACCAGCGGATTAGTGCTAAGGGTTTTGTCATCACGCTGGCATTGCAGCAGTATTCCTTCGGCTTTAATTACCGCCCCTTCAGAATAATTTTGATCCTGATAAACgcagca                                         <  2:3813966/140‑1 (MQ=255)
                                                                                             agagGCGTTTATGGCTTTACGCGCCGCCAGACCAGCGGATTAGTGCTAAGGGTTTTGTCATCACGCTGGCATTGCAGCAGTATTCCTTCGGCTTTAATTACCGCCCCTTCAGAATAATTTTGATCCTGATAAACgcagca                                         <  1:3272801/140‑1 (MQ=255)
                                                                                             agagGCGTTTATGGCGTTACGCGCAGCCAGACCAGCGGATTAGTGCTAAGGGTTTTGTCATCACGCTGGCATTGCAGCAGTATTCCTTCGGCTTTAATTACCGCCCCTTCAGAATAATTTTGATCCTGATAAACgcagca                                         <  2:4938667/140‑1 (MQ=255)
                                                                                              gagGCGTTTATGGCTTTACGCGCCGCCAGACCAGCGGATTAGTGCTa                                                                                                                                     <  2:274331/47‑1 (MQ=255)
                                                                                              gagGCGTTTATGGCTTTACGCGCCGCCAGACCAGCGGATTAGTGCTa                                                                                                                                     >  1:274331/1‑47 (MQ=255)
                                                                                               agGCGTTTCTGGCTTTACGCGCCGCCAGACCAGCGGATTAGTGCTAAGGGTTTTGTCATCACGCTGGCATTGCAGCAGTATTCCTTCGGCTTTAATTACCGCCCCTTCAGAATAATTTTGATCCTGATAAACGCAGCACt                                       <  2:2955440/140‑1 (MQ=255)
                                                                                               agGCGTTTATGGCTTTACGCGCCGCCAGACCAGCGGATTAGTGCTAAGGGTTTTGTCATCACGCTGGCATTGCAGCAGTATTCCTTCGGCTTTAATTACCGCCCCTTCAGAATAATTTTGATCCTGATAAACGCAGCACt                                       <  1:1698906/140‑1 (MQ=255)
                                                                                               agGCGTTTATGGCTTTACGCGCCGCCAGACCAGCGGATTAGTGCTAAGGGTTTTGTCATCACGCTGGCATTGCAGCAGTATTCCTTCGGCTTTAATTACCGCCCCTTCAGAATAATTTTGATCCTGATAAACGCAGCACt                                       <  1:2988389/140‑1 (MQ=255)
                                                                                               agGCGTTTATGGCTTTACGCGCCGCCAGACCAGCGGATTAGTGCTAAGGGTTTTGTCATCACGCTGGCATTGCAGCAGTATTCCTTCGGCTTTAATTACCGCCCCTTCAGAATAATTTTGATCCTGATAAACGCAGCACt                                       <  1:3910119/140‑1 (MQ=255)
                                                                                               agGCGTTTATGGCTTTACGCGCCGCCAGACCAGCGGATTAGTGCTAAGGGTTTTGTCATCACGCTGGCATTGCAGCAGTATTCCTTCGGCTTTAATTACCGCCCCTTCAGAATAATTTTGATCCTGATAAACGCAGCACt                                       <  1:2255695/140‑1 (MQ=255)
                                                                                               agGCGTTTATGGCTTTACGCGCCGCCAGACCAGCGGATTAGTGCTAAGGGTTTTGTCATCACGCTGGCATTGCAGCAGTATTCCTTCGGCTTTAATTACCGCCCCTTCAGAATAATTTTGATCCTGATAAACGCAGCACt                                       <  1:701562/140‑1 (MQ=255)
                                                                                               agGCGTTTATGGCTTTACGCGCCGCCAGACCAGCGGATTAGTGCTAAGGGTTTTGTCATCACGCTGGCATTGCAGCAGTATTCCTTCGGCTTTAATTACCGCCCCTTCAGAATAATTTTGATCCTGATAAACGCAGCACt                                       <  2:3935655/140‑1 (MQ=255)
                                                                                               agGCGTTTATGGCTTTACGCGCCGCCAGACCAGCGGATTAGTGCTAAGGGTTTTGTCATCACGCTGGCATTGCAGCAGTATTCCTTCGGCTTTAATTACCGCCCCTTCAGAATAATTTTGATCCTGATAAACGCAGCACt                                       <  1:867920/140‑1 (MQ=255)
                                                                                               agGCGTTTATGGCTTTACGCGCCGCCAGACCAGCGGATTAGTGCTAAGGGTTTTGTCATCACGCTGGCATTGCAGCAGTATTCCTTCGGCTTTAATTACCGCCCCTTCAGAATAATTTTGATCCTGATAAACGCAGCACt                                       <  1:978749/140‑1 (MQ=255)
                                                                                               agGCGTTTATGGCTTTACGCGCCGCCAGACCAGCGGATTAGTGCTAAGGGTTTTGTCATCACGCTGGCATTGCAGCAGTATTCCTTCGGCTTTAATTACCGCCCCTTCAGAATAATTTTGATCCTGATAAACGCAGCACt                                       <  1:2003344/140‑1 (MQ=255)
                                                                                               agGCGTTTATGGCTTTACGCGCCGCCAGACCAGCGGATTAGTGCTAAGGGTTTTGTCATCACGCTGGCATTGCAGCAGTATTCCTTCGGCTTTAATTACCGCCCCTTCAGAATAATTTTGATCCTGATAAACGCAGCACt                                       <  1:1277005/140‑1 (MQ=255)
                                                                                               agGCGTTTATGGCTTTACGCGCCGCCAGACCAGCGGATTAGTGCTAAGGGTTTTGTCATCACGCTGGCATTGCAGCAGTATTCCTTCGGCTTTAATTACCGCCCCTTCAGAATAATTTTGATCCTGATAAACGCAGCACt                                       <  1:1372968/140‑1 (MQ=255)
                                                                                               agGCGTTTATGGCTTTACGCGCCGCCAGACCAGCGGATTAGTGCTAAGGGTTTTGTCATCACGCTGGCATTGCAGCAGTATTCCTTCGGCTTTAATTACCGCCCCTTCAGAATAATTTTGATCCTGATAAACGCAGCACt                                       <  1:2107041/140‑1 (MQ=255)
                                                                                               agGCGTTTATGGCTTTACGCGCCGCCAGACCAGCGGATTAGTGCTAAGGGTTTTGTCATCACGCTGGCATTGCAGCAGTATTCCTTCGGCTTTAATGACCGCCCCTTCATAATAATTTTGATCCTGATAAACGCAGCACt                                       <  2:4667074/140‑1 (MQ=255)
                                                                                               agGCGTTTATGGCTTTACGCGCAGCCAGACCAGCGGATTAGTGCTAAGGGTTTTGTCATCACGCTGGCATTGCAGCAGTATTCCTTCGGCTTTAATTACCGCCCCTTCAGAATAATTTTGATCTTGATAAACGCAGCACt                                       <  2:3568392/140‑1 (MQ=255)
                                                                                               agGCGGTTATGGCTTTACGCGCCCCCAGACCAGCGGATTAGTGCTAAGGGTTTTGTCATCACGCTGGCATTGCAGCAGTATTCCTTCGGCTTTAATTACCGCCCCTTCAGAATAATTTTGATCCTGATAAACGCAGCACt                                       <  1:4904025/140‑1 (MQ=255)
                                                                                                ggCGTTTATGGCTTTACGCGCCGCCAGACCAGCGGATTAGTGCTAAGGGTTTTGTCATCACGCTGGCATTGCAGCAGTATTCCTTCGGCTTTAATTACCGCCCCTTCAGAATAATTTTGATCCTGATAAACGCAGCACTg                                      >  2:5099994/1‑140 (MQ=255)
                                                                                                ggCGTTTATGGCTTTACGCGCCGCCAGACCAGCGGATTAGTGCTAAGGGTTTTGTCATCACGCTGGCATTGCAGCAGTATTCCTTCGGCTTTAATTACCGCCCCTTCAGAATAATTTTGATCCTGATAAACGCAGCACTg                                      >  2:1641114/1‑140 (MQ=255)
                                                                                                  cGTTTATGGCTTTACGCGCCGCCAGACCAGCGGATTAGTGCTAAGGGTTTTGTCATCACGCTGGCATTGCAGCAGTATTCCTTCGGCTTTAATTACCGCCCCTTCAGAATAATTTTGATCCTGATAAACGCAGCACTGAg                                    >  1:3394334/1‑140 (MQ=255)
                                                                                                  cGTTTATGGCTTTACGCGCCGCCAGACCAGCGGATTAGTGCTAAGGGTTTTGTAATCACGCTCGCATTGCAGCAGTATTCCTTCGGCTTTAATTACCGCCCCTTCAGAATAATTTTGATCCTGATAAACGCAGGACTGAg                                    >  2:3046291/1‑140 (MQ=255)
                                                                                                     ttATGGCTTTACGCGCCGCCAGACCAGCGGATTAGTGCTAAGGGTTTTGTCATCACGCTGGCATTGCAGCAGTATTCCTTCGGCTTTAATTACCGCCCCTTCAGAATAATTTTGATCCTGATAAACGCAGCACTGAGTAc                                 >  1:1124893/1‑140 (MQ=255)
                                                                                                      tATGGCTTTACGCGCCGCCAGACCAGCGGATTAGTGCTAAGGGTTTTGTCATCACGCTGGCATTGCAGCAGTATTCCTTCGGCTTTAATTACCGCCCCTTCAGAATAATTTTGATCCTGATAAACGCAGCACTGAGTACa                                <  1:2154950/140‑1 (MQ=255)
                                                                                                        tGGCTTTACGCGCCGCCAGACCAGCGGATTAGTGCTAAGGGTTTTGTCATCACGCTGGCATTGCAGCAGTATTCCTTCGGCTTTAATTACCGCCCCTTCAGAATAATTTTGATCCTGATAAACGCAGCACTGAGTACAgg                              <  1:2678935/140‑1 (MQ=255)
                                                                                                         ggCTTTACGCGCCGCCAGACCAGCGGATTAGTGCTAAGGGTTTTGTCATCACGCTGGCATTGCAGCAGTATTCCTTCGGCTTTAATTACCGCCCCTTCAGAATAATTTTGATCCTGATAAACGCAGCACTGAGTACAggg                             <  1:2037633/140‑1 (MQ=255)
                                                                                                              tACGCGCCGCCAGACCAGCGGATTAGTGCTAAGGGTTTTGTCATCACGCTGGCATTGCAGCAGTATTCCTTCGGCTTTAATTACCGCCCCTTCAGAATAATTTTGATCCTGATAAACGCAGCACTGAGTACAGGGCTgcg                        >  1:2444893/1‑140 (MQ=255)
                                                                                                                     cgccCGACCAGCGGATTAGTGATAAGGGTTTTGTCATCACGCTGGCATTGCAGCAGTATTCCTTCGGCTTTAACTCCCGCCCCTGCAGAATAATTCTGATCCTGATAAACGCAGCACTGAGTACAAGGCGGCGCTGACTg                 <  2:3136145/140‑1 (MQ=255)
                                                                                                                     cgccAGACCAGCGGATTAGTGCTAAGGGTTTTGTCATCACGCTGGCATTGCAGCAGTATTCCTTCGGCTTTAATTACCGCCCCTTCAGAATAATTTTGATCCTGATAAACGCAGCACTGAGTACAGGGCTGCGCTGACTg                 <  2:660945/140‑1 (MQ=255)
                                                                                                                     cgccAGACCAGCGGATTAGTGCTAAGGGTTTTGTCATCACGCTGGCATTGCAGCAGTATTCCTTCGGCTTTAAGTACCGCCCCTTCAGAATAATTTTGATCCTGATAAACGCAGCACTGAGTACAGGGCTGCGCTGACTg                 >  2:726382/1‑140 (MQ=255)
                                                                                                                       ccAGACCAGCGGATTAGTGCTAAGGGTTTTGTCATCACGCTGGCATTGCAGCAGTATTCCTTCGGCTTTAATTACCGCCCCTTCAGAATAATTTTGATCCTGATAAACGCAGCACTGAGTACAGGGCTGCGCTGACTGcc               <  1:1005011/140‑1 (MQ=255)
                                                                                                                               gCGGATTAGTGCTAAGGGTTTTGTCATCACGCTGGCATTGCAGCAGTATTCCTTCGGCTTTAATTACCGCCCCTTCAGAATAATTTTGATCCTGATAAACGCAGCACTGAGTACAGGGCTGCGCTGACTGCCCGCctgaa       >  2:353911/1‑140 (MQ=255)
                                                                                                                               gCGGATTAGTGCTAAGGGTTTTGTCATCACGCTGGCATTGCAGCAGTATTCCTTCGGCTTTAATTACCGCCCCTTCAGAATAATTTTGATCCTGATAAACGCAGCACTGAGTACAGGGCTGCGCTGACTGCCCGCctgaa       <  1:1647232/140‑1 (MQ=255)
                                                                                                                                       |                                                                                                                                        
GACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCCTGCTGACATTCCATTATTAGAGGCGTTTATGGCTTTACGCGCCGCCAGACCAGCGGATTAATGCTAAGGGTTTTGTCATCACGCTGGCATTGCAGCAGTATTCCTTCGGCTTTAATTACCGCCCCTTCAGAATAATTTTGATCCTGATAAACGCAGCACTGAGTACAGGGCTGCGCTGACTGCCCGCCTGAACTGAA  >  NZ_CP025268/1846578‑1846849

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: