Predicted mutation
evidence seq id position mutation annotation gene description
RA NZ_CP025268 1,867,819 C→T R78R (CGC→CGT gapA → glyceraldehyde‑3‑phosphate dehydrogenase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NZ_CP0252681,867,8190CT99.7% 1215.9 / NA 326R78R (CGC→CGTgapAglyceraldehyde‑3‑phosphate dehydrogenase
Reads supporting (aligned to +/- strand):  ref base C (0/1);  new base T (168/155);  total (169/157)
Fisher's exact test for biased strand distribution p-value = 4.81e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 326 total aligned reads displayed.

CCTGTTAGACGCTGATTACATGGCATACATGCTGAAATATGACTCCACTCACGGCCGTTTCGACGGTACCGTTGAAGTGAAAGACGGTCATCTGATCGTTAACGGTAAAAAAATCCGTGTTACCGCTGAACGCGATCCGGCTAACCTGAAATGGGACGAAGTTGGTGTTGACGTTGTCGCTGAAGCAACTGGTCTGTTCCTGACTGACGAAACTGCTCGTAAACACATCACCGCTGGTGCGAAGAAAGTGGTTATGACTGGTCCGTCTA  >  NZ_CP025268/1867687‑1867955
                                                                                                                                    |                                                                                                                                        
ccTGTTAGACGCTGATTACATGGCATACATGCTGAAATATGACTCCACTCACGGCCGTTTCGACGGTACCGTTGAAGTGAAAGACGGCCATCTGATCGTTAACGGTAAAAAAATCCGTGTTACCGCTGAACGTGATCCgg                                                                                                                                   <  1:1000234/140‑1 (MQ=255)
   gTTATACGCTGATTACATGGCATACATGCTTAAATATGACTTCACTCACGGCCGTTTCGTCGGTACCGTTGAAGTGAAAGACGGTCATCTGATCGTTAACGGTATAAAAATCCGTGTTATCGCTGAACGTGATCCGGCTa                                                                                                                                >  2:2151214/1‑140 (MQ=255)
   gTTAGACGCTGATTACATGGCATACATGCTGAAATATGACTCCACTCACGGCCGTTTCGACGGTACCGTTGAAGTGAAAGACGGTCATCTGATCGTTAACGGTAAAAAAATCCGTGTTACCGCTGAACGTGATCCGGCTa                                                                                                                                >  2:4277091/1‑140 (MQ=255)
           ttcaTTACATGGCACAAATGCTGAAATATGACTCCACTCAACACAATTCCGACGGTACCGATGAAGTAAAAGACGGTCATCTGATCGTCACCGGTAAAAAAATCCGTGTTACCGCTGAACGTGACCCGGCTAACCTGaaa                                                                                                                        <  2:1606835/137‑1 (MQ=255)
           cggATTACATGGCATGCATGCTGGAATATGACTCCACTCACGGCCGTTTCGACGGTATCGTTGAAGGGAGAGACGGTCGTCTGGTCGTGAACGGTGAAAGAAGGCGTGTTACCGCTGAACGTGATCCGGCTAACCTGaaa                                                                                                                        >  2:4356813/3‑140 (MQ=255)
           cTGATTACATGGCATACATGCTGAAATATGACTCCACTCACGGCCGTTTCGACGGTACCGTTGAAGTGAAAGACGGTCATCTGATCGTTAACGGTAAAAAAATCCGTGTTACCGCTGAACGTGATCCGGCTAACCTGaaa                                                                                                                        >  2:2115413/1‑140 (MQ=255)
           cTGATTACATGGCATACATGCTGAAATATGACTCCACTCACGGCCGTTTCGACGGTACCGTTGAAGTGAAAGACGGTCATCTGATCGTTAACGGTAAAAAAATCCGTGTTACCGCTGAACGTGATCCGGCTAACCTGaaa                                                                                                                        >  2:4340483/1‑140 (MQ=255)
            tGATTACATGGCATACATGCTGAAATATGACTCCACTCACGGCCGTTTCGACGGTACCGTTGAAGTGAAAGACGGTCATCTGATCGTTAACGGTAAAAAAATCCGTGTTACCGCTGAACGTGATCCGGCTAACCTGAAAt                                                                                                                       >  1:4913143/1‑140 (MQ=255)
              aTTACATGGCATACATGCTGAAATATGACTCCACTCACGGCCGTTTCGACGGTACCGTTGAAGTGAAAGACGGTCATCTGATCGTTAACGGTAAAAAAATCCGTGTTACCGCTGAACGTGATCCGGCTAACCTGAAATgg                                                                                                                     >  1:306368/1‑140 (MQ=255)
              aTTACATGGCATACATGCTGAAATATGACTCCACTCACGGCCGTTTCGACGGTACCGTTGAAGTGAAAGACGGTCATCTGATCGTTAACGGTAAAAAAATCCGTGTTACCGCTGAACGTGATCCGGCTAACCTGAAATgg                                                                                                                     >  1:2898541/1‑140 (MQ=255)
              aTTACATGGCATACATGCTGAAATATGACTCCACTCACGGCCGTTTCGACGGTACCGTTGAAGTGAAAGACGGTCATCTGATCGTTAACGGTAAAAAAATCCGTGTTACCGCTGAACGTGATCCGGCTAACCTGAAATgg                                                                                                                     >  1:416505/1‑140 (MQ=255)
              aTTACATGGCATACATGCTGAAATATGACTCCACTCACGGCCGTTTCGACGGTACCGTTGAAGTGAAAGACGGTCATCTGATCGTTAACGGTAAAAAAATCCGTGTTACCGCTGAACGTGATCCGGCTAACCTGAAATgg                                                                                                                     >  2:2366111/1‑140 (MQ=255)
              aTTACATGGCATACATGCTGAAATATGACTCCACTCACGGCCGTTTCGACGGTACCGTGGAACTGCAACACGGTCACCTGAGCGCTACCGGCAAAAAACTCCGTGTCACCGCTGAACGTGATCCGCCTCACCTGAAATgg                                                                                                                     >  2:3434321/1‑140 (MQ=255)
                tACATGGCATACATGCTGAAATATGACTCCACTCACGGCCGTTTCGACGGTACCGTTGAAGTGAAAGACGGTCATCTGATCGTTAACGGTAAAAAAATCCGTGTTACCGCTGAACGTGATCCGGCTAACCTGAAATGGGa                                                                                                                   <  2:4725138/140‑1 (MQ=255)
                   aTGGCATACATGCTGAAATATGACTCCACTCACGGCCGTTTCGACGGTACCGTTGAAGTGAAAGACGGTCATCTGATCGTTAACGGTAAAAAAATCCGTGTTACCGCTGAACGTGATCCGGCTAACCTGAAATGGGACGa                                                                                                                >  1:1274978/1‑140 (MQ=255)
                      gCATACATGCTGAAATATGACTCCACTCACGGCCGTTTCGACGGTACCGTTGAAGTGAAAGACGGTCATCTGATCGTTAACGGTAAAAAAATCCGTGTTACCGCTGAACGTGATCCGGCTAACCTGAAATGGGACGAAGt                                                                                                             <  2:2314241/140‑1 (MQ=255)
                        aTACATGCTGAAATATGACTCCACTCACGGCCGTTTCGACGGTACCGTTGAAGTGAAAGACGGTCATCTGATCGTTAACGGTAAAAAAATCCGTGTTACCGCTGAACGTGATCCGGCTAACCTGAAATGGGACGAAGTTg                                                                                                           >  1:1392744/1‑140 (MQ=255)
                        aTACATGCTGAAATATGACTCCACTCACGGCCGTTTCGACGGTACCGTTGAAGTGAAAGACGGTCATCTGATCGTTAACGGTAAAAAAATCCGTGTTACCGCTGAACGTGATCCGGCTAACCTGAAATGGGACGAAGTTg                                                                                                           >  2:2295665/1‑140 (MQ=255)
                          aCATGCTGAAATATGACTCCACTCACGGCCGTTTCGACGGTACCGTTGAAGTGAAAGACGGTCATCTGATCGTTAACGGTAAAAAAATCCGTGTTACCGCTGAACGTGATCCGGCTAACCTGAAATGGGACGAAGTTGgt                                                                                                         >  1:882645/1‑140 (MQ=255)
                          aCATGCTGAAAGATGACTCCACTCACGGCCGTTTCGACGGTACCGTTGAAGTGAAAGACGGTCATCTGATCGTTAACGGGATAAAAATCCGTGATACCGCTGAACGTGATCCGGCTAACCTGAAATGGGACGAAGTTGgt                                                                                                         >  1:4227282/1‑140 (MQ=255)
                              gCTGAAATATGACTCCACTCACGGGCGTTTCGACGGTACCGTTGAAGTGAAAGACGATCGACTGATCGTTAACGGTAACAAAATCCGTGTTACCGCTAAACGTGGTTCGGCTAAGCTGAAAAGGGACGAAGttgttgttg                                                                                                     >  2:894184/1‑140 (MQ=255)
                              gCTGAAATATGACTCCACTCACGGCCGTTTCGACGGTACCGTTGAAGTGAAAGACGGTCATCTGATCGTTAACGGTAAAAAAATCCGTGTTACCGCTGAACGTGATCCGGCTAACCTGAAATGGGa                                                                                                                   <  2:3329976/126‑1 (MQ=255)
                               cTGAAATATGACTCCACTCACGGCCGTTTCGACGGTACCGTTGAAGTGAAAGACGGTCATCTGATCGTTAACGGTAAAAAAATCCGTGTTACCGCTGAACGTGATCCGGCTAACCTGAAATGGGACGAAGTTGGTGTTGa                                                                                                    >  1:2313087/1‑140 (MQ=255)
                                tGAAATATGACTCCACTCACGGCCGTTTCGACGGTACCGTTGAAGTGAAAGACGGTCATCTGATCGTTAACGGTAAAAAAATCCGTGTTACCGCTGAACGTGATCCGGCTAACCTGAAATGGGACGCAGATGGTGTTGAc                                                                                                   >  2:1849741/1‑140 (MQ=255)
                                tGAAATATGACTCCACTCACGGCCGTTTCGACGGTACCGTTGAAGTGAAAGACGGTCATCTGATCGTTAACGGTAAAAAAATCCGTGTTACCGCTGAACGTGATCCGGCTAACCTGAAATGGGACGAAGTTGGTGTTGAc                                                                                                   >  1:2726055/1‑140 (MQ=255)
                                     tatGACTCCACTCACGGCCGTTTCGACGGTACCGTTGAAGTGAAAGACGGTCATCTGATCGTTAACGGTAAAAAAATCCGTGTTACCGCTGAACGTGATCCGGCTAACCTGAAATGGGACGAAGTTGGTGTTGACGTTGt                                                                                              >  1:2095270/1‑140 (MQ=255)
                                           tCCACTCACGGCCGTTTCGACGGTACCGTTGAAGTGAAAGACGGTCATCTGATCGTTAACGGTAAAAAAATCCGTGTTACCGCTGAACGTGATCCGGCTAACCTGAAATGGGACGAAGTTGGTGTTGACGTTGTCGCTGa                                                                                        <  1:3964888/140‑1 (MQ=255)
                                           tCCACTCACGGCCGTTTCGACGGTACCGTTGAAGTGAAAGACGGTCATCTGATCGTTAACGGTAAAAAAATCCGTGTTACCGCTGAACGTGATCCGGCTAACCTGAAATGGGACGAAGTTGGTGTTGACGTTGTCGCTGa                                                                                        <  1:1716476/140‑1 (MQ=255)
                                            ccACTCACGGCCGTTTCGACGGTACCGTTGAAGTGAAAGACGGTCATCTGATCGTTAACGGTAAAAAAATCCGTGTTACCGCTGAACGTGATCCGGCTAACCTGAAATGGGACGAAGTTGGTGTTGACGTTGTCGCTGaa                                                                                       >  1:382515/1‑140 (MQ=255)
                                                tCACGGCCGTTTCGACGGTACCGTTGAAGTGAAAGACGGTCATCTGATCGTTAACGGTAAAAAAATCCGTGTTACCGCTGAACGTGATCCGGCTAACCTGAAATGGGACGAAGTTGGTGTTGACGTTGTCGCTGAAGCaa                                                                                   >  1:2385529/1‑140 (MQ=255)
                                                 cACGGCCGTTTCGACGGTACCGTTGAAGTGAAAGACGGTCATCTGATCGTTAACGGTAAAAAAATCCGTGTTACCGCTGAACGTGATCCGGCTAACCTGAAATGGGACGAAGTTGGTGTTGACGTTGTCGCTGAAGCAAc                                                                                  <  2:2564599/140‑1 (MQ=255)
                                                     gCCGTTTCGACGGTACCGTTGAAGTGAAAGACGGTCATCTGATCGTTAACGGTAAAAAAATCCGTGTTACCGCTGAACGTGATCCGGCTAACCTGAAATGGGACGAAGTTGGTGTTGACGTTGTCGCTGAAGCAACTGGt                                                                              <  1:72069/140‑1 (MQ=255)
                                                     gCCGTTTCGACGGTACCGTTGAAGTGAAAGACGGTCATCTGATCGTTAACGGTAAAAAAATCCGTGTTACCGCTGAACGTGATCCGGCTAACCTGAAATGGGACGAAGTTGGTGTTGACGTTGTCGCTGAAGCAACTGGt                                                                              <  1:1495021/140‑1 (MQ=255)
                                                     gCCGTTTCGACGGTACCGTTGAAGTGAAAGACGGTCATCTGATCGTTAACGGTAAAAAAATCCGTGTTACCGCTGAACGTGATCCGGCTAACCTGAAATGGGACGAAGTTGGTGTTGACGTTGTCGCTGAAGCAACTGGt                                                                              <  2:3679358/140‑1 (MQ=255)
                                                         tttCGACGGTACCGTTGAAGTGAAAGACGGTCATCTGATCGTTAACGGTAAAAAAATCCGTGTTACCGCTTAACGTGATCCGGCTAACCTGAAATGGGACGAAGTTGGTGTTGACGTTGTCGCTGAAGCAACTGGTCTGt                                                                          >  2:524390/1‑140 (MQ=255)
                                                         tttCGACGGTACCGTTGAAGTGAAAGACGGTCATCTGATCGTTAACGGTAAAAAAATCCGTGTTACCGCTGAACGTGATCCGGCTAACCTGAAATGGGACGAAGTTGGTGTTGACGTTGTCGCTGAAGCAACTGGTCTGt                                                                          >  2:4843273/1‑140 (MQ=255)
                                                                    ccGTTGAAGTGAAAGACGGTCATCTGATCGTTAACGGTAAAAAAATCCGTGTTACCGCTGAACGTGATCCGGCTAACCTGAAATGGGACGAAGTTGGTGTTGACGTTGTCGCTGAAGCAACTGGTCTGTTCCtgactgac                                                               >  1:1555444/1‑140 (MQ=255)
                                                                         gAAGTGAAAGACGGTCATCTGATCGTTAACGGTAAAAAAATCCGTGTTACCGCTGAACTTGATCCGGCTAACCTGAAATGGGACGAAGTTGGTGTTGACGTTGTCGCTGAAGCAACTGGTCTGTTCCTGACTGACGAAAc                                                          <  1:4234349/140‑1 (MQ=255)
                                                                           aGTGAAAGACGGTCATCTGATCGTTAACGGTAAAAAAATCCGTGTTACCGCTGAACGTGATCCGGCTAACCTGAAATGGGACGAAGTTGGTGTTGACGTTGTCGCTGAAGCAACTGGTCTGTTCCTGACTGACGAAACTg                                                        <  1:3123721/140‑1 (MQ=255)
                                                                            gTGAAAGACGGTCATCTGATCGTTAACGGTAAAAAAATCCGTGTTACCGCTGAACGTGATCCGGCTAACCTGAAATGGGACGAAGTTGGTGTTGACGTTGTCGCTGAAGCAACTGGTCTGTTCCTGACTGACGAAAc                                                          >  1:1896258/1‑137 (MQ=255)
                                                                            gTGAAAGACGGTCATCTGATCGTTAACGGTAAAAAAATCCGTGTTACCGCTGAACGTGATCCGGCTAACCTGAAATGGGACGAAGTTGGTGTTGACGTTGTCGCTGAAGCAACTGGTCTGTTCCTGACTGACGAAAc                                                          <  2:1896258/137‑1 (MQ=255)
                                                                            gTGAAAGACGGTCATCTGATCGTTAACGGTAAAAAAATCCGTGTTACCGCTGAACGTGATCCGGCTAACCTGAAATGGGACGAAGTTGGTGTTGACGTTGTCGCTGAAGCAACTGGTCTGTTCCTGACTGACGAAACTGc                                                       >  1:3882008/1‑140 (MQ=255)
                                                                                aaGACGGTCATCTGATCGTTAACGGTAAAAAAATCCGTGTTACCGCTGAACGTGATCCGGCTAACCTGAAATGGGACGAAGTTGGTGTTGACGTTGTCGCTGAAGCAACTGGTCTGTTCCTGACTGACGAAACTGCTCGt                                                   <  1:4695822/140‑1 (MQ=255)
                                                                                 aGACGGTGATCGGAGCGTTGTCGGTAAAAAAATCCGTCGTACTGCGGGAGGGGATCGGGGTAACCTGAAATGGGACGAAGTTGGTGTTGACGGTGTCGATGAAGCAACTGGTCTGTGCCTGACTTCCGAGACTCCTCGtc                                                  >  2:570498/1‑139 (MQ=255)
                                                                                 aGACGGTCATCTGAGCGTTAACGGTAAAAAAATCCGTGTTACCGCTGAACGTGATCCGGCTAACCTGAAATGGGACGAAGTTGGTGTTGACGTTGTCGCTGAAGCAACTGGTCTGTTCCTGACTGACGAAACTGCTCGTa                                                  >  1:559889/1‑140 (MQ=255)
                                                                                   aCGGTCATCTGATCGTTAACGGTAAAAAAATCCGTGTTACCGCTGAACGTGATCCGGCTAACCTGAAATGGGACGAAGTTGGTGTTGACGTTGTCGCTGAAGCAACTGGTCTGTTCCTGACTGACGAAACTGCTCGTaaa                                                <  1:221527/140‑1 (MQ=255)
                                                                                   aCGCTCATCTGATCGTTAACGGTAAAAAAATCCGTGTTACCGCTGAACGTGATCCGGCTAACCTGAAATGGGACTAAGTTGGTGTTGACGTTGTCGCTGAAGCAACTGGTCTGTTTCTGTCTGACGAAATTTCTCGTaaa                                                <  2:2508698/140‑1 (MQ=255)
                                                                                       tCATCTGATCGTTAACGGTAAAAAAATCCGTGTTACCGCTGAACGTGATCCGGCTAACCTGAAATGGGACGAAGTTGGTGTTGACGTTGTCGCTGAAGCAACTGGTCTGTTCCTGACTGACGAAACTGCTCGTAAAcaca                                            >  1:481029/1‑140 (MQ=255)
                                                                                         aTCTGATCGTTAACGGTAAAAAAATCCGTGTTACCGCTGAACGTGATCCGGCTAACCTGAAATGGGAc                                                                                                                  >  2:3588973/1‑68 (MQ=255)
                                                                                         aTCTGATCGTTAACGGTAAAAAAATCCGTGTTACCGCTGAACGTGATCCGGCTAACCTGAAATGGGAc                                                                                                                  <  1:3588973/68‑1 (MQ=255)
                                                                                         aTCTGATCGTTAACGGTAAAAAAATCCGTGTTACCGCTGAACGTGATCCGGCTAACCTGAAATGGGACGAAGTTGGTGTTGACGTTGTCGCTGAAGCAACTGGTCTGTTCCTGACTGACGAAACTGCTCGTAAACACATc                                          >  2:2772033/1‑140 (MQ=255)
                                                                                             gATCGTTAACGGTAAAAAAATCCGTGTTACCGCTGAACGTGATCCGGCTAACCTGAAATGGGACGAAGTTGGTGTTGACGTTGTCGCTGAAGCAACTGGTCTGTTCCTGACTGACGAAACTGCTCGTAAACACATCACCg                                      >  1:1754650/1‑140 (MQ=255)
                                                                                              aTCGTTAACGGTAAAAAAATCCGTGTTACCGCTGAACGTGATCCGGCTAACCTGAAATGGGACGAAGTTGGTGTTGACGTTGTCGCTGAAGCAACTGGTCTGTTCCTGACTGACGAAACTGCTCGTAAACACATCACCGc                                     >  1:4576694/1‑140 (MQ=255)
                                                                                                cGTTAACGGTAAAAAAATCCGTGTTACCGCTGAACGTGATCCGGCTAACCTGAAATGGGACGAAGTTGGTGTTGACGTTGTCGCTGAAGCAACTGGTCTGTTCCTGACTGACGAAACTGCTCGTAAACACATCACCGCTg                                   >  2:4575654/1‑140 (MQ=255)
                                                                                                 gTTAACGGTAAAAAAATCCGTGTTACCGCTGAACGTGATCCGGCTAACCTGAAATGGGACGAAGTTGGTGTTGACGTTGTCGCTGAAGCAACTGGTCTGTTCCTGACTGACGAAACTGCTCGTAAACACATCACCGCTgg                                  >  2:1518796/1‑140 (MQ=255)
                                                                                                 gTTAACGGTAAAAAAATCCGTGTTACCGCTGAACGTGATCCGGCTAACCTGAAATGGGACGAAGTTGGTGTTGACGTTGTCGCTGAAGCAACTGGTCTGTTCCTGACTGACGAAACTGCTCGTAAACACATCACCGCTgg                                  >  1:4261151/1‑140 (MQ=255)
                                                                                                   tAACGGTAAAAAAATCCGTGTTACCGCTGAACGTGATCCGGCTAACCTGAAATGGGACGAAGTTGGTGTTGACGTTGTCGCTGAAGCAAc                                                                                  >  1:797987/1‑90 (MQ=255)
                                                                                                   tAACGGTAAAAAAATCCGTGTTACCGCTGAACGTGATCCGGCTAACCTGAAATGGGACGAAGTTGGTGTTGACGTTGTCGCTGAAGCAAc                                                                                  <  2:797987/90‑1 (MQ=255)
                                                                                                   tAACGGTAAAAAAATCCGTGTTACCGCTGAACGTGATCCGGCTAACCTGAAATGGGACGAAGTTGGTGTTGACGTTGTCGCTGAAGCAACTGGTCTGTTCCTGACTGACGAAACTGCTCGTAAACACATCACCGCTGGTg                                >  2:3988230/1‑140 (MQ=255)
                                                                                                   tAACGGTAAAAAAATCCGTGTGACCGCTGAACGTGATCCGGCTAACCTGAAATGGGACGAAGGTGGTGTTGACGTTGTGGCTGAAGCAACTGGTCTGTTCCTGACTGACGAAACGGCTCGTAAACACATCACCGCTGGTg                                >  2:290278/1‑140 (MQ=255)
                                                                                                    aaCGGTAAAAAATTCCGTGTTACCGCTGAACGTGATCCGGCTAACCTGAAATGGGACGAAGTTGGTGTTGACGTTGTCGCTGAAGCAACTGGTCTGTTCCTGACTGACGAAACTGCTCGTAAACACATCACCGCTGGTGc                               >  2:5041763/1‑140 (MQ=255)
                                                                                                     aCGGTAAAAAAATCCGTGTTACCGCTGAACGTGATCCGGCTAACCTGAAATGGGACGAAGTTGGTGTTGACGTTGTCGCTGAAGCAAGTGGTCTGTTCCTGACTGACGAAACTGCTCGTAAACACATCACCGCTGGTGCg                              >  1:3644236/1‑140 (MQ=255)
                                                                                                        gTAAAAAAATCCGTGTTACCGCTGAACGTGATCCGGCTAACCTGAAATGGGACGAAGTTGGTGTTGACGTTGTCGCTGAAGCAACTGGTCTGTTCCTGACTGACGAAACTGCTCGTAAACACATAACCGCTGGTGCgaag                           >  2:672533/1‑140 (MQ=255)
                                                                                                         tAAAAAAATCCGTGTTACCGCTGAACGTGATCCGGCTAACCTGAAATGGGACGAAGTTGGTGTTGACGTTGTCGCTGAAGCAACTGGTCTGTTCCTGACTGACGAAACTGCTCGTAAACACATCACCGCTGGTGCgaaga                          >  1:371699/1‑140 (MQ=255)
                                                                                                         tAAAAAAATCCGTGTTACCGCTGAACGTGATCCGGCTAACCTGAAATGGGACGAAGTTGCTGTTGACGTTGTCGCTGAAGCAACTGGTCTGTTCCTGACTGACGAAACTGCTCGTAAACACATCACCGCTGGTGCgaaga                          <  1:4064477/140‑1 (MQ=255)
                                                                                                           aacaactCCGTTTTCCCGCTGAACGTGATCCGCCTAACCTGAAATGGGACGAAGTTCGTGTTGACGTTGTCGCGGAAGCAGCTGGTCTGTTCCTGACTGACGAAACTGCTCGTAAACCCATCACCGCTGGTGCGAAGaaa                        <  2:2474610/134‑1 (MQ=255)
                                                                                                           aaaaaaTCCGTGTTACCGCTGACCGTGCTCCGGCTAACCTGAAATGGGACGCAGTTGGTGTTGACGTTGTCGGTGAAGCAACTGGTCTGTTCCTGACTGACGCAACTGCTCGCAAACACATCCCCGCTGGTGCGAAGaaa                        <  2:4110859/140‑1 (MQ=255)
                                                                                                           aaaaaaTCCGTGTTACCGCTGAACGTGATCCGGCTAACCTGAAATGGGACGAAGTTGGTGTTGACGTTGTCGCTGAAGCAACTGGTCTGTTCCTGACTGACGAAACTGCTCGTAAACACATCACCGCTGGTGCGAAGaaa                        <  1:446360/140‑1 (MQ=255)
                                                                                                           aaaaaaTCCGTGTTACCGCTGAACGTGATCCGGCTAACCTGAAATGGGACGAAGTTGGTGTTGACGTTGTCGCTGAAGCAACTGGTCTGTTCCTGACTGACGAAACTGCTCGTAAACACATCACCGCTGGTGCGAAGaaa                        <  2:1064492/140‑1 (MQ=255)
                                                                                                           aaaaaaTCCGTGTTACCGCTGAACGTGATCCGGCTAACCTGAAATGGGACGAAGTTGGTGTTGACGTTGTCGCTGAAGCAACTGGTCTGTTCCTGACTGACGAAACTGCTCGTAAACACATCACCGCTGGTGCGAAGaaa                        <  1:2153640/140‑1 (MQ=255)
                                                                                                           aaaaaaTCCGTGTTACCGCTGAACGTGATCCGGCTAACCTGAAATGGGACGAAGTTGGTGTTGACGTTGTCGCTGAAGCAACTGGTCTGTTCCTGACTGACGAAACTGCTCGTAAACACATCACCGCTGGTGCGAAGaaa                        <  2:4512498/140‑1 (MQ=255)
                                                                                                           aaaaaaTCCGTGTTACCGCTGAACGTGATCCGGCTAACCTGAAATGGGACGAAGTTGGTGTTGACGTTGTCGCTGAAGCAACTGGTCTGTTCCTGACTGACGAAACTGCTCGTAAACACATCACCGCTGGTGCGAAGaaa                        <  1:3233493/140‑1 (MQ=255)
                                                                                                           aaaaaaTCCGTGTTACCGCTGAACGTGATCCGGCTAACCTGAAATGGGACGAAGTTGGTGTTGACGTTGTCGCTGAAGCAACTGGTCTGTTCCTGACTAACGAAACTGCTCGTAAACACATCACCGCTGGTGCGAAGaaa                        <  1:2625866/140‑1 (MQ=255)
                                                                                                            aaaaaTCCGTGTTATAGCTGAACGTGATCCGGCTAACCTGAAATGGGACGAAGTTGGTGTTGACGTTGTCGCTGAAGCAACTGGTCTGTTCCTGACTGCCGAAACTGCTCGTAAACACCTCACCGCTGGTGCgaagaacg                       <  2:2672739/140‑3 (MQ=255)
                                                                                                                aTCCGTGTTACCGCTGAACGTGATCCGGCTAACCTGAAATGGGACGAAGTTGGTGTTGACGTTGTCGCTGAAGCAACTGGTCTGTTCCTGACTGACGAAACTGCTCGTAAACACATCACCGCTGGTGCGAAGAAAGTGGt                   <  2:3074027/140‑1 (MQ=255)
                                                                                                                aTCCGTGTTACCGCTGAACGTGATCCGGCTAACCTGAAATGGGACGAAGTTGGTGTTGACGTTGTCGCTGAAGCAACTGGTCTGTTCCTGACTGACGAAACTGCTCGTAAACACATCACCGCTGGTGCGAAGAAAGTGGt                   <  1:2846622/140‑1 (MQ=255)
                                                                                                                aTCCGTGTTACCGCTGAACGTGATCCGGCTAACCTGAAATGGGACGAAGTTGGTGTTGACGTTGTCGCTGAAGCAACTGGTCTGTTCCTGACTGACGAAACTGCTCGTAAACACATCACCGCTGGTGCGAAGAAAGTGGt                   <  2:882645/140‑1 (MQ=255)
                                                                                                                aTCCGTGTTACCGCTGAACGTGATCCGGCTAACCTGAAATGGGACGAAGTTGGTGTTGACGTTGTCGCTGAAGCAACTGGTCTGTTCCTGACTGACGAAACTGCTCGTAAACACATCACCGCTGGTGCGAAGAAAGTGGt                   <  1:250709/140‑1 (MQ=255)
                                                                                                                 tCCGTGTTACCGCTGAACGTGATCCGGCTAACCTGAAATGGGACGAAGTTGGTGTTGACGTTGTCGCTGAAGCAACTGGTCTGTTCCTGACTGACGAAACTGCTCGTAAACACATCACCGCTGGTGCGAAGAAAGTGGtt                  >  2:310509/1‑140 (MQ=255)
                                                                                                                 tCCGTGTTACCGCTGAACGTGATCCGGCTAACCTGAAATGGGACGAAGTTGGTGTTGACGTTGTCGCTGAAGCAACTGGTCTGTTCCTGACTGACGAAACTGCTCGTAAACACATCACCGCTGGTGCGAAGAAAGTGGtt                  >  2:3842916/1‑140 (MQ=255)
                                                                                                                     tgtTACCGCTGAACGTGATCCGGCTAACCTGACATGGGACGAAGTTGGTGTTGACGTTGTCTCTGAAGCAACTGGTCTGTTCCTGACTGACGGAACTGCTCGTAAACACATCACCGCTGGTGCGAAGAAAGTGGTTATGa              >  1:4005708/1‑140 (MQ=255)
                                                                                                                     tgtTACCGCTGAACGTGATCCGGCTAACCTGAAATGGGACGAAGTTGGTGTTGACGTTGTCGCTGAAGCAACTGGTCTGTTCCTGACTGACGAAACTGCTCGTAAACACATCACCGCTGGTGCGAAGAAAGTGGTTATGa              >  1:5094261/1‑140 (MQ=255)
                                                                                                                     tgtTACCGCTGAACGTGATCCGGCTAACCTGAAATGGGACGAAGTTGGTGTTGACGTTGTCGCTGAAGCAACTGGTCTGTTCCTGACTGACGAAACTGCTCGTAAACACATCACCGCTGGTGCGAAGAAAGTGGTTATGa              <  2:3936716/140‑1 (MQ=255)
                                                                                                                         aCCGCTGAACGTGATCCGGCTAACCTGAAATGGGACGAAGTTGGTGTTGACGTTGTCGCTGACGCAACTGGTATGTTCCTGACTGACGAAACTGCTCGTAAACACATCACCGCTGGTGCGAAGAAAGTGGTTATGACTgg          <  1:3076348/140‑1 (MQ=255)
                                                                                                                          ccGCTGCACGTGATCCGGCTAACCTGAAATGGGACGAAGTTGGTGTTGACGTTGTCTCTGAAGCAACTGGTCTGTTCCTGACTGACGAAACTGCTCGTAAACACATCACCGCGGGTGCGAAGAAAGTGGTCATGACTGGt         <  2:1130312/140‑1 (MQ=255)
                                                                                                                          ccGCTGAACGTGATCCGGCTAACCTGAAATGGGACGAAGTTGGTGTTGACGTTGTCGCTGAAGCAACTGGTCTGTTCCTGACTGACGAAACTGCTCGTAAACACATCACCGCTGGTGCGAAGAAAGTGGTTATGACTGGt         <  1:777483/140‑1 (MQ=255)
                                                                                                                          ccGCTGAACGTGATCCGGCTAACCTGAAATGGGACGAAGTTGGTGTTGACGTTGTCGCTGAAGCAACTGGTCTGTTCCTGACTGACGAAACTGCTCGTAAACACATCACCGCTGGTGCGAAGAAAGTGGTTATGACTGGt         <  1:951300/140‑1 (MQ=255)
                                                                                                                          ccGCTGAACGTGATCCGGCTAACCTGAAATGGGACGAAGTTGGTGTTGACGTTGTCGCTGAAGCAACTGGGCTGTTCCTGACTGACGAAACTGCTCGTAAACACATCACCGCTGGTGCGAAGAAAGTGGTTATGACTGGt         <  2:1247041/140‑1 (MQ=255)
                                                                                                                           cGCTGAACGTTCTCCGGCTAACCTGAAATGGGACGAAGTTGGTGTTGACGTTGTCGCTGAAGCAACTGGTCTGTTCCTGACTGACGAAACTGCTCGTAAACACATCACCGCTGGTGCGAAGAAAGTGGTTATGACTGGTc        <  2:1370324/140‑1 (MQ=255)
                                                                                                                           cGCTGAACGTGATCCGGCTAACCTGAAATGGGACGAAGTTGGTGTTGACGTTGTCGCTGAAGCAACTGGTCTGTTCCTGACTGACGAAACTGCTCGTAAACACATCACCGCTGGTGCGAAGAAAGTGGTTATGACTGGTc        <  2:3256740/140‑1 (MQ=255)
                                                                                                                           cGCTGAACGTGATCCGGCTAACCTGAAATGGGACGAAGTTGGTGTTGACGTTGTCGCTGAAGCAACTGGTCTGTTCCTGACTGACGAAACTGCTCGTAAACACATCACCGCTGGTGCGAAGAAAGTGGTTATGACTGGTc        <  2:2977211/140‑1 (MQ=255)
                                                                                                                           cGCTGAACGTGATCCGGCTAACCTGAAATGGGACGAAGTTGGTGTTGACGTTGTCGCTGAAGCAACTGGTCTGTTCCTGACTGACGAAACTGCTCGTAAACACATCACCGCTGGTGCGAAGAAAGTGGTTATGACTGGTc        <  1:4283759/140‑1 (MQ=255)
                                                                                                                           cGCTGAACGTGATCCGGCTAACCTGAAATGGGACGAAGTTGGTGTTGACGTTGTCGCTGAAGCAACTGGTCTGTTCCTGACTGACGAAACTGCTCGTAAACACATCACCGCTGGTGCGAAGAAAGTGGTTATGACTGGTc        <  1:3489777/140‑1 (MQ=255)
                                                                                                                           cGCTGAACGTGATCCGGCTAACCTGAAATGGGACGAAGTTGGTGTTGACGTTGTCGCTGAAGCAACTGGTCTGTTCCTGACTGACGAAACTGCTCGTAAACACATCACCGCTGGTGCGAAGAAAGTGGTTATGACTGGTc        <  1:3418538/140‑1 (MQ=255)
                                                                                                                           cGCTGAACGTGATCCGGCTAACCTGAAATGGGACGAAGTTGGTGTTGACGTTGTCGCTGAAGCAACTGGTCTGTTCCTGACTGACGAAACTGCTCGTAAACACATCACCGCTGGTGCGAAGAAAGTGGTTATGACTGGTc        <  1:3353933/140‑1 (MQ=255)
                                                                                                                           cGCTGAACGTGATCCGGCTAACCTGAAATGGGACGAAGTTGGTGTTGACGTTGTCGCTGAAGCAACTGGTCTGTTCCTGACTGACGAAACTGCTCGTAAACACATCACCGCTGGTGCGAAGAAAGTGGTTATGACTGGTc        <  1:2772033/140‑1 (MQ=255)
                                                                                                                           cGCTGAACGTGATCCGGCTAACCTGAAATGGGACGAAGTTGGTGTTGACGTTGTCGCTGAAGCAACTGGTCTGTTCCTGACTGACGAAACTGCTCGTAAACACATCACCGCTGGTGCGAAGAAAGTGGTTATGACTGGTc        <  1:1069904/140‑1 (MQ=255)
                                                                                                                               gAACGTGATCCGGCTAACCTGAAATGGGACGAAGTTGGTGTTGACGTTGTCGCTGAAGCAACTGGTCTGTTCCTGACTGTCGAAACTACTCGTAAACACATAACCGCTGGTGCGAAGAGAGTGTTGATTACTTGTCCgac    >  2:2200881/1‑138 (MQ=255)
                                                                                                                                aaCGTGATCCGGCTAACCTGAAATGGGACGAAGTTGTTGTTGACGTTGTCGCTGAAGCAACTGGTCTGTTCCTGACTGACGAAACTGCTCGTAAACACATCACCGCTGGTGCGAAGAAAGTGGTTATGACTGGTCCGTCt   >  1:3916967/1‑140 (MQ=255)
                                                                                                                                aaCGTGATCCGGATAACCTGAAATGGGACGAAGTTGGTGTTGACGTTGTCGCTGAAGCAACTGGTCTGTTCCTGACTGACGAAACTGCTCGTAACCACATCACCGCTGGTGCGAAGAAAGTGGTTATGACTGGTCCGTCt   <  1:4349966/140‑1 (MQ=255)
                                                                                                                                    |                                                                                                                                        
CCTGTTAGACGCTGATTACATGGCATACATGCTGAAATATGACTCCACTCACGGCCGTTTCGACGGTACCGTTGAAGTGAAAGACGGTCATCTGATCGTTAACGGTAAAAAAATCCGTGTTACCGCTGAACGCGATCCGGCTAACCTGAAATGGGACGAAGTTGGTGTTGACGTTGTCGCTGAAGCAACTGGTCTGTTCCTGACTGACGAAACTGCTCGTAAACACATCACCGCTGGTGCGAAGAAAGTGGTTATGACTGGTCCGTCTA  >  NZ_CP025268/1867687‑1867955

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: