Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NZ_CP025268	2,788,551	T→C	pseudogene (483/1374 nt)	CXP41_RS24250 ←	DUF5507 domain‑containing protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NZ_CP025268	2,788,551	0	T	C	100.0%	273.9 / NA	84	pseudogene (483/1374 nt)	CXP41_RS24250	DUF5507 domain‑containing protein
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (47/37);  total (47/37)

CATCTATTTTGTTTTCATATGAATTACGTGATTCCATACAGACATTTGGCGGCGTTTCTAAAATAACACTACGCGTACTACTTGGCTTAAGTAAACCAACATGAAAATCACTTTTTCTTATATTATCGAAAAGGTTTTATTCATTTCTTTTAGCGCATTCAAAAAACTGATCGGCATTATTTTTATTCGATAATTTTTTAGTTTCAGAAAACACATTTTCATTGTTTTCCAGCTTTAGTTTAATGAGAAGATTTTCCCAGACCTGCTTGCTT  >  NZ_CP025268/2788415‑2788686                                                                                                                                         |                                                                                                                                        cATCTATTTTGTTTTCATATGAATTACGTGATTCCATACAGACATTTGGCGGCGTTTCTAAAATAACACTACGCGTACTACTTGGCTTAAGTAAACCAACATGAAAATCACTTTTTCTTATATTATCGAAAAGGTTCTAt                                                                                                                                      <  2:1014801/140‑1 (MQ=255)  aTCTATTTTGTTTTCATATGAATTACGTGATTCCATACAGACATTTGGCGGCGTTTCTAAAATAACACTACGCGTACTACTTGGCTTAAGTAAACCAACATGAAAATCACTTTTTCTTATATTATCGAAAAGGTTCTAtt                                                                                                                                     >  1:2313034/1‑140 (MQ=255)  aTCTATTTTGTTTTCATATGAATTACGTGATTCCATACAGACATTTGGCGGCGTTTCTAAAATAACACTACGCGTACTACTTGGCTTAAGTAAACCAACATGAAAATCACTTTTTCTTATATTATCGAAAAGGTTCTAtt                                                                                                                                     >  2:3096543/1‑140 (MQ=255)   tCTATTTTGTTTTTATATGAATTACGTGATTCCATACAGACATTTTGCGGCGTTTCTAAAATAACACTCCGCGTACTACTTGGCTTAAGTAACCCCAACTGAAAATCACTTTTTCTTATATTATCGAACAAGTTCTATTc                                                                                                                                    <  2:966385/140‑1 (MQ=255)   tCTATTTTGTTTTCATATGAATTACGTGATTCCATACAGACATTTGGCGGCGTTTCTAAAATAACACTACGCGTACTACTTGGCTTAAGTAAACCAACATGAAAATCACTTTTTCTTATATTATCGAAAAGGTTCTATTc                                                                                                                                    <  2:963647/140‑1 (MQ=255)     tATTTTGTTTTCATATGAATTACGTGATTCCATACAGACATTTGGCGGCGTTTCTAAAATAACACTACGCGTACTACTTGGCTTAAGTAAACCAACATGAAAATCACTTTTTCTTATATTATCGGAAAGGTTCTATTCAt                                                                                                                                  <  2:2910861/140‑1 (MQ=255)          tGTTTTCATATGAATTACGTGATTCCATACAGACATTTGGCGGAGCTTCTAAAATAACACTACGCGTACTACTTGGCTTAAGTAAACCAACATGAAAATCACTTTTTCTTATATTATCGAAAAGGTTCTATTCATTTCtt                                                                                                                             >  2:1511877/1‑140 (MQ=255)          tGTTTTCATATGAATTACGTGATTCCATACAGACATATGGCGGCGTTTCTAAAATAACACTACGCGTACTACTTGGCTTAAGTAAACCAACATGGAAATCACTTTTTCTTATATTATCGAAAAGGTTCTATTCATTTCtt                                                                                                                             >  2:4399096/1‑140 (MQ=255)            ttttCATATGAATTACGTGATTCCATACAGACATTTGGCGGCGTTTCTAAAATAACACTACGCGTACTACTTGGCTTAAGTAAACCAACATGAAAATCACTTTTTCTTATATTATCGAAAAGGTTCTATTCATTTCtttt                                                                                                                           >  1:2746891/1‑140 (MQ=255)            ttttCATATGAATTACGTGATTCCATACAGACATTTGGCGGCGTTTCTAAAATAACACTACGCGTACTACTTGGCTTAAGTAAACCAACATGAAAATCACTTTTTCTTATATTATCGAAAAGGTTCTATTCATTTCtttt                                                                                                                           >  1:4031718/1‑140 (MQ=255)                 ctatGAATTACGTGACTACATACCGACATTTGGCGGCGTCTATACAATAACACTACGCGTACTACTTGGCTTAAGTAAACCAACATGAAAATCACTTTTTCTTATATTCTCGAAAAGGTTCTATTCATTTCTTTTAgcgc                                                                                                                      <  2:2892480/139‑1 (MQ=255)                 atatGAATTACGTGATTCCATACAGACATTTGGCGGCGTTTCTAAAATAACACTACGCGTACTACTTGGCTTAAGTAAACCAACATGAAAATCACTTTTTCTTATATTATCGAAAAGGTTCTATTCATTTCTTTTAgcgc                                                                                                                      <  2:2449498/140‑1 (MQ=255)                 atatGAATTACGTGATTCCATACAGACATTTGGCGGCGTTTCTAAAATAACACTACGCGTACTACTTGGCTTAAGTAAACCAACATGAAAATCACTTTTTCTTATATTATCGAAAAGGTTCTATTCATTTCTTTTAgcgc                                                                                                                      >  1:3529176/1‑140 (MQ=255)                 atatGAATTACGTGATTCCATACAGACATTTGGCGGCGTTTCTAAAATAACACTACGCGTACTACTTGGCTTAAGTAAACCAACATGAAAATCACTTTTTCTTATATTATCGAAAAGGTTCTATTCATTTCTTTTAgcgc                                                                                                                      <  1:2289793/140‑1 (MQ=255)                 atatGAATTACGTGATTCCATACAGACATTTGGCGGCGTTTCTAAAATAACACTACGCGTACTACTTGGCTTAAGTAAACCAACATGAAAATCACTTTTTCTTATATTATCGAAAAGGTTCTATTCATTTCTTTTAgcgc                                                                                                                      <  2:3574801/140‑1 (MQ=255)                 atatGAATTACGTGATTCCATACAGACATTTGGCGGCGTTTCTAAAATAACACTACGCGTACTACTTGGCTTAAGTAAACCAACATGAAAATCACTTTTTCTTATATTATCGAAAAGGTTCTATTCATTTCTTTTAgcgc                                                                                                                      <  1:328399/140‑1 (MQ=255)                   atGAATTACGTGATTCCATACAGACATTTGGCGGCGTTTCTAAAATAACACTACGCGTACTACTTGGCTTAAGTAAACCAACATGAAAATCACTTTTTCTTATATTATCGAAAAGGTTCTATTCATTTCTTTTAGCGCAt                                                                                                                    <  1:1192162/140‑1 (MQ=255)                      aaTTACGTGATTCCATACAGACATTTGGCGGCGTTTCTAAAATAACACTACGCGTACTACTTGGCTTAAGTAAACCAACATGAAAATCACTTTTTCTTATATTATCGAAAAGGTTCTATTCATTTCTTTTAGCGCATTCa                                                                                                                 <  1:4645017/140‑1 (MQ=255)                        ttACGTGATTCCATACAGACATTTGGCGGCGTTTCTAAAATAACACTACGCGTACTACTTGGCTTAAGTAAACCAACATGAAAATCACTTTTTCTTATATTATCGAAAAGGTTCTATTCATTTCTTTTAGCGCATTCaaa                                                                                                               >  2:4278886/1‑140 (MQ=255)                         tACGTGATTCCATACAGACATTTGGCGGCGTTTCTAAAATAACACTACGCGTACTACTTGGCTTAAGTAAACCAACATGAAAATCACTTTTTCTTATATTATCGAAAAGGTTCTATTCATTTCTTTTAGCGCATTCaaaa                                                                                                              <  2:4301633/140‑1 (MQ=255)                           cGTGATTCCATACAGACATTTGGCGGCGTTTCTAAAATAACACTACGCGTACTACTTGGCTTAAGTAAACCAACATGAAAATCACTTTTTCTTATATTATCGAAAAGGTTCTATTCATTTCTTTTAGCGCATTCaaaaaa                                                                                                            <  2:83716/140‑1 (MQ=255)                           cGTGATTCCATACAGACATTTGGCGGCGTTTCTAAAATAACACTACGCGTACTACTTGGCTTAAGTAAACCAACATGAAAATCACTTTTTCTTATATTATCGAAAAGGTTCTATTCATTTCTTTTAGCGCATTCaaaaaa                                                                                                            >  1:926057/1‑140 (MQ=255)                            gTGATTCCATACAGACATTTGGCGGCGTTTCTAAAATAACACTACGCGTACTACTTGGCTTAAGTAAACCAACATGAAAATCACTTTTTCTTATATTATCGAAAAGGTTCAATTCATTTCTTTTAGCGCATTCAAAAAAc                                                                                                           >  2:1346638/1‑140 (MQ=255)                            gTGATTCCATACAGACATTTGGCGGCGATTCTAAAATAACACTACGCGTACTACTTGGCTTAAGTAAACCAACATGAAAATCACTTATTCTTATATTATCGAAAAGGTTCTATTCATTTCTTTTAGCGCATTCAAAAAAc                                                                                                           >  2:1346598/1‑140 (MQ=255)                            gTGATTCCATACAGACATTTCGCGGCGTTTCTAAAATAACACTACGCGTACTACTTGGCTTAAGTAAACCAACATGAAAATCACATTTTCTTATATTATCGAAAAGGTGCTATTCATTTCTATTAGCGCATTCAAAAAAc                                                                                                           >  2:1346662/1‑140 (MQ=255)                                ttCGATACAGACATTTGGCGGCGTTTCTAAAATAACACTACGCGTACTACTTGGCTTAAGTAAACCAACATGAAAATCACTTTTTCTTATATTATCGAAAAGGTTCTATGCATTTCTTTTAGCGCATTCAAAAAACGGAt                                                                                                       >  2:4088029/1‑140 (MQ=255)                                ttCCATACAGACATTTGGCGGCGTTTCTAAAATAACACTACGCGTACTACTTGGCTTAAGTAAACCAACATGAAAATCACTTTTTCTTATATTATCGAAAAGGTTCTATTCATTTCTTTTAGCGCATTCAGAAAACTGAt                                                                                                       >  2:3515842/1‑140 (MQ=255)                                ttCCATACAGACATTTGGCGGCGTTTCTAAAATAACACTACGCGTACTACTTGGCTTAAGTAAACCAACATGAAAATCACTTTTTCTTATATTATCGAAAAGGTTCTATTCATTTCTTTTAGCGCATTCAAAAAACTGAt                                                                                                       <  1:4309646/140‑1 (MQ=255)                                ttCCATACAGACATTTGGCGGCGTTTCTAAAATAACACTACGCGTACTACTTGGCTTAAGTAAACCAACATGAAAATCACTTTTTCTTATATTATCGAAAAGGTTCTATTCATTTCTTTTAGCGCATTCAAAAAACTGAt                                                                                                       <  1:4406165/140‑1 (MQ=255)                                ttCCATACAGACATTTGGCGGCGTTTCTAAAATAACACTACGCGTACTACTTGGCTTAAGTAAACCAACATGAAAATCACTTTTTCTTATATTATCGAAAAGGTTCTATTCATTTCTTTTAGCGCATTCAAAAAACTGAt                                                                                                       <  1:4406073/140‑1 (MQ=255)                                ttCCATACAGACATTTGGCGGCGTTTCTAAAATAACACTACGCGTACTACTTGGCTTAAGTAAACCAACATGAAAATCACTTTTTCTTATATTATCGAAAAGGTTCTATTCATTTCTTTTAGCGCATTCAAAAAACTGAt                                                                                                       >  1:1899321/1‑140 (MQ=255)                                ttCCATACAGACATTTGGCGGCGTTTCTAAAATAACACTACGCGTACTACTTGGCTTAAGTAAACCAACATGAAAATCACTTTTTCTTATATTATCGAAAAGGTTCTATTCATTTCTTTTAGCGCATTCAAAAAACTGAt                                                                                                       >  1:288586/1‑140 (MQ=255)                                ttCCATACAGACAGTTGGCGGCGTGTCTAAAATAACACGACGCGTACTTCTTGGCTTAAGTAAACCAACATGACACTCACTTTTTCTTATATTATCGAAAGGGTGCTATTCATTTCTTTTAGCGCATTCAAAAAACTgtt                                                                                                       <  2:667095/140‑3 (MQ=255)                                     tACAGACATTTGGCGGCGTTTCTAAAATAACACTACGCGTACTACTTTGCTTAAGTAAACCAACTTGAAAATCACTTTTTCTTATATTATCGACAAGGTTCTATTCATTTCTTTTAGCGCATTCAAAAAACTGATCGGCa                                                                                                  <  2:4097916/140‑1 (MQ=255)                                     tACAGACATTTGGCGGCGTTTCTAAAATAACACTACGCGTACTACTTGGCTTAAGTAAACCAACATGAAAATCACTTTTTCTTATATTATCGAAAAGGTTCTATTCATTTCTTTTAGCGCATTCAAAAAACTGATCGGCa                                                                                                  >  1:1321361/1‑140 (MQ=255)                                     tACAGACATTTGGCGGCGTTTCTAAAATAACACTACGCGTACTACTTGGCTTAAGTAAACCAACATGAAAATCACTTTTTCTTATATTATCGAAAAGGTTCTATTCATTTCTTTTAGCGCATTCAAAAAACTGATCGGCa                                                                                                  <  2:4097796/140‑1 (MQ=255)                                     tACAGACATTTGGCGGCGTTTCTAAAATAACACTACGCGTACTACTTGGCTTAAGTAAACCAACATGAAAATCACTTTTTCTTATATTATCGAAAAGGTCCTATTCATTTCTTTTAGCGCATTCAAAAAACTGATCGGCa                                                                                                  >  1:1443765/1‑140 (MQ=255)                                          aCATTTGGCGGCGTTTCTAAAATAACACTACGCGTACTACTTGGCTTAAGTATGCCAACATGAAAATCACTTTTTCTTATATTATCGAAAAGGTTCTATTCATTTCTTTTAGCGCATTCAAAAAACTGATCGGCatgatt                                                                                             >  1:1640879/1‑140 (MQ=255)                                          aCATTTGGCGGCGTTTCTAAAATAACACTACGCGTACTACTTGGCTTAAGTAAACCAACATGAAAATCACTTTTTCTTATATTATCGCAAAGGTTCTATTCATTTCTTTTAGCGCATTCAAAAAACTGATCGGCattatt                                                                                             >  1:3626469/1‑140 (MQ=255)                                          aCATTTGGCGGCGTTTCTAAAATAACACTACGCGTACTACTTGGCTTAAGTAAACCAACATGAAAATCACTTTTTCTTATATTATCGAAAAGGTTCTATTCATTTCTTTTAGCGCATTCAAAAAACTGATCGGCattatt                                                                                             >  2:2097293/1‑140 (MQ=255)                                          aCATTTGGCGGCGTTTCTAAAATAACACTACGCGTACTACTTGGCTTAAGTAAACCAACATGAAAATCACTTTTTCTTATATTATCGAAAAGGTTCTATTCATTTCTTTTAGCGCATTCAAAAAACTGATCGGCattatt                                                                                             >  1:335142/1‑140 (MQ=255)                                               tGGCGGCGTTTCTAAAATAACACTACGCGTACTACTTGGCTTAAGTAAACCAACATGAAAATCACTTTTTCTTATATTATCGAAAAGGTTCTATTCATTTCTTTTAGCGCATTCAAAAAACTGATCGGCATTATTTTTAt                                                                                        >  2:1239757/1‑140 (MQ=255)                                               tGGCGGCGTTTCTAAAATAACACTACGCGTACTACTTGGCTTAAGTAAACCAACATGAAAATCACTTTTTCTTATATTAGAGAAAAGGTTCTATTCATTTCTTTTAGCGCATTCAAAAAACTGATCGGCATTATTTTTAt                                                                                        >  1:2826988/1‑140 (MQ=255)                                               tGGCGGCGTTTCTAAAATAACACTACGCGGACTACTTGGCTGAAGTGGACCAACATGAAACTCACTTTTTCTTATATTATCGAAAAGGTTCTCTTCATTTCTTTCAGCGCATTCAAAAAACTGAGCGGCTTTTTTGTTAt                                                                                        >  2:1814699/1‑140 (MQ=255)                                                                tAACACTACGCGTACTACTTGGCTTAAGTAAACCAACATGAAAATCACTTTTTCTTATATTATCGAAAAGGTTCTATTCATTTCTTTTAGCGCATTCAAAAAACTGATCGGCATTATTTTTATTCGATAATTTTTTAGtt                                                                       <  1:1538561/140‑1 (MQ=255)                                                                 aaCACTACGCGTACTACTTGGCTTAAGTAAACCAACATGAAAATCACTTTTTCTTATATTATCGAAAAGGTTCTATTCATTTCTTTTAACGCATTCAAAAAACTGATCGGCATTATTTTTATTCGATAATTTTTTAGttt                                                                      <  1:3071094/140‑1 (MQ=255)                                                                        ctcttactatTTGTCTTAAGTAAACCAACATGAACATCACTTTTTCTTATATTATCGACAAGGTTCGATTCATTTCTGTTAGCGCATTCAAAAAACTGATCGTCATTAATTTTATTCGATAATTTTTTAGTTTCAGacaa                                                               <  2:4063886/136‑1 (MQ=255)                                                                        cgcgTACTACTTGGCTTAAGTAAACCAACATGAAAATCACTTTTTCTTATATTATCGAAAAGGTTCTATTCATTTCTTTTAGCGCATTCAAAAAACTGATCGGCATTATTTTTATTCGATAATTTTTTAGTTTCAGaaaa                                                               >  1:1835677/1‑140 (MQ=255)                                                                        cgcgTACTACTTGGCTTAAGTAAACCAACATGAAAATCACTTTTTCTTATATTATCGAAAAGGTTCTATTCATTTCTTTTAGCGCATTCAAAAAACTGATCGGCATTATTTTTATTCGATAATTTTTTAGTTTCAGaaaa                                                               <  1:4627309/140‑1 (MQ=255)                                                                        cgcgTACTACTTGGCTTAAGTAAACCAACATGAAAATCACTTTTTCTTATATTATCGAAAAGGTGCTATTCATTTCTTTTAGCGCATTCAAAAAACTGATCGGCATTATTTTTATTCGATAATTTTTTAGTTTCAGaaaa                                                               >  2:2658509/1‑140 (MQ=255)                                                                           gTACTACTTGGCTTAAGTAAACCAACATGAAAATCACTTTTTCTTATATTATCGAAAAGGTTCTATTCATTTCTTTTAGCGCATTCAAAAAACTGATCGGCATTATTTTTATTCGATAATTTTTTAGTTTCAGAAAacac                                                            <  1:2624957/140‑1 (MQ=255)                                                                             actactTGGCTTAAGTAAACCAACATGAAAATCACTTTTTCTTATATTATCGAAAAGGTTCTATTCATTTCTTTTAGCGCATTCAAAAAACTGATCGGCATTATTTTTATTCGATAATTTTTTAGTTTCAGAAAACACAt                                                          >  1:4629529/1‑140 (MQ=255)                                                                              ctactTGGCTTAAGTAAACCAACATGAAAATCACTTTTTCTTATATTATCGAAAAGGTTCTATTCATTTCTTTTAGCGCATTCAAAAAACTGATCGGCATTATTTTTATTCGATAATTTTTTAGTTTCAGAAAACACAtt                                                         >  2:1893988/1‑140 (MQ=255)                                                                              ctactTGGCTTAAGTAAACCAACATGAAAATCACTTTTTCTTATATTATCGAAAAGGTTCTATTCATTTCTTTTAGCGCATTCAAAAAACTGATCGGCATTATTTTTATTCGATAATTTTTTAGTTTCAGAAAACACAtt                                                         >  2:1894195/1‑140 (MQ=255)                                                                                  ttGGCTTAAGTAAACCAACATGAAAATCACTTTTTCTTATATTATCGAAAAGGTTCTATTCATTTCTTTTAGCGCATTCAAAAAACTGATCGGCATTATTTTTATTCGATAATTTTTTAGTTTCAGAAAACACATTTTCa                                                     >  2:2944825/1‑140 (MQ=255)                                                                                    ggCTTAAGTAAACCAACATGAAAATCACTTTTTCTTATATTATCGAACAGGTTCTATTCATTTCTTTTAGCGCATTCAAAAAACTGATCGGCATTATTTTTATTCGATAATTTTTTAGTTTCAGAAAACACATTTTCAtt                                                   >  1:2034441/1‑140 (MQ=255)                                                                                    ggCTTAAGTAAACCAACATGAAAATCACTTTTTCTTATATTATCGAAAAGGTTCTATTCATTTCTTTTAGCGCATTCAAAAAACTGATCGGCATTATTTTTATTCGATAATTTTTTAGTTTCAGAAAACACATTTTCAtt                                                   >  1:4268403/1‑140 (MQ=255)                                                                                    ggCTTAAGTAAACCAACATGAAAATCACTTTTTCTTATATTATCGAAAAGGTTCTATTCATTTCTTTTAGCGCATTCAAAAAACTGATCGGCATTATTTTTATTCGATAATTTTTTAGTTTCAGAAAACACATTTTCAtt                                                   >  2:2372711/1‑140 (MQ=255)                                                                                      cTTAAGTAAACCAACATGAAAATCACTTTTTCTTATATTATCGAAAAGGTTCTATTCATTTCTTTTAGCGCATTCAAAAAACTGATCGGCATTATTTTTATTCGATAATTTTTTAGTTTCAGAAAACACATTTTCATTGt                                                 >  1:1019273/1‑140 (MQ=255)                                                                                         aaGTAAACCAACATGAAAATCACTTTTTCTTATCTTATCGAAAAGGTTCTATTCATTTCTTTTAGCGCATTCAAAAAACTGATCGGCATTATTTTTATTCGATAATTTTTTAGTTTCAGAAAACACATTTTCATTGtttt                                              >  1:4166009/1‑140 (MQ=255)                                                                                         aaGTAAACCAACATGAAAATCACTTTTTCTTATATTATCGAAAAGGTTCTATTCATTTCTTTTAGCGCATTCAAAAAACTGATCGGCATTATTTTTATTCGATAATTTTTTAGTTTCAGAAAACACATTTTCATTGtttt                                              >  1:1647366/1‑140 (MQ=255)                                                                                          actAAACCAACATGCACATCACTTTTTCTTATATTATCGAAAAGGTTCTATTCATTTCTTTTAGCGCATTCAAAAAACTGATCGGCATTATTTTTATTCGATAATTTTTTAGTTTCAGAAAACACATTTTCATTGTTTTc                                             <  2:2676999/138‑1 (MQ=255)                                                                                               aCCAACATGAAAATCACTTTTTCTTATATTATCGAAAAGGTTCTATTCATTTCTTTTAGCGCATTCAAAAAACTGATCGGCATTATTTTTATTCGATATTTTTTTAGTTTCAGAAAACAGAGTTTCATTGTTTTCCAgtt                                        >  2:2893072/1‑138 (MQ=255)                                                                                               aCCAACATGAAAATCACTTTTTCTTATATTATCGAAAAGGTTCTATTCATTTCTTTTAGCGCATTCAAAAAACTGATCGGCATTATTTTTATTCGATAATTTTTTAGTTTCAGAAAACACATTTTCATTGTTTTccgtct                                        >  2:2893059/1‑136 (MQ=255)                                                                                               aCCAACATGAAAATCACTTTTTCTTATATTATCGAAAAGGTTCTATTCATTTCTTTTAGCGCATTCAAAAAACTGATCGGCATTATTTTTATTCGATAATTTTTTAGTTTCAGAAAACACATTTTCATTGTTTTCCAGCt                                        >  2:262920/1‑140 (MQ=255)                                                                                               aCCAACATGAAAATCACTTTTTCTTATATTATCGAAAAGGTCCTATTCATTTCTTTTAGCGCATTCAAAAAACTGATCGGCATTATTTTTATTCGATAATTTTTTAGTTTCAGAAAACACATTTTCATTGTTTTCCAGCt                                        <  2:1443765/140‑1 (MQ=255)                                                                                                   aCATGAAAATCACTTTTTCTTATATTATCGAAAAGGTTCTATTCATTTCTTTTAGCGCATTCAAAAAACTGATCGGCATTATTTTTATTCGATAATTTTTTAGTTTCAGAAAACACATTTTCATTGTTTTCCAGCTTTAg                                    >  2:148885/1‑140 (MQ=255)                                                                                                    cATGAAAATCACTTTTTCTTATATTATCGAAAAGGTTCTATTCATTTCTTTTAGCGCATTCAAAAAACTGATCGGCATTATTTTTATTCGATAATTTTTTAGTTTCAGAAAACACATTTTCATTGTTTTCCAGCTTTAGt                                   >  1:2614235/1‑140 (MQ=255)                                                                                                    cATGAAAATCACTTTTTCTTATATTATCGAAAAGGTTCTATTCATTTCTTTTAGCGCATTCAAAAAACTGATCGGCATTATTTTTATTCGATAATTTTTTAGTTTCAGAAAACACATTTTCATTGTTTTCCAGCTTTAGt                                   >  2:804765/1‑140 (MQ=255)                                                                                                               cTTTTTCTTATATTATCGAAAAGGTTCTATTCATTTCTTTTAGCGCATTCAAAAAACTGATCGGCATTATTTTTATTCGATAATTTTTTAGTTTCAGAAAACACATTTTCATTGTTTTCCAGCTTTAGTTTAATGagaag                        <  1:1239757/140‑1 (MQ=255)                                                                                                                tttttCTTATATTATCGAAAAGGTTCTATTCATTTCTTTTAGCGCATTCAAAAAACTGATCGGCat                                                                                                 <  2:3924270/66‑1 (MQ=255)                                                                                                                tttttCTTATATTATCGAAAAGGTTCTATTCATTTCTTTTAGCGCATTCAAAAAACTGATCGGCat                                                                                                 <  2:3926417/66‑1 (MQ=255)                                                                                                                tttttCTTATATTATCGAAAAGGTTCTATTCATTTCTTTTAGCGCATTCAAAAAACTGATCGGCat                                                                                                 >  1:3926417/1‑66 (MQ=255)                                                                                                                tttttCTTATATTATCGAAAAGGTTCTATTCATTTCTTTTAGCGCATTCAAAAAACTGATCGGCat                                                                                                 >  1:3924270/1‑66 (MQ=255)                                                                                                                 ttttCTTATATTATCGAAAAGGTTCTATTCATTTCTTTTAGCTCATTCAAAAAACTGATCGGCATTATTTTTATTCGATAATTTTTTAGTTTCAGAAAACACATTTTCATTGTTTTCCAGCTTTAGTTTAATGAGAAGAt                      <  1:2528613/140‑1 (MQ=255)                                                                                                                 ttttCTTATATTATCGAAAAGGTTCTATTCATTTCTTTTAGCGCATTCAAAAAACTGATCGGCATTATTTTTATTCGATAATTTTTTAGTTTCAGAAAACACATTTTCATTGTTTTCCAGCTTTAGTTTAATGAGAAGAt                      <  1:444353/140‑1 (MQ=255)                                                                                                                     cTTATATTATCGAAAAGGTTCTATTCATTTCTTTTAGCGCATTCAAAAAACTGATCGGCATTATTTTTATTCGATAATTTTTTAGTTTCAGAAAACACATTTTCATTGTTTTCCAGCTTTAGTTTAATGAGAAGATTTTc                  <  2:4268403/140‑1 (MQ=255)                                                                                                                      ttATATTATCGAAAAGGTTCTATTCATTTCTTTTAGCGCATTCAAAAAACTGATCGGCATTATTTTTATTCGATAATTTTTTAGTTTCAGAAAACACATTTTCATTGTTTTCCAGCTTTAGTTTAATGAGAAGATTTTcc                 <  2:288586/140‑1 (MQ=255)                                                                                                                              tCGAAAAGGTTCTATTCATTTCTTTTAGCGCATTCAAAAAACTGATCGGCATTATTTTTATTCGATAATTTTTTAGTTTCAGAAAACACATTTTCATTGTTTTCCAGCTTTAGTTTGATGAGAAGATTTTCCCAGACCtg         >  2:3409662/1‑140 (MQ=255)                                                                                                                              tCGAAAAGGTTCTATTCATTTCTTTTAGCGCATTCAAAAAACTGATCGGCATTATTTTTATTCGATAATTTTTTAGTTTCAGAAAACACATTTTCATTGTTTTCCAGCTTTAGTTTAATGAGAAGATTTTCCCAGACCtg         <  2:204715/140‑1 (MQ=255)                                                                                                                               cGAAAAGGTTCTATTCATTTCTTTTAGCGCATTCAAAAAACTGATCGGCATTATTTTTATTCGATAATTTTTTAGTTTCAGAAAACACATTTTCATTGTTTTCCAGCTTTAGTTTAATGAGAAGATTTTCCCAGACCtgc        <  1:148885/140‑1 (MQ=255)                                                                                                                                gAAAAGGATCTATTCATTTCTTTTAGCGCATTCAAAAAACTGATCGGCATTATTTTTATTCGATAATTTTTTAGTTTCAGAAAACACATTTTCATTGTTTTCCAGCTTTAGTTTAATGAGAAGATTTTCCCAGACCtgct       >  2:2799014/1‑140 (MQ=255)                                                                                                                                   aaGGTTCTATTCATTTCTTTTAGCGCATTCAAAAAACTGATCGGCATTATTTTTATTCGATAATTTTTTAGTTTCAGAAAACACATTTTCATTGTTTTCCAGCTTTAGTTTAATGAGAAGATTTTCCCAGACCtgcttgc    <  1:4643963/140‑1 (MQ=255)                                                                                                                                     ggTTCTATTCATTTCTTTTAGCGCATTCAAAAAACTGATCGGCATTATTTTTATTCGATAATTTTTTAGTTTCAGAAAACACATTTTCATTGTTTTCCAGCTTTAGTTTAATGAGAAGATTTTCCCAGACCTgcttgctt  <  1:1312123/140‑1 (MQ=255)                                                                                                                                         |                                                                                                                                        CATCTATTTTGTTTTCATATGAATTACGTGATTCCATACAGACATTTGGCGGCGTTTCTAAAATAACACTACGCGTACTACTTGGCTTAAGTAAACCAACATGAAAATCACTTTTTCTTATATTATCGAAAAGGTTTTATTCATTTCTTTTAGCGCATTCAAAAAACTGATCGGCATTATTTTTATTCGATAATTTTTTAGTTTCAGAAAACACATTTTCATTGTTTTCCAGCTTTAGTTTAATGAGAAGATTTTCCCAGACCTGCTTGCTT  >  NZ_CP025268/2788415‑2788686

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑