| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP025268 | 2,869,477 | A→C | I128S (ATC→AGC) | rpoS ← | RNA polymerase sigma factor RpoS |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP025268 | 2,869,477 | 0 | A | C | 99.7% | 1078.5 / NA | 324 | I128S (ATC→AGC) | rpoS | RNA polymerase sigma factor RpoS |
| Reads supporting (aligned to +/- strand): ref base A (0/0); major base C (176/147); minor base T (0/1); total (176/148) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.57e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 324 total aligned reads displayed.
TTTACGATGTGAATCGGCAAACGAATAGTACGGGTTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGGATCAGCCCCAGGTTGCCCTCTTCGATAAGGTCCAGCAACGCCAGACCACGATTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGC > NZ_CP025268/2869342‑2869613 | tttACGATGTGAATCGGCAAACGAATAGTACGGGTTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGGCTCAg > 1:3008664/1‑140 (MQ=255) ttACGATGTGAATCGGCAAACGAATAGTACGGGTTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGGCTCAGc > 1:612024/1‑140 (MQ=255) tACGATGTGAATCGGCAAACGAATAGTACGGGTTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGGCTCAGcc < 1:708948/140‑1 (MQ=255) tgtgAATCGGCAAACGAATAGTACGGGTTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGGCTCAGCCCCAgg < 1:3830508/140‑1 (MQ=255) tgAATCGGCAAACGAATAGTACGGGTTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGGCTCAGCCCCAGGtt > 1:4577055/1‑140 (MQ=255) gAATCGTCAAACGAATAGTACGGGGTTTGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGGAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGGCTCAGCCCCAGGTTg < 2:2981071/140‑1 (MQ=255) gAATCGGCAAACGAATAGTACGGGTTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGGCTCAGCCCCAGGTTg > 2:1448032/1‑140 (MQ=255) aaTCGGCAAACGAATAGTACGGGTTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGGCTCAGCCCCAGGTTGc > 2:2809541/1‑140 (MQ=255) aTCGGCAAACGAATAGTACGGGTTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGGCTCAGCCCCAGGTTGcc < 1:2238709/140‑1 (MQ=255) aTCGGCAAACGAATAGTACGGGTTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGGCTCAGCCCCAGGTTGcc < 1:2998786/140‑1 (MQ=255) cGGCAAACGAATAGTACGGGTTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGGCTCAGCCCCAGGTTGCCct < 1:4193000/140‑1 (MQ=255) cagaCGAATAGTACGGGTTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGGCTCAGCCCCAGGTTGCCCTCtt > 1:1737984/4‑140 (MQ=255) cAAACGAATAGTACGGGTTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGGCTCAGCCCCAGGTTGCCCTCtt > 2:110557/1‑140 (MQ=255) cAAACGAATAGTACGGGTTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGGCTCAGCCCCAGGTTGCCCTCtt < 2:311716/140‑1 (MQ=255) cAAACGAATAGTACGGGTTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGGCTCAGCCCCAGGTTGCCCTCtt > 2:4328961/1‑140 (MQ=255) aCGAATAGTACGGGTTTTGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGGCTCAGCCCCAGGTTGCCCTCTTCGa < 2:796082/140‑1 (MQ=255) aCGAATAGTACGGGTTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGGCTCAGCCCCAGGTTGCCCTCTTCGa < 1:3226888/140‑1 (MQ=255) taaTAGTCCGGGTTTGGTTCATATTCGCCCGTTCAATCGTCTCGCGAATCCACCATGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGGCTCAGCCCCAGGTTGCCCTCTTCGATa < 2:2624668/139‑1 (MQ=255) gAATAGTACGTCTCTGGTTCACAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGGCTCAGCCCCAGGTTGCCCTCTTCGATa < 2:1815915/140‑1 (MQ=255) gAATAGTACGGGTTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGGCTCAGCCCCAGGTTGCCCTCTTCGATa < 2:4625593/140‑1 (MQ=255) gAATAGTACGGGTTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGGCTCAGCCCCAGGTTGCCCTCTTCGATa < 2:1618425/140‑1 (MQ=255) gAATAGTACGGGTTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGGCTCAGCCCCAGGTTGCCCTCTTCGATa < 1:194285/140‑1 (MQ=255) gAATAGTACGGGTTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGGCTCAGCCCCAGGTTGCCCTCTTCGATa < 2:2126835/140‑1 (MQ=255) gAATAGTACGGGTTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGGCTCAGCCCCAGGTTGCCCTCTTCGATa < 1:4444661/140‑1 (MQ=255) gAATAGTACGGGTTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGGCTCAGCCCCAGGTTGCCCTCTTCGATa < 1:2720329/140‑1 (MQ=255) gAATAGTACGGGTTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGGCTCAGCCCCAGGTTGCCCTCTTCGATa < 1:3370914/140‑1 (MQ=255) caagaGTACGGGTTTGTTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGGCTCAGCCCCAGGTTGCCCTCTTCGATa < 2:4353531/136‑1 (MQ=255) aTAGTACGGGTTTGGTTCATAATCGGCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGGCTCAGCCCCAGGTTGCCCTCTTCGATAAg > 2:4572280/1‑140 (MQ=255) ggTACGGGTTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGAGGAAACCACGTGCCGGGTCAAACTTCCCTACCCCGCGGCTCAGCCCCAGGTTGCCCTCTTCGATAAGGt < 2:2902308/139‑1 (MQ=255) aGTACGGGTTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGATAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGGCTCAGCCCCAGGTTGCCCTCTTCGATAAGGt < 1:282225/140‑1 (MQ=255) gTTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGGCTCAGCCCCAGGTTGCCCTCTTCGATAAGGTCCAGCaa > 1:241574/1‑140 (MQ=255) gTTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGGCTCAGCCCCAGGTTGCCCTCTTCGATAAGGTCCAGCaa < 2:2372004/140‑1 (MQ=255) gTTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGGCTCAGCCCCAGGTTGCCCGCTTCGATAAGGTCCAGCaa > 2:4994438/1‑140 (MQ=255) ttGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGGCTCAGCCCCAGGTTGCCCTCTTCGATAAGGTCCAGCAACg > 2:2473690/1‑140 (MQ=255) tGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGGCTCAGCCCCAGGTTGCCCTCTTCGATAAGGTCCAGCAACGc > 1:663374/1‑140 (MQ=255) tGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGGCTCAGCCCCAGGTTGCCCTCTTCGATAAGGTCCAGCAACGc < 2:3509637/140‑1 (MQ=255) gTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGGCTCAGCCCCAGGTTGCCCTCTTCGATAAGGTCCAGCAACGCCa > 1:3393597/1‑140 (MQ=255) tAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGGCTCAGCCCCAGGTTGCCCTCTTCGATAAGGTCCAGCAACGCCAGACCa > 1:4376551/1‑140 (MQ=255) tAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGGCTCAGCCCCAGGTTGCCCTCTTCGATAAGGTCCAGCAACGCCAGACCa > 2:1872646/1‑140 (MQ=255) tCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGGCTCAGCCCCAGGTTGCCCTCTTCGATAAGGTCCAGCAACGCCAGACCACGa > 1:4858607/1‑140 (MQ=255) cGCCCGTTCAATCTTCTGCCGAACCCACCACGTTGCCAATGTTCCCAAGCCGAAACCCCCTCCCGCCCCTAACTTCTCTACCTCGCGCCTCCCTTCGTCCTCGCTTTCTACGATAAGGTCCAGCAACGCCAGCCTACgcc < 2:4306468/140‑3 (MQ=255) cGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGGCTCAGCCCCAGGTTGCCCTCTTCGATAAGGTCCAGCAACGCCAGACCACGAt < 2:2718837/140‑1 (MQ=255) cGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGGCTCAGCCCCAGGTTGCCCTCTTCGATAAGGTCCAGCAACGCCAGACCACGAt < 1:186074/140‑1 (MQ=255) cccGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGGCTCAGCCCCAGGTTGCCCTCTTCGATAAGGTCCAGCAACGCCAGACCACGATTg > 1:4766543/1‑140 (MQ=255) gTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGGCTCAGCCCCAGGTTGCCCTCTTCGATAAGGTCCAGCAACGCCAGACCACGATTGCCa > 2:4177603/1‑140 (MQ=255) ttCAATCTTCTGGCGAATCCACCAGGTTGCGTATGTTGAGGAGCGGCAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGGCTCAGCCCCAGGGTGCCCTCTTCGATAAGGGCCAGCAACACCAGACCATGATTGCCAt > 2:1119814/1‑140 (MQ=255) ttCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGGCTCAGCCCCAGGTTGCCCTCTTCGATAAGGTCCAGCAACGCCAGACCACGATTGCCAt > 2:4082703/1‑140 (MQ=255) ttCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGGCTCAGCCCCAGGTTGCCCTCTTCGATAAGGTCCAGCAACGCCAGACCACGATTGCCAt > 2:723110/1‑140 (MQ=255) tGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGGCTCAGCCCCAGGTTGCCCTCTTCGATAAGGTCCGGCAACGCCAGACCACGGTTGCCATAACTGCGGGc > 2:4471920/1‑140 (MQ=255) tGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGGCTCAGCCCCAGGTTGCCCTCTTCGATAAGGTCCAGCAACGCCAGACCACGATTGCCATAACGGCGGGc > 1:2336856/1‑140 (MQ=255) tCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGGCTCAGCCCCAGGTTGCCCTCTTCGATAAGGTCCAGCAACGCCAGACCACGATTGCCATAACGGCGGGCAAttttt < 2:4501181/140‑1 (MQ=255) tCCACCACGTTGCGTATGTTGAGAAGCGGCAACCACGTTCCGGGGCCAACTTCTCTACCGCGCGGCTCAGCCCCAGGTTGCCCTCTTCGATCAGGTCCAGCAACGCCAGACCACGATTGCCCTAACCGCGGGCACtcttt > 2:2287939/1‑140 (MQ=255) gTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGGCTCAGCCCCAGGTTGCCCTCTTCGATAAGGTCCAGCAACGCCAGACCACGATTGCCATAACGGCGGGCAATTTTTACCACCAg > 2:3925868/1‑140 (MQ=255) tGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGGCTCAGCCCCAGGTTGCCCTCTTCGATAAGGTCCAGCAACGCCAGACCACGATTGCCATAACGGCGGGCAATTTTTACCACCAGAc < 1:3536052/140‑1 (MQ=255) tGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGGCTCAGCCCCAGGTTGCCCTCTTCGATAAGGTCCAGCAACGCCAGACCACGATTGCCATAACGGCGGGCAATTTTTACCACCAGAc > 1:3246325/1‑140 (MQ=255) gCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTCCCGCGCGGCTCAGCCCCAGGTTGCCCTCTTCGATAAGGTCCAGCAACGCCAGACCACGATTGCCATAACGGCGGGCAATTTTTACCACCAGACg < 1:1090925/140‑1 (MQ=255) cGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGGCTCAGCCCCAGGTTGCCCTCTTCGATAAGGTCCAGCAACGCCAGACCACGATTGCCATAACGGCGGGCAATTTTTACCACCAGACGc > 1:342730/1‑140 (MQ=255) cGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGGCTCAGCCCCAGGTTGCCCTCTTCGATAAGGTCCAGCAACGCCAGACCACGATTGCCATAACGGCGGGCAATTTTTACCACCAGACGc > 1:3091907/1‑140 (MQ=255) aTGTTGGGGAGCGGAAACCACTTTCCGGGTCAAACTTCTCTGTCTCGCGGTTGAGCCTCTGATTGCCTGCTTTGATAATGTGCCTCAACTACAGACGGCGATTGCCATTACTGCATGCAATTATTACCACCAGACGCAAg < 2:1060716/140‑1 (MQ=255) aTGTTGAGGGCCGGGAGCCAGGTTCCGGGTCAAAGTTCTGTACCGCGCGGCTCAGCGCCAGGTTGCCCTCTGCGATAAGGTCCAGCAACGCCAGGCCACGATTGCCATAACGCCGGGCAAGTTTTACCGCCAGCCGCagg < 2:3753725/140‑3 (MQ=255) gTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGGCTCAGCCCCAGGTTGCCCTCTTCGATAAGGTCCAGCAACGCCAGACCACGATTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGtt > 1:4215163/1‑140 (MQ=255) ttGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGGCTCAGCCCCAGGTTGCCCTCTTCGATAAGGTCCAGCAACGCCAGACCACGATTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTa < 1:2809541/140‑1 (MQ=255) tGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGGCTCAGCCCCAGGTTGCCCTCTTCGATAAGGTCCAGCAACGCCAGACCACGATTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTAc > 2:597350/1‑140 (MQ=255) gaAGCGGAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGGCTCAGCCCCAGGTTGCCCTCTTCGATAAGGTCCAGCAACGCCAGACCACGATTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTActct > 2:3003430/1‑140 (MQ=255) gaAGCGGAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGGCTCAGCCCCAGGTTGCCCTCTTCGATAAGGTCCAGCAACGCCAGACCACGATTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTActct > 1:4073967/1‑140 (MQ=255) cGGAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGGCTCAGCCCCAGGTTGCCCTCTTCGATAAGGTCCAGCAACGCCAGACCACGATTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGat > 1:4708071/1‑140 (MQ=255) cGGAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGGCTCAGCCCCAGGTTGCCCTCTTCGATAAGGTCCAGCAACGCCAGACCACGATTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGat > 2:1995632/1‑140 (MQ=255) gAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGGCTCAGCCCCAGGTTGCCCTCTTCGATAAGGTCCAGCAACGCCAGACCACGATTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGatca > 1:4512139/1‑140 (MQ=255) aaaCCACGTTCCGGGTCAAACTTCTCTACCGCGCGGCTCAGCCCCAGGTTGCCCTCTTCGATAAGGTCCAGCAACGCCAGACCACGATTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGatcat < 1:3886514/140‑1 (MQ=255) aaaCCACGTTCCGGGTCAAACTTCTCTACCGCGCGGCTCAGCCCCAGGTTGCCCTCTTCGATAAGGTCCAGCAACGCCAGACCACGATTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGatcat < 1:9756/140‑1 (MQ=255) gggTCAAACTTCTCTACCGCGCGGCTCAGCCCCAGGTTGCCCTCTTCGATAAGGTCCAGCAACGCCAGACCACGATTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCgaga < 2:4041597/140‑1 (MQ=255) gggTCAAACTTCTCTACCGCGCGGCTCAGCCCCAGGTTGCCCTCTTCGATAAGGTCCAGCAACGCCAGACCACGATTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCgaga < 2:125061/140‑1 (MQ=255) aaaCTTCTCTACCGCGCGGCTCAGCCCCAGGTTGCCCTCTTCGATAAGGTCCAGCAACGCCAGACCACGATTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGa < 2:1095214/140‑1 (MQ=255) aaaCTTCTCTACCGCGCGGCTCAGCCCCAGGTTGCCCTCTTCGATAAGGTCCAGCAACGCCAGACCACGATTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGa < 1:1361478/140‑1 (MQ=255) aaaCTTCTCTACCGCGCGGCTCAGCCCCAGGTTGCCCTCTTCGATAAGGTCCAGCAACGCCAGACCACGATTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGa < 2:3393597/140‑1 (MQ=255) aaaCTTCTCTACCGCGCGGCTCAGCCCCAGGTTGCCCTCTTCGATAAGGTCCAGCAACGCCAGACCACGATTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGa < 1:4641636/140‑1 (MQ=255) aaaCTTCTCTACCGCGCGGCTCAGCCCCAGGTTGCCCTCTTCGATAAGGTCCAGCAACGCCAGACCACGATTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGa < 1:497009/140‑1 (MQ=255) aaaCTTCTCTACCGAGCGGCTCAGACCCAAGTTCCCCTCTTCGATAAAGTCCAGCAACGCCAGACCACGATTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGa < 1:3021279/140‑1 (MQ=255) ccctctcTACCGCGCGGCTCAGCCCCAGGTTGCCCTCTTCGATAAGGTCCCGCAACGCCAGACCACGATTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACa < 1:3891434/137‑1 (MQ=255) ccTTCTCTACCGCGCGGCTCAGCCCCAGGTTGCCCTCTTCGATAAGGTCCAGCAACGCCAGACCACGCTTGCCATAACGGCGGGCAATTTTTACCAACAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACa < 2:4656025/139‑1 (MQ=255) aCTTCTCTACCGCGCGGCTCAGCCCCAGGTTGCCCTCTTCGATAAGGTCCAGCAACGCCAGACCACGATTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACa < 2:1625349/140‑1 (MQ=255) aCTTCTCTACCGCGCGGCTCAGCCCCAGGTTGCCCTCTTCGATAAGGTCCAGCAACGCCAGACCACGATTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACa < 1:1519350/140‑1 (MQ=255) aCTTCTCTACCGCGCGGCTCAGCCCCAGGTTGCCCTCTTCGATAAGGTCCAGCAACGCCAGACCACGATTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACa > 1:1523906/1‑140 (MQ=255) tctACCGCGCGGCTCAGCCCCAGGTTGCCCTCTTCGATAAGGTCCAGCAACGCCAGACCACGATTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCGcc > 2:3236706/1‑140 (MQ=255) tctACCGCGCGGCTCAGCCCCAGGTTGCCCTCTTCGATAAGGTCCAGCAACGCCAGACCACGATTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGACAGGCGACATCTcc < 2:3692032/140‑1 (MQ=255) aCCGCGCGGCTCAGCCCCAGGTTGCCCTCTTCGATAAGGTCCAGCAACGCCAGACCACGATTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACg < 1:1009589/140‑1 (MQ=255) aCCGCGCGGCTCAGCCCCAGGTTGCCCTCTTCGATAAGGTCCAGCAACGCCAGACCACGATTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACg < 1:1196339/140‑1 (MQ=255) aCCGCGCGGCTCAGCCCCAGGTTGCCCTCTTCGATAAGGTCCAGCAACGCCAGACCACGATTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACg < 2:1977477/140‑1 (MQ=255) aCCGCGCGGCTCAGCCCCAGGTTGCCCTCTTCGATAAGGTCCAGCAACGCCAGACCACGATTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACg < 1:1996446/140‑1 (MQ=255) ccGCGCGGCTCAGCCCCAGGTTGCCCTCTTCGATAAGGTCCAGCAACGCCAGACCACGATTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGc < 1:1099808/140‑1 (MQ=255) ccGCGCGGCTCAGCCCCAGGTTGCCCTCTTCCATAAGGTCCAGCAACGCCAGACCACGATTGCCATAACGGCGGGCAAGTTTCACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGCGGCGACATCTCCACGc < 2:4909593/140‑1 (MQ=255) cgcgcgGCTCAGCCCCAGGTTGCCCTCTTCGATAAGGTCCAGCAACGCCAGACCACGATTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCa > 1:801977/1‑140 (MQ=255) cgcgGCTCAGCCCCAGGTTGCCCTCTTCGATAAGGTCCAGCAACGCCAGACCACGATTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGTCGGCGAGAGGCGACATCTCCACGCAGt > 1:2891077/1‑140 (MQ=255) cgcgGCTCAGCCCCAGGTTGCCCTCTTCGATAAGGTCCAGCAACGCCAGACCACGATTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCTAGAGGCGACATCTCCACGCAGt > 1:2770695/1‑140 (MQ=255) cgcgGCTCAGCCCCAGGTTGCCCTCTTCGATAAGGTCCAGCAACGCCAGACCACGATTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGt > 1:2413489/1‑140 (MQ=255) cgcgGCTCAGCCCCAGGTTGCCCTCTTCGATAAGGTCCAGCAACGCCAGACCACGATTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGt > 2:306499/1‑140 (MQ=255) cgcgGCTCAGCCCCAGGTTGCCCTCTTCGATAAGGTCCAGCAACGCCAGACCACGATTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGCCGAGAGGCGACATCTCCACGCAgg > 2:478318/1‑139 (MQ=255) cgcgGCTCAGCCCCAGGTTGCCCTCTTCGATAAGGTCCAGCAACGCCAGACCACGATTGCCATAACGGCGGGCAATGTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGt > 2:3307997/1‑140 (MQ=255) cgcgGCTCAGCCCCAGGTTGCCCTCTTCGATAAGGGCCAGCAACGCCAGACCACGATTGCCATCACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCCCGCTCATCCGGCGGCGAGAGGGGACATTTCCACGCAGt > 2:3172201/1‑140 (MQ=255) cgGCTCAGCCCCAGGTTGCCCTCTTCGATAAGGTCCAGCAACGCCAGACCACGATGGCCATAACGGCGGGCAATTGTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTgc > 1:1652423/1‑140 (MQ=255) | TTTACGATGTGAATCGGCAAACGAATAGTACGGGTTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGGATCAGCCCCAGGTTGCCCTCTTCGATAAGGTCCAGCAACGCCAGACCACGATTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGC > NZ_CP025268/2869342‑2869613 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |