| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP025268 | 3,864,419 | T→C | pseudogene (1103/1613 nt) | CXP41_RS20140 ← | PTS sugar transporter subunit IIB |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP025268 | 3,864,419 | 0 | T | C | 99.7% | 1121.8 / NA | 333 | pseudogene (1103/1613 nt) | CXP41_RS20140 | PTS sugar transporter subunit IIB |
| Reads supporting (aligned to +/- strand): ref base T (0/0); major base C (180/152); minor base G (0/1); total (180/153) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.59e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 333 total aligned reads displayed.
TGCACATGTTGAACTGCAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTCAATCAGACCT‑CCG‑C‑C‑ATGTT‑‑‑C‑ACCAC‑‑‑ACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGG > NZ_CP025268/3864283‑3864546 | tGCACATGTTGAACTGCAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCGGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAg < 1:1853064/140‑1 (MQ=255) cacaTGTTGAACTGCAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTc > 1:2895237/1‑140 (MQ=255) aTGTTGAACTGCAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAAt < 1:1206405/140‑1 (MQ=255) gTTGAACTGCAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCa > 2:3333186/1‑140 (MQ=255) cTGCAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑c < 1:2442693/140‑1 (MQ=255) gCAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCg < 1:4064588/140‑1 (MQ=255) cAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCG‑c > 1:931020/1‑140 (MQ=255) cAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCG‑c > 2:4419140/1‑140 (MQ=255) cAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCG‑c > 1:1641703/1‑140 (MQ=255) cAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCG‑c < 1:4378748/140‑1 (MQ=255) cAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCG‑c > 1:1118713/1‑140 (MQ=255) aGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCG‑c < 2:4683815/139‑1 (MQ=255) gAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCG‑c‑cc < 1:4889008/140‑2 (MQ=255) tCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCG‑c‑ccatg < 1:2052865/140‑5 (MQ=255) gtgtGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTg < 1:4421855‑M1/140‑2 (MQ=255) gtgCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcc < 1:4629163‑M1/140‑4 (MQ=255) gtgCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcc > 1:2810034‑M1/1‑137 (MQ=255) gCGGAAAACCACGAAGTACAGCAGGGTAAAGCACACCCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGCATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgccca < 1:484007‑M1/140‑6 (MQ=255) gCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgccca < 1:3965568‑M1/140‑6 (MQ=255) cGGAAAACCACGAAGTACAGCAGGGTACAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccac > 1:2417683‑M1/1‑134 (MQ=255) cGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccac < 1:4344336‑M1/140‑7 (MQ=255) cGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccac < 2:4576889‑M1/140‑7 (MQ=255) cGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccac > 2:1193382‑M1/1‑134 (MQ=255) cGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTg > 1:4396933‑M1/1‑134 (MQ=255) ggAAAACCACGACGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccacc < 2:3593065‑M1/140‑8 (MQ=255) ggAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccacc < 1:383915‑M1/140‑8 (MQ=255) gAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccacca < 2:1829330‑M1/140‑9 (MQ=255) aaCCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacac < 1:1403267‑M1/140‑12 (MQ=255) aCCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacacc < 1:5006469‑M1/140‑13 (MQ=255) ccACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacacca < 1:655938‑M1/140‑14 (MQ=255) cACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaa > 2:3304716‑M1/1‑126 (MQ=255) tcgAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTAGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaa < 2:923964‑M1/139‑16 (MQ=255) cGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaag < 2:5056649‑M1/140‑17 (MQ=255) cGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAATTTTGCGGTAAAACCTAGTCAATCAGACAT‑CCGCC‑C‑ATGTTgcccaccacaccaaaa > 2:3833607‑M1/1‑124 (MQ=255) aGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagaga < 1:2066167‑M1/140‑20 (MQ=255) cagcagGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagataca < 2:4964595‑M1/140‑24 (MQ=255) agcagGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAg > 2:4883101/1‑93 (MQ=255) gcagGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacatt < 1:1043915‑M1/140‑26 (MQ=255) ggTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAGACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacgg > 1:4232383‑M1/1‑111 (MQ=255) ggTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCTGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacgg > 1:2735300‑M1/1‑111 (MQ=255) ggTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacgg > 2:157082‑M1/1‑111 (MQ=255) ggTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacgg > 1:2546361‑M1/1‑111 (MQ=255) tAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtc > 2:2294095‑M1/1‑109 (MQ=255) tAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtc > 1:5083588‑M1/1‑109 (MQ=255) tAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtc > 1:4565503‑M1/1‑109 (MQ=255) tAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagag > 2:2008187‑M1/1‑109 (MQ=255) tAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CAGCC‑C‑ATGTTgcccaccacatcaaagagatacattacggtc > 2:4205878‑M1/1‑109 (MQ=255) tAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCCAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtc > 2:4332280‑M1/1‑109 (MQ=255) aGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgac > 1:1549857‑M1/1‑106 (MQ=255) cacaACCCATTGGCGATTTGGGTCAGCATCATAACCGCGTGGATGCTGAACATCGGGATCCGGTATTGCGGTAAAACCTAGTCAATCAGACAT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacattaaggtcgacat > 2:739990‑M1/1‑104 (MQ=255) acaACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTCAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacatt < 2:2948833‑M1/140‑38 (MQ=255) aaCCGAATGGCGATTTGGGTCAGCATCATATCCGCGGGGGTGCTGAACATCAGGGTCCAGTTTTGCGGTAAAACCTAGTCCATCAGAGCT‑CCG‑CGC‑ATGTTGG‑CGACCAC‑‑‑ACCAAAGAGGTACATTGCCGTCGCCATTgt > 2:2808611/1‑139 (MQ=255) aaCCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattga > 1:2263015‑M1/1‑101 (MQ=255) aaCCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattga > 2:2160935‑M1/1‑101 (MQ=255) aCCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgag < 1:1689273‑M1/140‑41 (MQ=255) aCCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgag < 2:1906042‑M1/140‑41 (MQ=255) cccAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑c > 2:1744909/1‑89 (MQ=255) cccAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgagg > 1:1323958‑M1/1‑99 (MQ=255) aaTGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccg > 2:3486840‑M1/1‑96 (MQ=255) tGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgcc > 1:3345754‑M1/1‑94 (MQ=255) cGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagc < 1:2134086‑M1/140‑50 (MQ=255) cGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagc < 1:4419140‑M1/140‑50 (MQ=255) cGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagc < 1:2651642‑M1/140‑50 (MQ=255) cGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagc < 1:1234589‑M1/140‑50 (MQ=255) cGATTTGGGTCAGCATCATATACGCGTGGTTGCTGAACATCGGGATCCATTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagc < 2:557612‑M1/140‑50 (MQ=255) cGATTTGGGTCAGCACCATATCCGAGTTGGTGCGTAACATCGTGATCCAGTTTTGCAGTAAAACCGAGTCAATCAGACTTCCCC‑C‑C‑ATGTTGCCC‑ACAAC‑‑‑ACCAAATACATACATTACCGTCGACATTGAGGCCGCCAGc < 2:3087249/140‑1 (MQ=255) gATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagca < 1:3484440‑M1/140‑51 (MQ=255) aTTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcac > 1:3715871‑M1/1‑89 (MQ=255) tGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggc < 1:2990122‑M1/140‑55 (MQ=255) tCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgt < 1:3441516‑M1/140‑59 (MQ=255) tcatATCCGCGTGGTTGCTAAACATCGGGATCCAGTTTTGCGGTAAAACCCAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgca < 2:3189666‑M1/140‑65 (MQ=255) ccGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagc > 1:41328‑M1/1‑70 (MQ=255) gcgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaa > 2:3669997‑M1/1‑68 (MQ=255) gcgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaa > 1:4698745‑M1/1‑68 (MQ=255) gcgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaa < 2:1323958‑M1/140‑73 (MQ=255) cgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaac > 2:1263050‑M1/1‑67 (MQ=255) cgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgggtaccgcaaacagcaac > 2:4389212‑M1/1‑67 (MQ=255) tGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggc > 1:1764499‑M1/1‑65 (MQ=255) gTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtg > 2:2689244‑M1/1‑63 (MQ=255) ttGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtga > 2:635311‑M1/1‑62 (MQ=255) tGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatg < 1:867472‑M1/140‑83 (MQ=255) aaCATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaa < 1:3669945‑M1/140‑85 (MQ=255) cATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaaca > 1:811067‑M1/1‑54 (MQ=255) tCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacattgcggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacagg > 1:713571‑M1/1‑52 (MQ=255) tCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacagg < 1:2291997‑M1/140‑89 (MQ=255) tCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacagg > 1:19414‑M1/1‑52 (MQ=255) tCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacagg > 1:5054600‑M1/1‑52 (MQ=255) tCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacagg > 1:1962050‑M1/1‑52 (MQ=255) ggATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacatcgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaag > 2:955651‑M1/1‑49 (MQ=255) gATCCAGTTTTGCGGTATAACCTAGTCAATCAGCCCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaagg < 2:4053533‑M1/140‑93 (MQ=255) tCCAGTTTTGCGGTAAAACCCAGTCACTCAGACCT‑CCG‑C‑CAATGTT‑‑‑C‑CCCACCCGACAAAAGAAATACATTACGGTCGACCTTGAGGCCGCCAGCATGGCGTGTACCGCAAACAGCCACGGTGAAATGAACAGGAAGGTa < 2:2419798/140‑1 (MQ=255) cAGTTTTGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagacacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagccacggtgaaatgaacaggaaggtaaa < 2:84566‑M1/140‑97 (MQ=255) tGCGGTACAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcactgcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccag < 2:3955979‑M1/140‑103 (MQ=255) tGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccag < 2:2895237‑M1/140‑103 (MQ=255) tGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccag > 1:3419025‑M1/1‑38 (MQ=255) tGCGGTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccag < 1:832254‑M1/140‑103 (MQ=255) ggTAAAACCTAGTCAATCAGCCCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcgg < 2:1077860‑M1/140‑106 (MQ=255) ggTAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcgg < 2:2549428‑M1/140‑106 (MQ=255) tAAAACCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcggtt > 1:3185123‑M1/1‑33 (MQ=255) aaaCCTAGTCAATCAGACCT‑CCGCC‑C‑ATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacagggaggtaaattccagcggttcg > 2:4075300‑M1/1‑31 (MQ=255) | TGCACATGTTGAACTGCAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTCAATCAGACCT‑CCG‑C‑C‑ATGTT‑‑‑C‑ACCAC‑‑‑ACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGG > NZ_CP025268/3864283‑3864546 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |