| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP025268 | 3,952,339 | A→G | *33* (TAA→TAG) | ilvL → | ilv operon leader peptide |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP025268 | 3,952,339 | 0 | A | G | 98.6% | 708.5 / NA | 218 | *33* (TAA→TAG) | ilvL | ilv operon leader peptide |
| Reads supporting (aligned to +/- strand): ref base A (0/0); major base G (186/29); minor base T (3/0); total (189/29) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 221 total aligned reads displayed.
TTAGGCATTCCTTCGAACAAGATGCAAGAAAAGACAAAATGACAGCCCTTCTACGAGTGATTAGCCTGGTCGTGATTA‑GCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAAAGATCAAGCCTTAACGAACTAAGA‑CCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGACGGGGAAC > NZ_CP025268/3952203‑3952473 | ggCATTCCTTCGAACAAGATGCAAGAAAAGACAAAATGACAGCCCTTCTACGAGTGATTAGCCTGGTCGTGATTA‑GCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCa > 2:217232/1‑140 (MQ=255) ttCCTTCGAACAAGATGCAAGAAAAGACAAAATGACAGCCCTTCTACGAGTGATTAGCCTGGTCGTGATTA‑GCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGcc > 1:96451/1‑140 (MQ=255) ttCCTTCGAACAAGATGCAAGAAAAGACAAAATGACAGCCCTTCTACGAGTGATTAGCCTGGTCGTGATTA‑GCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGcc > 2:2632307/1‑140 (MQ=255) ttCCTTCGAACAAGATGCAAGAAAAGACAAAATGACAGCCCTTCTACGAGTGATTAGCCTGGTCGTGATTA‑GCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGcc > 1:4814480/1‑140 (MQ=255) ttCCTTCGAACAAGATGCAAGAAAAGACAAAATGACAGCCCTTCTACGAGTGATTAGCCTGGTCGTGATTA‑GCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGcc > 2:3718571/1‑140 (MQ=255) ttCCTTCGAACAAGATGCAAGAAAAGACAAAATGACAGCCCTTCTACGAGTGATTAGCCTGGTCGTGATTA‑GCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGcc > 2:3718973/1‑140 (MQ=255) ttCCTTCGAACAAGATGCAAGAAAAGACAAAATGACAGCCCTTCTACGAGTGATTAGCCTGGTCGTGATTA‑GCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGcc > 2:3761528/1‑140 (MQ=255) ttCCTTCGAACAAGATGCAAGAAAAGACAAAATGACAGCACTTCTACGAGCGCTTAGCCTGGTCGTGATTA‑GCGTGGTGGTGCTTATTATCCCAACGTGAGGGGCTGCACTTGGACGAGGAAAGGCTTCGAGATCAAGcc > 2:648756/1‑140 (MQ=255) taccTTCGAAGAGGCTGGAAGAAAGGACAAAATGAAAGCCCTTCCACGAGTGATTAGCCTGCTC‑TGCCGACGCCTAGTGGGGAGTATAATCCCCCCGTGCGGGGGTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGcc > 2:3101563/3‑140 (MQ=255) tCCTTCGAACAAGATGCAAGAAAAGACAAAATGACAGCCCTTCTACGAGTGATTAGCCTGGTCGTGATTA‑GCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCt > 2:1627564/1‑140 (MQ=255) cTTCGAGCAAGCTGCAAGAAAAGACAAAATGACAGAAATTCTACGAGTGATTAGCCTGGTCGTAGTAA‑GCGTGGTCGTGATTATTAACCCACCGTGCGAGGCTACACTTCAACGAGGAAAGGCTTAGAGATCAAGCATTa < 2:74764/140‑1 (MQ=255) ttCGAACAAGATGCAAGAAAAGACAAAATGACAGCCCTTCTACGAGTGATTAGCCTGGTCGTGATTA‑GCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTaa > 1:4882090/1‑140 (MQ=255) cGAACAAGAGACAATAAAAGACAAAATGACAGCCCTTCTACGAGGGACTAGCATGGTCGTGATTA‑GCGTGGTGGTGATTATTATCCCACCGTCCGGGGCTGCACTTGGACGAGGAAAAGCTTAGAGATCAATCCTTAACg > 2:2835711/1‑140 (MQ=255) gAACAAGCTGCAAGAAAAGACAAAATGACAGCCCTTCTACGAGTGATTAGCCTGGTCGTGGTTA‑GCGTGGTGGTGATTAGTATCCCACCGGGGGGGGCTGCAATGGGACGAGGTACGGCTTAGAGATGAAGCCTTAACGa > 2:584157/1‑140 (MQ=255) aaCAAGATGCAAGAAAAGACAAAATGACAGCCCTTCTACGAGTGATTAGCCTGGTCGTGATTA‑GCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGaa > 1:4358262/1‑140 (MQ=255) gATGCAAGAAAAGACAAAATGACAGCCCTTCTACGAGTGATTAGCCTGGTCGTGATTA‑GCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAg > 1:591805/1‑140 (MQ=255) gATGCAAGAAAAGACAAAATGACAGCCCTTCTACGAGTGATTAGCCTGGTCGTGATTA‑GCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAg > 1:3253057/1‑140 (MQ=255) acacaCAAAATGACAGCCCTTCTACGAGTGATTAGCCTGGTCGTGATTA‑GCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCCCTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGA‑CCCCCGCa < 1:559554/136‑1 (MQ=255) aaTGACAGCCCTTCTACGAGTGATTAGCCTGGTCGTGATTA‑GCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGA‑CCCCCGCACCGAAAgg > 1:4057150/1‑140 (MQ=255) aCAGCCCTTCTACGAGTGATTAGCCTGGTCGTGATTA‑GCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCATTAACGAACTAAGA‑CCCCCGCACCGAAAGGTCCg > 2:4529563/1‑140 (MQ=255) aCAGCCCTTCTACGAGTGATTAGCCTGGTCGTGATTA‑GCGTGGTGGTGATGATTATCCCACCGTGCGGGGCTGCACTTGGATGAGTAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGA‑GCCCCGCACCGAAAGGGCCg > 2:4124890/1‑140 (MQ=255) cccTTCTACGAGTGATTAGCCTGGTCGTGATTA‑GCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGA‑CCCCCGCACCGAAAGGTCCggggg < 1:1809425/140‑1 (MQ=255) ccTTCTACGAGTGATTAGCCTGGTCGTGATTA‑GCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGA‑CCCCCGCACCGAAAGGTCCGGGGGt < 1:2705910/140‑1 (MQ=255) aGTGATTAGCCTGGTCGTGATTA‑GCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGA‑CCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTgt > 1:4506985/1‑139 (MQ=255) aGTGATTAGCCTGGTCGTGATTA‑GCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGA‑CCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGa > 2:2865966/1‑140 (MQ=255) gTGATTAGCCTGGTCGTGATTA‑GCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCGCCTGGACGAGGAAAGGCTTCGAGATGAAGCCTTAACGAACTAAGA‑CCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGAc > 2:1812477/1‑140 (MQ=255) tGATTAGCCTGGTCGTGATTA‑GCGTGGGGGTGTTTATTATCCCACCGTGGGTGGCTGCACTTGGTCGAGGAAAGTGTTTTAGATCAAGCCTTAGCGGAGTAAGA‑CGCACGCACCGAAAGGTCCGGGGGTTTTTTTTGAcc > 2:118092/1‑140 (MQ=255) gATTAGCCTGGTCGTGATTA‑GCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGA‑CCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCt > 2:3044048/1‑140 (MQ=255) gATTAGCCTGGTCGTGATTA‑GCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGA‑CCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCt > 1:1232361/1‑140 (MQ=255) gATTAGCCTGGTCGTGATTA‑GCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGA‑CCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCt > 1:3450793/1‑140 (MQ=255) aTTAGCCTGGTCGTGATTA‑GCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCTCTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGA‑CCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCtt > 2:4647149/1‑140 (MQ=255) aTTAGCCTGGTCGTGATTA‑GCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAGGCCTTAACGAACTAAGACCCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCt > 2:3940713/1‑140 (MQ=255) aTTAGCCTGGTCGTGATTA‑GCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGA‑CCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCtt > 2:1470037/1‑140 (MQ=255) aTTAGCCTGGTCGTGATTA‑GCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGA‑CCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCtt > 2:1750380/1‑140 (MQ=255) tAGCCTGGTCGTGATTA‑GCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGA‑CCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTaa > 1:69375/1‑140 (MQ=255) gCCTGGTCGTGATTA‑GCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGA‑CCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTaaaa > 1:1394832/1‑140 (MQ=255) gcTGGTCGTGATTA‑GCGTGGTGGTGATTATTATCCCACCGCGCGGGGCTGCAGTTGGACGAGGAAAGGCTGAGAGATCAAGCCTTAACGGACTAAGA‑CCCCCGCACGGATAGGTCCGGGGGGTTTTTGTGACCGTaaaaa > 2:4862750/2‑140 (MQ=255) tGGTCGTGATTA‑GCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGA‑CCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACa < 2:1135125/140‑1 (MQ=255) gTCGTGGATA‑GCCTGGTGGTGATGATTATCCCACCGTGCGGGGATGCACTTGGAAGAGGAAAGGCTTAGAGATCAAGCCTTAACGACCTAAGA‑CCCCCGCGCCGACAGGGCCGCGGGTTCTTTTTGACATTGAAAACATa > 2:2459035/1‑140 (MQ=255) gTCGTGCTTA‑GCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCCCTTGGACGAGGAAAGGCTTAGAGATCAAGCGTTAACGAACTAAGA‑CCCCCGCACCGAAAGGTCCGGGGGGGTTTTTTGACCTTAAAAACATa > 2:1231818/1‑140 (MQ=255) gTCGTGATTA‑GCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGA‑CCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTTACCTTAAAAACATa > 1:2454057/1‑140 (MQ=255) gTCGTGATTA‑GCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGA‑CCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATa > 1:167670/1‑140 (MQ=255) gTCGTGATTA‑GCGTGGTGGTGATTATGATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGCTCAAGCCTTAACGAACTAAGA‑CCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATa > 2:430746/1‑140 (MQ=255) tCGTGATTA‑GCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGA‑CCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATaa > 1:4181284/1‑140 (MQ=255) tCGTGATTA‑GCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGA‑CCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATaa > 1:2209630/1‑140 (MQ=255) gATTA‑GCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGA‑CCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCga > 1:4716291/1‑140 (MQ=255) gATTA‑GCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGA‑CCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCga > 1:1487753/1‑140 (MQ=255) aTTA‑GCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGA‑CCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCgag > 1:1991987/1‑140 (MQ=255) gCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGA‑CCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGc > 1:1967866/1‑140 (MQ=255) cGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGA‑CCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCa > 2:3332004/1‑140 (MQ=255) cGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGA‑CCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCa > 2:1064289/1‑140 (MQ=255) cGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGA‑CCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCa > 1:1581982/1‑140 (MQ=255) cGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGA‑CCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCa > 1:883438/1‑140 (MQ=255) tggtggtgATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGA‑CCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGa < 2:220013/140‑1 (MQ=255) tggtggtgATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGA‑CCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGa < 1:3976958/140‑1 (MQ=255) gtggtgATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGA‑CCCCCGCCCCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACa > 1:255297/1‑140 (MQ=255) gtggtgATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGA‑CCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACa > 2:1843813/1‑140 (MQ=255) tggtgATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGA‑CCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACaa > 1:3215337/1‑140 (MQ=255) gtgATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGA‑CCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATg > 1:3290073/1‑140 (MQ=255) attattATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGA‑CCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAAt > 1:1657741/1‑140 (MQ=255) attattATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGA‑CCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAAt > 1:3777722/1‑140 (MQ=255) tatCCCACCGTGCGGTGCTTCACTTGGACGAGGAAAGGCTTATAGATCAAGCCTTAACGAACTAAGA‑CCCCCGAACCGCAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATCAATaaacg > 2:4774471/1‑137 (MQ=255) tatCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGA‑CCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAg > 2:4075442/1‑140 (MQ=255) tatCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGA‑CCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAg > 2:4881650/1‑140 (MQ=255) tatccACCGTGCGGGGCTGCACTTGGACGAAGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGA‑CCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCGTAAAAACATAACCTAGGGGCAGACAATGAATAACAgg > 2:4734565/4‑139 (MQ=255) tCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGA‑CCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGca > 1:4336817/1‑140 (MQ=255) tCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGA‑CCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGca < 2:3215337/140‑1 (MQ=255) cACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGA‑GCCCCGCACCGAAAGGTCCGGGGGTATTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACCGCACaa > 2:1077601/1‑140 (MQ=255) cACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGA‑CCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACaa > 2:4954242/1‑140 (MQ=255) cACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGA‑CCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACaa > 1:1288947/1‑140 (MQ=255) cACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGA‑CCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACaa > 2:2241134/1‑140 (MQ=255) tcGTGCGGGGCTGCACTTGGAGGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGA‑TCCCCGGACCGAAAGGGCCGGGGGTTTTTTTTGACCTTAGAAACATATCCGTGGAGCAGACAAGGTATAACAACACaaaa > 2:4229241/2‑140 (MQ=255) ccGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGA‑CCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACaaaa > 1:393906/1‑140 (MQ=255) ccGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGA‑CCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACaaaa > 2:511709/1‑140 (MQ=255) ccGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGA‑CCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACaaaa > 1:2408458/1‑140 (MQ=255) ccGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGA‑CCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAACGAATAACAGCACaaaa > 1:3094555/1‑140 (MQ=255) gTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGA‑CCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAAtt > 1:759399/1‑140 (MQ=255) tGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGA‑CCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTc > 1:2145925/1‑140 (MQ=255) tGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGA‑CCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTc > 2:3448371/1‑140 (MQ=255) tGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGA‑CCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTc > 1:2146428/1‑140 (MQ=255) cGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGA‑CCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTg < 1:3598921/140‑1 (MQ=255) cGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGA‑CCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTg > 1:226454/1‑140 (MQ=255) cGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGA‑CCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTg > 2:3464344/1‑140 (MQ=255) cGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGA‑CCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAAAAACAGCCCAAAATTCTg > 2:2409051/1‑140 (MQ=255) tGCACTTGGACGAGGAAAGGCTTATAGATCAAGCATTGACGAGCTAAGA‑CCCCCGCACCGGAAGGTCCGGGGGTTTTTTTTGACCTTACAAACATAACCGAGGAGCAAACAAGGAATGCGAGCACCAAATTCTGTGtcgc > 2:1631176/1‑138 (MQ=255) tGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGA‑CCCCCGCACCGAAAGGTCCGGGGGTTCTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAAATCTGTTtctt > 2:3302391/1‑139 (MQ=255) cACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTaa > 2:172609/1‑37 (MQ=255) cACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTaa < 1:172609/37‑1 (MQ=255) cACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGA‑CCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCaa > 1:1049022/1‑140 (MQ=255) cACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGA‑CCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCaa > 2:3856419/1‑140 (MQ=255) cACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGA‑CCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCaa > 1:2243376/1‑140 (MQ=255) cACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGA‑CCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCaa > 2:3698759/1‑140 (MQ=255) cACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGA‑CCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCaa > 1:4959901/1‑140 (MQ=255) ggACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGA‑CCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGTTTc > 1:1188532/1‑140 (MQ=255) ggACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGA‑CCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTc > 1:1516/1‑140 (MQ=255) aGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGA‑CCCCCGCACCGAAAGGTCCGGGGGGTTTTTTTGACCTGAAAAACATAACCGAGGAGCAGACAATGAATACCAGCACAAAAATCTGTTTCTCAAGATGCAGGAc > 2:4829414/1‑140 (MQ=255) aaGGCTTAGAGATCAAGCCTTAACGAACTAAGC‑CCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGACgggg < 1:1010315/140‑1 (MQ=255) ggCTTAGAGATCAAGCCTTAACGACCTAAGA‑CCCCCGCACCGAAAGCTCCGGGGGTTTTTTTTGACCTTAAAAACATAACTGAGCAGCAGACAATGAACAACAGCACAAAATTCTGTTTCTCAAGATTCAGGACGGGGaa < 2:4535518/140‑1 (MQ=255) ggCTTAGAGATCAAGCCTTAACGAACTAAGC‑CCCCCGCACCGAAAGGTCAGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGACGGGGaa < 1:490874/140‑1 (MQ=255) gCTTAGAGATCAAGCCTTAACGAACTAAGA‑CCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGACGGGGaac < 1:671320/140‑1 (MQ=255) | TTAGGCATTCCTTCGAACAAGATGCAAGAAAAGACAAAATGACAGCCCTTCTACGAGTGATTAGCCTGGTCGTGATTA‑GCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAAAGATCAAGCCTTAACGAACTAAGA‑CCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGACGGGGAAC > NZ_CP025268/3952203‑3952473 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |