| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP025268 | 374,126 | A→G | intergenic (+194/‑384) | dmpG → / → mhpT | 4‑hydroxy‑2‑oxovalerate aldolase/3‑(3‑hydroxy‑phenyl)propionate transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP025268 | 374,126 | 0 | A | G | 98.5% | 399.4 / ‑2.3 | 205 | intergenic (+194/‑384) | dmpG/mhpT | 4‑hydroxy‑2‑oxovalerate aldolase/3‑(3‑hydroxy‑phenyl)propionate transporter |
| Reads supporting (aligned to +/- strand): ref base A (0/3); new base G (88/110); total (89/116) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.58e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 208 total aligned reads displayed.
CGGCGTGAACGCCTTATCCGGCCTACGGATGGCGTGAGAATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGT‑GGCGCGAGAAT‑TTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCG > NZ_CP025268/373989‑374261 | gggcgTGAGTTCCTTATCCGGTCTACGGAGGGCGTGAGAATTGGTAGGTCTGATAGAGCGCGTTAGCGTCGCATCAGGCATCTGCGCACGAGTGCCGGATGCGGCGTGAACGGCTTATCCGGCCTACGGAT‑GGCGCgcga < 2:3736401/139‑1 (MQ=11) ggcgTGAACGCCTTATCCGGCCTACGGATGGCGTGAGAATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAT‑GGCGCGGGaa > 2:2045807/1‑140 (MQ=255) cgTGAACGCCTTATCCGGCCTACGGATGGCGTGAGAATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGAT‑GGCGCGGGAAt‑t > 1:2930814/1‑140 (MQ=16) cgTGAACGCCTTATCCGGCCTACGGATGGCGTGAGAATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGAT‑GGCGCGGGAAt‑t > 2:1707062/1‑140 (MQ=16) tGAACGCCTTATCCGGCCTACGGATGGCGTGAGAATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGAT‑GGCGCGGGAAT‑TTg < 1:1038165/140‑1 (MQ=16) gAACGCCTTATCCGGCCTACGGATGGCGTGAGAATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGAT‑GGCGCGGGAAT‑TTGt < 1:2471857/140‑1 (MQ=9) gAACGCCTTATCCGGCCTACGGATGGCGTGAGAATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGAT‑GGCGCGGGAAT‑TTGt < 1:2471780/140‑1 (MQ=16) gAACGCCTTATCCGGCCTACGGATGGCGTGAGAATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGAT‑GGCGCGGGAAT‑TTGt < 2:224561/140‑1 (MQ=9) accGCCTTATCCGGCCTACGGATGGCGTGAGAATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGAT‑GGCGCGGGAAT‑TTGTa < 2:1203289/138‑1 (MQ=9) aCGCCTTATCCGGCCTACGGATGGCGTGAGAATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGT‑GGCGCGAGAAT‑TTGTAg < 2:2780317/140‑1 (MQ=38) cGCCTTATCCGGCCTACGGATGGCGTGAGAATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCGTATCCGGCCTACGGAT‑GGCGCGGGAAG‑TTGTAgg > 2:2892407/1‑140 (MQ=255) gCCTTATCCGGCCTACGGATGGCGTGCGAATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGCCTGCCGGATGCGGCGTGACCGCCTTATCCGGCCTAAGGAT‑GGCGCGGGAAT‑TTGTAGGc < 1:1114656/140‑1 (MQ=11) gCCTTATCCGGCCTACGGATGGCGTGAGAATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGT‑GGCGCGAGAAT‑TTGTAGGc < 1:532136/140‑1 (MQ=37) aTCCGGCCTACGGATGGCGTGAGAATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGAT‑GGCGCGGGAAT‑TTGTAGGCCTGAt > 2:114318/1‑140 (MQ=21) aTCCGGCCTACGGATGGCGTGAGAATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGAT‑GGCGCGGGAAT‑TTGTAGGCCTGAt > 1:3458026/1‑140 (MQ=16) aTCCGGCCTACGGATGGCGTGAGAATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGAT‑GGCGCGGGAAT‑TTGTAGGCCTGAt > 1:3291042/1‑140 (MQ=16) ggCCTACGGATGGCGTGAGAATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGAT‑GGCGCGGGAAT‑TTGTAGGCCTGATAAGa < 1:1237491/140‑1 (MQ=16) ggCCTACGGATGGCGTGAGAATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGAT‑GGCGCGGGAAT‑TTGTAGGCCTGATAAGa < 1:2732035/140‑1 (MQ=16) gCCTACGGATGGCGTGAGAATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGAT‑GGCGCGGGAAT‑TTGTAGGCCTGATAAGAc > 1:942335/1‑140 (MQ=16) gCCTACGGATGGCGTGAGAATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGAT‑GGCGCGGGAAT‑TTGTAGGCCTGATAAGAc > 1:4791115/1‑140 (MQ=16) gCCTACGGATGGCGTGAGAATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGAT‑GGCGCGGGAAT‑TTGTAGGCCTGATAAGAc > 1:2617499/1‑140 (MQ=16) cGGATGGCGTGAGAATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGAT‑GGCGCGGGAAT‑TTGTAGGCCTGATAAGACGCGtt > 2:5007415/1‑140 (MQ=12) cGGATGGCGTGAGAAGTTGTAGGTCTGATAAGACGGGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGAT‑GGCGCGGGAAT‑TTGTGTGCCTGATAAGACGCGtt > 2:1755158/1‑140 (MQ=11) ggATGGCGTGAGAATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGAT‑GGCGCGGGAAT‑TTGTAGGCCTGATAAGACGCGTTa > 1:3130662/1‑140 (MQ=2) ggCGTGAGAATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGAT‑GGCGCGGGAAT‑TTGTAGGCCTGATAAGACGCGTTAGCGt < 1:950156/140‑1 (MQ=12) ggCGTGAGAATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGAT‑GGCGCGGGAAT‑TTGTAGGCCTGATAAGACGCGTTAGCGt > 1:133781/1‑140 (MQ=12) ggCGTGAGAATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGGGAAGGCCTTATCCGGCCTACGGAT‑GGGGCGGGGAT‑TTGTAGGCCTGATAAGACGGGTTGGCGt > 1:2676320/1‑140 (MQ=11) ggCGTGAGAATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGGGAACGCCTTCGCCGGCCTACGTAT‑GCCGCGGGCAT‑TTGTAAGCCTGATAAGACTCGTCAGCgg > 2:1639223/1‑139 (MQ=11) gCGTGAGAATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGAT‑GGCGCGGGAAT‑TTGTAGGCCTGATAAGACGCGTTAGCGTc > 1:2548664/1‑140 (MQ=9) gCGTGAGAATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGAT‑GGCGCGGGAAT‑TTGTAGGCCTGATAAGACGCGTTAGCGTc > 1:4719491/1‑140 (MQ=16) gCGTGAGAATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGAT‑GGCGCGGGAAT‑TTGTAGGCCTGATAAGACGCGTTAGCGTc > 2:4327460/1‑140 (MQ=16) cGTGAGAATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGAT‑GGCGCGGGAAT‑TTGTAGGCCTGATAAGACGCGTTAGCGTCg < 2:3659032/140‑1 (MQ=12) cTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGAT‑GGCGCGGGAAT‑TTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACggg > 2:783415/1‑140 (MQ=11) cTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGAT‑GGCGCGGGAAT‑TTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACggg < 1:2193052/140‑1 (MQ=2) cTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGAT‑GGCGCGGGAAT‑TTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACggg > 1:2507917/1‑140 (MQ=2) ccGGATGCGGCGTGAACGCCTTATCCGGCCTACGGAT‑GGCGCGGGAAT‑TTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTCTCCGGCCTACGGGTgg > 2:4050144/1‑140 (MQ=12) ccGGATGCGGCGTGAACGCCTTATCCGGCCTACGGAT‑GGCGCGGGAAT‑TTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTgg > 1:3779538/1‑140 (MQ=12) ccGGATGCGGCGTGAACGCCTTATCCGGCCTACGGAT‑GGCGCGGGAAT‑TTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTgg > 2:1241603/1‑140 (MQ=16) ggATGCGGCGTGAACGCCTTATCCGGCCTACGGAT‑GGCGCGGGAAT‑TTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGgcg < 2:338275/140‑1 (MQ=12) ggATGCGGCGTGAACGCCTTATCCGGCCTACGGAT‑GGCGCGGGAAT‑TTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGgcg < 2:4857877/140‑1 (MQ=9) aTGCGGCGTGAACGCCTTATCCGTCCTACGGTTCTGTGCTCGGGTCTTGTAGGCCTGATAAGACGCGTCAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGgcg < 2:1051578/140‑1 (MQ=11) tGCGGCGTGAACGCCTTATCCGGCCTACGGAT‑GGCGCGGGAAA‑TTGTAGGCCTGATAAGACGCGTTAGCGTAGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGGCTTATCCGGCCTACGGGTGgcgggg > 2:1901223/1‑137 (MQ=11) gcggcgTGAACGCCTTATCCGGCCTACGGAT‑GGCGCGGGAAT‑TTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTGTCCGGCCTACGGGTGGCGCgag < 1:991723/140‑1 (MQ=255) gcggcgTGAACGCCTTATCCGGCCTACGGAT‑GGCGCGGGAAT‑TTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCgag < 2:552445/140‑1 (MQ=17) gcggcgTGAACGCCTTATCCGGCCTACGGAT‑GGCGCGGGAAT‑TTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCgag < 1:1906092/140‑1 (MQ=12) gcggcgTGAACGCCTTATCCGGCCTACGGAT‑GGCGCGGGAAT‑TTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTCCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCgag < 1:1128658/140‑1 (MQ=255) cggcgTGACCGCCTTATCCGGCCTACGGAT‑GGCGCGGGAAT‑TTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCgaga < 2:428934/140‑1 (MQ=9) cggcgTGAACGCCTTATCCGGCCTACGGAT‑GGCGCGGGAAT‑TTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCCTCTGCGCACGACTGCCGGACGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCgaga < 2:2628510/140‑1 (MQ=255) cggcgTGAACGCCTTATCCGGCCTACGGAT‑GGCGCGGGAAT‑TTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCgagg > 2:2084575/1‑139 (MQ=12) cggcgTGAACGCCTTATCCGGCCTACGGAT‑GGCGCGGGAAT‑TTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCgaga > 1:3720869/1‑140 (MQ=16) cggcgTGAACGCCTTATCCGGCCTACGGAT‑GGCGCGGGAAT‑TTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCgaga < 1:1241603/140‑1 (MQ=16) cggcgTGAACGCCTTATCCGGCCTACGGAT‑GGCGCGGGAAT‑TTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCgaga < 2:4139144/140‑1 (MQ=16) cggcgTGAACGCCTTATCCGGCCTACGGAT‑GGCGCGGGAAT‑TTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCgaga < 1:4298836/140‑1 (MQ=16) cggcgTGAACGCCTTATCCGGCCTACGGAT‑GGCGCGGGAAT‑TTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCgaga > 2:3553730/1‑140 (MQ=16) cggcgTGAACGCCTTATCCGGCCTACGGAT‑GGCGCGGGAAT‑TTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCgaga < 1:1490976/140‑1 (MQ=16) cggcgTGAACGCCTTATCCGGCCTACGGAT‑GGCGCGGGAAT‑TTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCgaga < 1:4162928/140‑1 (MQ=16) cggcgTGAACGCCTTATCCGGCCTACGGAT‑GGCGCGGGAAT‑TTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCgaga < 1:4139070/140‑1 (MQ=16) cggcgTGAACGCCTTATCCGGCCTACGGAT‑GGCGCGGGAAT‑TTGTAGGCCGGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCgaga < 2:1206103/140‑1 (MQ=12) gcgTGAACGCCTTATCCGGCCTACGGAT‑GGCGCGGGAAT‑TTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAAt > 1:3766392/1‑140 (MQ=16) cgTGAACGCCTTATCCTGCCTACGGAT‑GGCGCGGGAAG‑TTGTAGGCCTGATAAGACGCGTTAGCGGCGCATCAGGCATCTGCGCACGACTGCCGGATGCTGGATGTACGCCTTATCCGTCCGACTGGTCGCGCGAGGAtt > 2:1603160/1‑140 (MQ=11) tGAACGCCTTATCCGGCCTACGGAT‑GGCGCGGGAAT‑TTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTg < 1:577793/140‑1 (MQ=16) gAACGCCTTATCCGGCCTACGGAT‑GGCGCGGGAAT‑TTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGt < 1:4583017/140‑1 (MQ=12) gCCTTATCCGGCCTACGGAT‑GGCGCGGGAAT‑TTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGc < 2:3443988/140‑1 (MQ=16) gCCTTATCCGGCCTACGGAT‑GGCGCGGGAAT‑TTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGc < 2:3522624/140‑1 (MQ=9) gCCTTATCCGGCCTACGGAT‑GGCGCGGGAAT‑TTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGc < 2:3943352/140‑1 (MQ=18) gCCTTATCCGGCCTACGGAT‑GGCGCGGGAAT‑TTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGc < 2:3982179/140‑1 (MQ=18) gCCTTATCCGGCCTACGGAT‑GGCGCGGGAAT‑TTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGc < 1:4727122/140‑1 (MQ=16) cccTCATCCGGCCTACGGAC‑CGCGCGCGAAT‑TTGTCGGCCTGATACCACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGc < 2:317964/139‑1 (MQ=11) cTTATCCGGCCTACGGAT‑GGCGCGGGAAT‑TTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCt < 1:803404/140‑1 (MQ=18) tATCCGGCCTACGGAT‑GGCGCGGGAAT‑TTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGa < 1:1758518/140‑1 (MQ=12) tATCCGGCCTACGGAT‑GGCGCGGGAAT‑TTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGa < 1:4896163/140‑1 (MQ=16) agccGGCCTACGGAT‑GGCGCGGGAAT‑TTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCTCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGAt > 1:4082704/3‑140 (MQ=255) aTCCGGCCTACGGAT‑GGCGCGGGAGT‑TTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAGCGCCTTATCCGGCCTACGGGTGGCGCGAGCAGTTGGAGGgatgat > 2:4959707/1‑140 (MQ=11) aTCCGGCCTACGGAT‑GGCGCGGGAAT‑TTGTAGGCCTGATAAGAGGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAGCGGCTTATGCGGCCTACGGGTGGCGTGAGAAGTTTTAGGCCTGAt > 1:652762/1‑140 (MQ=11) tCCGGCCTACGGAT‑GGCGCGGGAAT‑TTGTAGGCCTGATAAGACGCGTTGGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATa < 2:2704739/140‑1 (MQ=12) tCCGGCCTACGGAT‑GGCGCGGGAAT‑TTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATa < 1:4913445/140‑1 (MQ=12) ccGGCCTACGGAT‑GGCGCGGGAAT‑TTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATaa < 1:2011717/140‑1 (MQ=9) ccGGCCTACGGAT‑GGCGCGGGAAT‑TTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGACGGATGAGGCGTGAACGCCTTATCCGGCCTAAGGGTGGCGCGAGAATTTGTAGGCCTGATaa < 2:4300729/140‑1 (MQ=11) ggCCTACGGAT‑GGCGCGGGAAT‑TTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGa < 2:2901334/140‑1 (MQ=17) ggCCTACGGAT‑GGCGCGGGAAT‑TTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGa < 1:1624990/140‑1 (MQ=17) ggCCTACGGAT‑GGCGCGGGAAT‑TTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGa < 1:3497169/140‑1 (MQ=16) ggCCTACGGAT‑GGCGCGGGAAT‑TTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGa < 1:2818637/140‑1 (MQ=16) ggCCTACGGAT‑GGCGCGGGAAT‑TTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGa < 1:73256/140‑1 (MQ=16) ggCCTACGGAT‑GGCGCGGGAAT‑TTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGa < 2:4146031/140‑1 (MQ=17) ccTACGGAT‑GGCGCGGGAAT‑TTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATGCGGCCTACGGGTCGCGCGAGAATTTGTAGGCCTGATAAGAcg > 2:4388940/1‑140 (MQ=11) ccTACGGAT‑GGCGCGGGAAT‑TTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACggg < 1:420362/109‑1 (MQ=2) aCGGAT‑GGCGCGGGAAT‑TTGTAGGCTTGATAAGATGCTTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGGGTTAACGCCTTATTCGGCCTACGGGTGCCGCGAGTATTGTTAGGCCTGAGAAGACGCGt > 1:389544/1‑140 (MQ=11) aCGGAT‑GGCGCGGGAAT‑TTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGt < 2:1448354/140‑1 (MQ=16) ggat‑GGCGCGGGAAT‑TTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGGTa > 2:2630830/4‑140 (MQ=255) t‑GGCGCGGGAAT‑TTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCg < 2:789648/140‑1 (MQ=21) ggCGCGGGAAT‑TTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAGCGCCTTATCCCGTCTACGGGTGGCGCGAGAATTTGTTGGCCTGATAAGACTCGTTAGCGt > 2:4637765/1‑140 (MQ=11) ggCGCGGGAAT‑TTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGt < 2:4397576/140‑1 (MQ=25) ggCGCGGGAAT‑TTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGt < 1:2532356/140‑1 (MQ=21) ggCGCGAAAAT‑TTGTAGGCCAGATACGACGCCTTACCGTCGCATCAGCCATCCCCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGt < 2:2426789/140‑1 (MQ=11) gcgcGGGAAT‑TTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTc > 2:65351/1‑140 (MQ=12) gcgcGGGAAT‑TTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTc > 1:2341143/1‑140 (MQ=21) gcgcGGGAAT‑TTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTc > 1:1948550/1‑140 (MQ=21) gcgcGGGAAT‑TTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAAAGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCAGATAAGACGCGTTAGCGTc > 2:3903706/1‑140 (MQ=255) cgcgGGAAT‑TTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCg < 1:1985355/140‑1 (MQ=18) cgcgGGAAT‑TTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGAGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGCTAAGACGCCTTAGCGTCg > 2:5059505/1‑140 (MQ=255) | CGGCGTGAACGCCTTATCCGGCCTACGGATGGCGTGAGAATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGT‑GGCGCGAGAAT‑TTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCG > NZ_CP025268/373989‑374261 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |