BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NZ_CP025268	4,608,154	G→A	noncoding (48/87 nt)	CXP41_RS23870 ←	tRNA‑Leu

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NZ_CP025268	4,608,154	0	G	A	99.2%	790.8 / NA	244	noncoding (48/87 nt)	CXP41_RS23870	tRNA‑Leu
Reads supporting (aligned to +/- strand): ref base G (0/1); major base A (147/94); minor base T (2/0); total (149/95)
Fisher's exact test for biased strand distribution p-value = 5.24e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 244 total aligned reads displayed.

CCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTC‑GTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGGTTTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAG  >  NZ_CP025268/4608018‑4608289

  ccACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCCTCTTACTTTTTTTGATATCGCCTC‑GTTTGGTGCGAGTGGGGGGGCTTGAACCCCCACGTCCGTAAGAACACt                                                                                                                                    >  1:1113128/1‑140 (MQ=255)

  ccACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTC‑GTTTGGTGCGAGGGGGGGGACTTTAACCCCCACGTCCGTAAGAacaca                                                                                                                                    >  1:2555462/1‑139 (MQ=255)

  ccACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTC‑GTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACt                                                                                                                                    <  1:3464848/140‑1 (MQ=255)

  ccACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTC‑GTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACt                                                                                                                                    >  1:2377644/1‑140 (MQ=255)

  ccACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCATACTTTTTTTGATATCGCCTC‑GTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAacacc                                                                                                                                    >  1:3818109/1‑139 (MQ=255)

   cACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCAC‑GTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTa                                                                                                                                   <  2:102517/140‑1 (MQ=255)

          gTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTC‑GTTTGGTGCGAGGGGGGGGGCTTGAACCCCCACGTCCGTAAGAACACTAACACCTg                                                                                                                            >  1:144283/1‑140 (MQ=255)

                  acTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATCT‑GCTACTGTTGGGTCGGAGTGGGGGTACTTCAACCCCCACGTCCGTAAGAACACGGCGACCTGAAGCTAgc                                                                                                                    >  2:4534961/1‑140 (MQ=18)

                  acTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTC‑GTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAgc                                                                                                                    >  1:4831415/1‑140 (MQ=255)

                   cTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTC‑GTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAgcg                                                                                                                   <  1:293420/140‑1 (MQ=255)

                    tAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTC‑GTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAgcgc                                                                                                                  >  1:3255123/1‑140 (MQ=255)

                      acacCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTC‑GTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGt                                                                                                                >  1:554181/1‑140 (MQ=255)

                      acacCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTC‑GTTTGGGGCGAGGGGGGGGCCTTGAACCCCCACGTCCGTAAGAACACTAACACCTCAAGCTAGCGCGt                                                                                                                >  1:2215391/1‑140 (MQ=255)

                         ccTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTC‑GTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTa                                                                                                             >  1:4029468/1‑140 (MQ=255)

                         ccTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTC‑GTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTa                                                                                                             >  1:1687620/1‑140 (MQ=255)

                          cTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTC‑GTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTAc                                                                                                            >  1:4509321/1‑140 (MQ=255)

                          cTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTC‑GTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTAc                                                                                                            >  1:4084972/1‑140 (MQ=255)

                          cTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGCACTCTTACTTTTTTTGATATCGCCTC‑GTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTAAAGCTAGCGCGTCTaa                                                                                                            >  2:1481312/1‑139 (MQ=25)

                            gaggCTAGCGCGTCTACCAATTCGGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTC‑GTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCa                                                                                                          <  2:184366/137‑1 (MQ=255)

                            gAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTC‑GTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCa                                                                                                          >  1:1078056/1‑140 (MQ=255)

                             aaGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTC‑GTTTGGTGCGAGTGGGGGGACTTGAACCCCCACGTCCGTAAGAACACCAACACCTGAAGCTAGCGCGTCTACCaa                                                                                                         >  2:4511234/1‑140 (MQ=255)

                             aaGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTGTTTGATATCGCCTC‑GTTTGGGGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTGACACCTGAAGCTAGCGCGTCTACCaa                                                                                                         >  2:2138884/1‑140 (MQ=255)

                                  aGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCGTCTCACTTTTTTTGATATCGCCTC‑GTTTGGTGCGTGGGGGGGCGCTTTAACCCCCCCGCCCGTAATAACACTAACACCTGAAGCTAGCGCGTCTACCACTTCCg                                                                                                    >  2:2973977/1‑140 (MQ=25)

                                  aGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTC‑GTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTccc                                                                                                    >  2:4825208/1‑139 (MQ=255)

                                  aGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTC‑GTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCg                                                                                                    >  1:397199/1‑140 (MQ=255)

                                  aGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCCCCTC‑GCTTGGTGCGAGGGGGGGGACTTTCACCCCCACGTCCGTACGAACACTACCACCTGAAGCTAGCGCCTCTACCAATTccc                                                                                                    >  2:3918411/1‑139 (MQ=25)

                                   gcgcGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTC‑GTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGc                                                                                                   <  1:865763/140‑1 (MQ=255)

                                     gcttCTGCCAATTCCGCCACCTTCACCCAGGCACCTTACGTGATTTGATATCGCCTC‑GTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCa                                                                                                 <  1:1497554/137‑1 (MQ=17)

                                     actgcTACCAATTCAGCGACGTACGCACAGGCAACTTACTTTTATTGATATCGCCTC‑GTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCa                                                                                                 <  2:4087515/136‑1 (MQ=18)

                                        tCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTC‑GTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCt                                                                                              >  1:184667/1‑140 (MQ=255)

                                          tACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTC‑GTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTc                                                                                            >  1:20639/1‑140 (MQ=255)

                                             cAATTCCGGGATCTACGCACAGTCATCTTACTTGTTTTGATATCGACTT‑GTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGcc                                                                                         <  2:592649/140‑1 (MQ=17)

                                             cAATTCCGGCACCGTCGCACAGTCATCTTACTTTTTTTGATATCGCCTC‑GTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGcc                                                                                         <  1:2998855/140‑1 (MQ=255)

                                             cAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTC‑GTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGcc                                                                                         <  1:3190984/140‑1 (MQ=255)

                                             cAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTC‑GTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGcc                                                                                         <  2:868733/140‑1 (MQ=255)

                                             cAATTCCGCCACCTTAGCACAGTCATCTTACTTTTTTTGATATCGCCTC‑GTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGcc                                                                                         <  2:1904413/140‑1 (MQ=255)

                                             cAATTCCGCCACCTACGCCCAGTCATCTTACTTTTTTTGATATCGCCTC‑GTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACCCCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGcc                                                                                         <  1:4357634/140‑1 (MQ=255)

                                              gaatCCGCGAGCTTCGCACAGGCATGTTACGTTTTTTGATATCGCCTC‑GTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGccc                                                                                        <  2:4390364/137‑1 (MQ=18)

                                              aaTTCCGCCACATTCGAACAGTCATCTTACTTTTTTTGATATCGCCTC‑GTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGccc                                                                                        <  2:1728592/140‑1 (MQ=255)

                                                 tCCGCGACCTTCGCACAGGCATGTTACTTGATTTGATATCGCCTC‑GTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGt                                                                                     <  2:1976006/140‑1 (MQ=18)

                                                  ccGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTC‑GTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTg                                                                                    >  1:1954217/1‑140 (MQ=255)

                                                  cagCCACTTTCGCACAGTCATCTTTCTTTTTTTGATATCGCCTC‑GTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTg                                                                                    <  1:4708356/138‑1 (MQ=255)

                                                    gCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTC‑GTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCg                                                                                  <  1:1809727/140‑1 (MQ=255)

                                                    gCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTC‑GTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCg                                                                                  >  2:242220/1‑140 (MQ=255)

                                                    gCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTC‑GTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCg                                                                                  <  1:477702/140‑1 (MQ=255)

                                                      cagcTTAGCACAGGCATGTTACTATTTTGGATATCGCCAC‑GTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAg                                                                                <  2:2479695/137‑1 (MQ=17)

                                                         cTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTC‑GTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCaa                                                                             >  1:1640567/1‑140 (MQ=255)

                                                         cTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTC‑GTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCaa                                                                             <  1:81276/140‑1 (MQ=255)

                                                                caGTCATCTTACTTTTTTTGATATCGCCTC‑GTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAAc                                                                      <  2:1151725/140‑1 (MQ=255)

                                                                  gTCATCTTACTTTTTTTGATATCGCCTC‑GTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATAACAACga                                                                    >  2:4207479/1‑139 (MQ=255)

                                                                   taaTCTTACTTTTTTTGATATCGCCTC‑GTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTg                                                                   >  1:4085992/3‑140 (MQ=255)

                                                                   tCATCTTACTTTTTTTGATATCGCCTC‑GTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACggg                                                                   >  2:640513/1‑138 (MQ=255)

                                                                   tCATCTTACTTTTTTTGATATCGCCTC‑GTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTg                                                                   >  1:3790761/1‑140 (MQ=255)

                                                                   tCATCTTACTTTTTTTGATATCGCCTC‑GTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTg                                                                   >  1:3692935/1‑140 (MQ=255)

                                                                   tCATCTTACTTTTTTTGATATCGCCTC‑GTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGCGCGAGCAATATCAACGTg                                                                   >  2:203947/1‑140 (MQ=255)

                                                                     aTCTTACTTTTTTTGATATCGCCTC‑GTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCACTGCGAGCAATATCAACGTGGt                                                                 >  2:3759199/1‑140 (MQ=255)

                                                                      tCTTACTTTTTTTGATATCGCCTC‑GTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGGtt                                                                >  1:3630964/1‑140 (MQ=255)

                                                                           cTTTTTTTGATATCGCCTC‑GTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGGgtttttg                                                           >  2:2206820/1‑138 (MQ=255)

                                                                           cTTTTTTTGATATCGCCTC‑GTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGGTTTTTgg                                                           <  2:3003009/140‑1 (MQ=255)

                                                                             ttttttGATATCGCCTC‑GTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTg                                                                                    >  2:3259470/1‑113 (MQ=255)

                                                                             ttttttGATATCGCCTC‑GTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGGTTTTTGGtt                                                         >  2:4313879/1‑139 (MQ=255)

                                                                             ttttttGATATCGCCTC‑GTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGGTTTTTGGTg                                                         >  1:136001/1‑140 (MQ=255)

                                                                             ttttttGATATCGCCTC‑GTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATAACAACGTGGTTTTTGGTg                                                         >  2:1246333/1‑140 (MQ=255)

                                                                             ttttttGATATCGCCTC‑GTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAACAATATCAACTAAGTTTTTGGTg                                                         >  2:4126872/1‑140 (MQ=18)

                                                                               ttttGATATCGCCTC‑GTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGGTTTTTGGTGCg                                                       <  1:2537127/140‑1 (MQ=255)

                                                                               ttcggATATCGACTC‑GTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCACTTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGGTTTTTGGTGCg                                                       <  2:4661132/136‑1 (MQ=255)

                                                                                tttGATATCGCCTC‑GTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGGTTTTTCGTGCGa                                                      >  2:4937319/1‑140 (MQ=255)

                                                                                tatGAAATAGCCAC‑GTTTGGTGCGAGGGGGGGGACTTGCACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGGTTTTTGGTGCGa                                                      <  2:11700/138‑1 (MQ=18)

                                                                                 ttGATATCGCCTC‑GTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCTATATCAAAGAGGTTTTTGGTGCGAg                                                     >  2:2939341/1‑140 (MQ=255)

                                                                                     tatCGCCTC‑GTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGGTTTTTGGTGCGAggggg                                                 <  1:683647/140‑1 (MQ=255)

                                                                                     tatCGCCTC‑GTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGGTTTTTGGTGCGAggggg                                                 >  1:4012612/1‑140 (MQ=255)

                                                                                     aatCGCCAC‑GGTTGGTGCGAGGGGTGGGACTTGAACCCCGACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTATACCAACTCCGGCACCTTCGCCCAGTACGAGCAATATCAACGTGGTTTTTGGTGCGAggggg                                                 <  2:1138498/139‑1 (MQ=18)

                                                                                      atCGCCTC‑GTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCGCAGTGCGAGCAATATCAACGTGGTTTTTGGTGCGAgggggg                                                <  2:922560/140‑1 (MQ=255)

                                                                                       ccGCCTC‑GGTTGGTGCGGGGAGGGGGACCGCAACCCCCACGTCCGCAAGACCACCAACACCTGACGATGGCGCGTCCACCAGTTCCGCAACCTTAGCCCAGTGCGCGCAACCTCACCGGGGTTTTTGGTGCGAggggggg                                               <  2:1743659/139‑1 (MQ=255)

                                                                                           cTC‑GTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGGTTTTTGGTGCGAGGGGGGGGACt                                           >  1:830203/1‑140 (MQ=255)

                                                                                            tC‑GTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGGTTTTTGGTGCGAGGGGGGGGACtt                                          <  2:917122/140‑1 (MQ=255)

                                                                                                   ggTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGGTTTTTGGTGCGAGGGGGGGTACTTGAAccc                                    >  1:2289308/1‑140 (MQ=255)

                                                                                                     tGCGAGGGGGGCGACTTGAACCCCCACGTCCGTAAGACCGCTTACACCTGCAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCGGTGCGAGCAATATCAACGTGGTTTTTGGTGCGAGGGGGGGGACTTGAAccccc                                  <  1:2710320/140‑1 (MQ=25)

                                                                                                          ggggtgggACCTGAACCCCCACGTCCTTAAGAACACTAGCAGCTGAAGATAGCGCGGCTGCCAATTCCGCCACCTTCGCTCAGTGCGAGCAATATCACCGTGGTTTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTc                             <  2:2762229/140‑1 (MQ=25)

                                                                                                          ggggggggACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGAGGTTCTTGGTCCGAGGGGGGGGACATGGACCCCCACGTc                             >  2:2003518/1‑140 (MQ=21)

                                                                                                              ggggACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGGTTTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTa                         >  1:3921515/1‑140 (MQ=255)

                                                                                                                ggACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGGTTTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAg                       <  1:4605397/140‑1 (MQ=255)

                                                                                                                 gACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGTTTTTTGGTGCGAGGGGGTGGCCTTGAACCCCCACGTCCGTGAgg                      >  2:816720/1‑140 (MQ=25)

                                                                                                                 gACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGGTTTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAgg                      <  1:3478466/140‑1 (MQ=255)

                                                                                                                    ttGAACCCCCACGTCCGTAAGAACACTACCACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGAGAGCAATATCAACGTGGTTTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGGaca                   <  1:4931439/140‑1 (MQ=255)

                                                                                                                    ttGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGGTTTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGGaca                   <  1:957544/140‑1 (MQ=255)

                                                                                                                      gAACCCCCACGTCCGTCAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGCGCGAGCTATACCAACGTGGTTTTTGGTGCGAGGGGAGGGACTCGAGCCCCCACGTCCGTATGGACACt                 >  1:3675235/1‑140 (MQ=21)

                                                                                                                      gAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCACTTACAACGAGTTTTTTGGTGCGAGGGGGGGTCCTTGAGCCCCCACGTCCGTGAGGATACt                 >  2:2708122/1‑140 (MQ=18)

                                                                                                                      gAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGGTTTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACt                 <  1:3570423/140‑1 (MQ=255)

                                                                                                                        aCCCCCACGTCCGTAAGAACACAAGCTCCTGAAGCTAGCGCGTCTACCAAGTCCGACACCCTCGCCCAGTGCGAGCAATATCAACGTGGTTTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTaa               <  2:2960774/140‑1 (MQ=37)

                                                                                                                            ccACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGccc                                                                                        <  1:2763031/63‑1 (MQ=18)

                                                                                                                            ccACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGGTTTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACAcc           >  1:3952506/1‑140 (MQ=255)

                                                                                                                            ccACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGGTTTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACAcc           >  1:1190891/1‑140 (MQ=255)

                                                                                                                              aCGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGGTTTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTg         >  1:441261/1‑140 (MQ=255)

                                                                                                                              aCGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGGTTTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTg         >  1:4972292/1‑140 (MQ=255)

                                                                                                                              aCGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGGTTTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTg         >  1:2160394/1‑140 (MQ=255)

                                                                                                                              aCGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGCGCGAGCACTATCAACGTAGTGTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGCGAGCACGCAAACACATg         >  2:3728074/1‑140 (MQ=21)

                                                                                                                                   cGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGGTTTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCt    >  1:3388730/1‑140 (MQ=255)

                                                                                                                                    gTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGGTTTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTa   >  2:3030848/1‑140 (MQ=255)

                                                                                                                                     tAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGGTTTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAg  >  1:1741643/1‑140 (MQ=255)

CCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTC‑GTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGGTTTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAG  >  NZ_CP025268/4608018‑4608289

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 13 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`