| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP025268 | 4,641,859 | A→G | S119P (TCC→CCC) | arcA ← | two‑component system response regulator ArcA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP025268 | 4,641,859 | 0 | A | G | 99.1% | 1051.4 / ‑5.6 | 322 | S119P (TCC→CCC) | arcA | two‑component system response regulator ArcA |
| Reads supporting (aligned to +/- strand): ref base A (0/2); major base G (183/134); minor base C (2/1); total (185/137) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 323 total aligned reads displayed.
GCTGCGCGGCAGCTTGTACTGCTCGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGACAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGAACGGTTTGGTGATGTAGTCATCTGCACCGATTTCGAGGCCGAGAATTTTATCGACTTCGTTGTCACGGCCAGTCAGGAACATCAACGCAACATTC > NZ_CP025268/4641722‑4641995 | gcgGCAGCTTGTACTGCTCGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAgg > 1:1098568/1‑140 (MQ=255) gCAGCTTGTACTGCTCGCAATCAGGGACGATGAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTg < 1:3693376/140‑1 (MQ=255) cAGCTTGTACTGCTCGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGc > 1:1746840/1‑140 (MQ=255) tGTACTGCTCGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCa < 1:4699967/140‑1 (MQ=255) aCTGCTCGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGa > 2:2313506/1‑140 (MQ=255) gCTCGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATc > 2:1568258/1‑140 (MQ=255) cTCGCCATCAGGGCCTATCAACGAACGGCTGTTGTTGTCTAGTTCCCAACCATTTCACTGGTATCTTTCTACGCTCCGACGCTCTTCGCTGACAGTACCCAGATTCATGGTACGGCGCAGTAGGTTGCGTGCACGAATct > 2:4620541/1‑139 (MQ=255) cTCGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAAGGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGCACGGGGCAGTAGGTCGCGTGCACGAATCg > 2:4300115/1‑140 (MQ=255) cTCGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCg > 1:3296191/1‑140 (MQ=255) cTCGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCg > 2:866225/1‑140 (MQ=255) cTCGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCg > 1:4974227/1‑140 (MQ=255) cTCGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCg > 2:1261448/1‑140 (MQ=255) cTCGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCg > 2:1442715/1‑140 (MQ=255) cTCGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCg > 2:1620601/1‑140 (MQ=255) cTCGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCg > 2:2666092/1‑140 (MQ=255) cTCGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCg > 2:3149861/1‑140 (MQ=255) cTCGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCg > 2:3239389/1‑140 (MQ=255) cTCGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCg > 2:3277124/1‑140 (MQ=255) cTCGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCg > 2:3508748/1‑140 (MQ=255) cTCGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCg > 2:4440378/1‑140 (MQ=255) cTCGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCg > 2:4724733/1‑140 (MQ=255) cTCGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCg > 1:3007092/1‑140 (MQ=255) cTCGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCg > 1:3125180/1‑140 (MQ=255) cTCGCCATCAGGGCCGATCAACGAACGGCGGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAATGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATct > 2:1490142/1‑139 (MQ=255) aacGCCATCAGGGCCGAACAACGAACGTCTGTTACAGACCAGGCCCCAACTACTGCACTGCTAGCTTTCAACGCGACAACGTTCTTCCCTGACAGTACCCAGATTCATGCTAAGGGACCTTAGATTGCGTCCACGAAtag < 2:215061/138‑3 (MQ=255) tCGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGt > 1:1040943/1‑140 (MQ=255) tCGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGt > 2:1829998/1‑140 (MQ=255) tCGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCGTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGt > 1:3985973/1‑140 (MQ=255) cGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTc > 1:873642/1‑140 (MQ=255) cGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTc > 1:1971198/1‑140 (MQ=255) gCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCa > 1:1594299/1‑140 (MQ=255) gCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGCCAGTAGGTTGCGTGCACGAATCGTCa > 2:2959614/1‑140 (MQ=255) gggCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCAcg < 2:2262369/140‑1 (MQ=255) ggCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCAcgc < 1:4282167/140‑1 (MQ=255) ggCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCAcgc < 1:2063180/140‑1 (MQ=255) ggCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCAcgc < 1:77801/140‑1 (MQ=255) ccGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCgg > 1:4531221/1‑140 (MQ=255) tCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTg < 1:1219535/140‑1 (MQ=255) tCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTg > 2:3186172/1‑140 (MQ=255) tCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTg > 1:943236/1‑140 (MQ=255) tCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCGGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGGCAGTTCACGCGGGTTg < 1:4774754/140‑1 (MQ=255) cAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGa < 1:3497917/140‑1 (MQ=255) aacgaacgGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGaa < 1:2174475/140‑1 (MQ=255) aacgaacgGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGaa < 2:1884648/140‑1 (MQ=255) aacgaacgGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGaa < 2:105081/140‑1 (MQ=255) aacgaacgGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGaa < 2:4925608/140‑1 (MQ=255) aacgaacgGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGAACGAATCGTCAGTTCACGCGGGTTGaa < 1:83057/140‑1 (MQ=255) acgGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGAACGGtt < 1:4792591/140‑1 (MQ=255) ggCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGAACGGTTTg > 2:3666377/1‑140 (MQ=255) gCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGAACGGTTTgg < 1:343371/140‑1 (MQ=255) tGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGAACGGTTTGGTg < 1:1492692/140‑1 (MQ=255) tGATGTCCAGTTCCCAACAATTGAAGTGGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGGTGAACGGGTTGGTGATg < 1:740850/140‑1 (MQ=255) aTGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGAACGGTTTGGTGATGTa < 2:4642581/140‑1 (MQ=255) aTGTCCAGTGTCCAACCATTGTACTTGTAGCTTTCAACGCTACGACGTTCTTCGCATACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGAACGGTTTGGTGATGTa < 2:3732134/140‑1 (MQ=255) tGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGAACGGTTTGGTGATGTAg < 1:3805754/140‑1 (MQ=255) tCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGAACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGAGCGGTTTGGTGATGTAGTc > 2:3637843/1‑140 (MQ=255) ccAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGAACGGTTTGGTGATGTAGTCa > 1:2531062/1‑140 (MQ=255) cAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTGCGACGTTCTTCGCTGACGGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCAGGAATCGTCAGTTCACGCGGGTTGAACGGTTTCGTGATGTAGTCAt > 2:4408962/1‑140 (MQ=255) aGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGAACGGTTTGGTGATGTAGTCATc < 2:3389410/140‑1 (MQ=255) gTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGAACGGTTTGGTGATGTAGTCATCt > 1:4115871/1‑140 (MQ=255) gTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGAACGGTTTGGTGATGTAGTCATCt > 2:2753984/1‑140 (MQ=255) cccAACCATTGAACTTGTAGCTTTCAACGCTACGCCGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGAACGGTTTGGTGATGTAGTCATCTGCa < 1:764901/140‑1 (MQ=255) cAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGAACGGTTTGGTGATGTAGTCATCTGCAcc < 1:2804551/140‑1 (MQ=255) cAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCGTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGAACGGTTTGGTGATGTAGTCATCTGCAcc < 2:1093638/140‑1 (MQ=255) aaCCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGAACGGTTTGGTGATGTAGTCATCTGCACCg > 2:1574109/1‑140 (MQ=255) aaCCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGAACGGTTTGGTGATGTAGTCATCTGCACCg > 1:1638859/1‑140 (MQ=255) aaCCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGAACGGTTTGGTGATGTAGTCATCTGCACCg > 2:5006335/1‑140 (MQ=255) ttGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCTAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGAACGGTTTGGTGATGTAGTCATCTGCACCGATTTc > 1:1940414/1‑140 (MQ=255) ttGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGGTGAACGGTTTGGTGATGTAGTCATCTGCACCGATTTc > 2:2226106/1‑140 (MQ=255) gAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGAACGGTTTGGTGATGTAGTCATCTGCACCGATTTCGa > 2:422203/1‑140 (MQ=255) gTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGAACGGTTTGGTGATGTAGTCATCTGCACCGATTTCGAGGCCga > 1:4827857/1‑140 (MQ=255) tttCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGTGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGAACGGTTTGGTGATGTAGTCATCTGCACCGATTTCGAGGCCGAGAAtt < 2:4082057/140‑1 (MQ=255) cAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGAACGGTTTGGTGATGTAGTCATCTGCACCGATTTCGAGGCCGAGAATTTTa > 1:455701/1‑140 (MQ=255) aCGCTACGACGTTCTTCGCTGACAGTACCCAGATTCCTGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGAACGGTTTGGTGATGTAGTCATCTGCACCGATTTCGAGGCCGAGAATTTTATc < 1:5032256/140‑1 (MQ=255) tACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGAACGGTTTGGTGATGTAGTCATCTGCACCGATTTCGAGGCCGAGAATTTTATCGACt > 1:1617458/1‑140 (MQ=255) tACGACGTTCTTCGCTGAAAGTACTCAGATACATGGTGCGGGGCTGTAGCTTGCGTGCAAGAATCGGCAGTTCACGCGGGTTGGACGGTTTGCTTGTGTAGTCATCTGGACCGATTTGGCGGCGGAGAAATTTATCGACt > 2:3802520/1‑140 (MQ=255) cgacgTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGAACGGTTTGGTGATGTAGTCATCTGCACCGATTTCGAGGCCGAGAATTTTATCGACTTc < 2:1268441/140‑1 (MQ=255) gacgTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGAACGGTTTGGTGATGTAGTCATCTGCACCGATTTCGAGGCCGAGAATTTTATCGACTTCg < 1:2581201/140‑1 (MQ=255) cgTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGAACGGTTCGGTGATGTAGTCATCTGCACCGATTTCGAGGCCGAGAGTTTTATCGACTTCGtt > 2:1177885/1‑140 (MQ=255) ttcttcGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGAACGGTTTGGTGATGTAGTCATCTGCACCGATTTCGAGGCCGAGAATTTTATCGACTTCGTTGt > 2:2531223/1‑140 (MQ=255) cGCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGAACGGTTTGGTGATGTAGTCATCTGCACCGATTTCGAGGCCGAGAATTTTATCGACTTCGTTGTCACgg > 2:2057713/1‑140 (MQ=255) gCTGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGAACGGTTTGGTGATGTAGTCATCTGCACCGATTTCGAGGCCGAGAATTTTATCGACTTCGTTGTCACGGc < 1:4057261/140‑1 (MQ=255) tGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGAACGGTTTGGTGATGTAGTCATCTGCACCGATTTCGAGGCCGAGAATTTTATCGACTTCGTTGTCACGGCCa > 2:6379/1‑140 (MQ=255) tGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGAACGGTTTGGTGATGTAGTCATCTGCACCGATTTCGAGGCCGAGAATTTTATCGACTTCGTTGTCACGGCCa < 1:617484/140‑1 (MQ=255) tGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGAACGGTTTGGTGATGTAGTCATCTGCACCGATTTCGAGGCCGAGAATTTTATCGACTTCGTTGTCACGGCCa > 1:1124534/1‑140 (MQ=255) tGACAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGAACGGTTTGGTGATGTAGTCATCTGCACCGATTTCGAGGCCGAGAATTTTATCGACTTCGTTGTCACGGCCa < 2:192010/140‑1 (MQ=255) aCAGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGAACGGTTTGGTGATGTAGTCATCTGCACCGATTTCGAGGCCGAGAATTTTATCGACTTCGTTGTCACGGCCAGt > 2:724152/1‑140 (MQ=255) aGTACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGAACGGTTTGGTGATGTAGTCATCTGCACCGATTTCGAGGCCGAGAATTTTATCGACTTCGTTGTCACGGCCAGTCa < 1:2739458/140‑1 (MQ=255) tACCCAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGAACGGTTTGGTGATGTAGTCATCTGCACCGATTTCGAGGCCGAGAATTTTATCGACTTCGTTGTCACGGCCAGTCAgg < 2:3940844/140‑1 (MQ=255) cccAGATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGAACGGTTTGGTGATGTAGTCATCTGCACCGATTTCGAGGCCGAGAATTTTATCGACTTCGTTGTCACGGCCAGTCAGGaa > 2:452330/1‑140 (MQ=255) gATTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCAAGCGGGTTGAACGGTTTGGTGATGTAGTCATCTGCACCGATTTCGAGGCCGAGAATTTTATCGACTTCGTTGTCACGGCCAGTCAGGAACATc > 2:4845839/1‑140 (MQ=255) aTTCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGAACGGTTTGGTGATGTAGTCATCTGCACCGATTTCGAGGCCGAGAATTTTATCGACTTCGTTGTCACGGCCAGTCAGGAACATCa > 1:2906707/1‑140 (MQ=255) ttCATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGAACGGTTTGGTGATGTAGTCATCTGCACCGATTTCGAGGCCGAGAATTTTATCGACTTCGTTGTCACGGCCAGTCAGGAACATCaa > 2:2005497/1‑140 (MQ=255) cATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGAACGGTTTGGTGATGTAGTCATCTGCACCGATTTCGAGGCCGAGAATTTTATCGACTTCGTTGTCACGGCCAGTCAGGAACATCAACg < 1:4472758/140‑1 (MQ=255) cATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGAACGGTTTGGTGATGTAGTCATCTGCACCGATTTCGAGGCCGAGAATTTTATCGACTTCGTTGTCACGGCCAGTCAGGAACATCAACg > 1:1322346/1‑140 (MQ=255) cATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGAACGGTTTGGTGATGTAGTCATCTGCACCGATTTCGAGGCCGAGAATTTTATCGACTTCGTTGTCACGGCCAGTCAGGAACATCAACg > 2:3106743/1‑140 (MQ=255) cATGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGAACGGTTTGGTGATGTAGTCATCTGCACCGATTTCGAGGCCGAGAATTTTATCGACTTCGTTGTCACGGCCAGTCAGGAACATCAACg > 2:119049/1‑140 (MQ=255) tGGTACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGAACGGTTTGGTGATGTAGTCATCTGCACCGATTTCGAGGCCGAGAATTTTATCGACTTCGTTGTCACGGCGAGTCCGGAACATCAACCCa > 2:2938013/1‑140 (MQ=255) tGGCACGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGAACGGTTTGGTGATGTAGTCATCTGCACCGATTTCGAGGCCGAGAATTTTATCGACTTCGTTGTCACGGCCAGTCAGGAACATCAACGCa > 2:4950776/1‑140 (MQ=255) cGGGGCAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGAACGGTTTGGTGATGTAGTCATCTGCACCGATTTCGAGGCCGAGAATTTTATCGACTTCGTTGTCACGGCCAGTCAGGAACATCAACGCAACAtt > 1:2962803/1‑140 (MQ=255) | GCTGCGCGGCAGCTTGTACTGCTCGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGACAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGAACGGTTTGGTGATGTAGTCATCTGCACCGATTTCGAGGCCGAGAATTTTATCGACTTCGTTGTCACGGCCAGTCAGGAACATCAACGCAACATTC > NZ_CP025268/4641722‑4641995 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |