Predicted mutation | ||||||
---|---|---|---|---|---|---|
evidence | seq id | position | mutation | annotation | gene | description |
RA | NZ_CP025268 | 3,728,808 | (C)10→8 | pseudogene (1254‑1255/1457 nt) | xylB ← | xylulokinase |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NZ_CP025268 | 3,728,800 | 0 | C | . | 89.1% | 511.0 / 57.2 | 139 | pseudogene (1263/1457 nt) | xylB | xylulokinase |
Reads supporting (aligned to +/- strand): ref base C (14/1); new base . (46/77); total (61/78) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 3.23e-05 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
* | NZ_CP025268 | 3,728,801 | 0 | C | . | 90.4% | 423.6 / 70.5 | 139 | pseudogene (1262/1457 nt) | xylB | xylulokinase |
Reads supporting (aligned to +/- strand): ref base C (1/2); major base . (38/75); minor base G (12/0); total (61/78) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.89e-06 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 160 total aligned reads displayed.
GGCTGATAAGCGGCATAACGCTGCGCATCTGGTAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACATCCCCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCAACGTAACACTTTGCGGTTTAATACCGCAGGCATGCACGACATCCA > NZ_CP025268/3728661‑3728933 || ggCTGATAAGCGGCATAACGCTGCGCATCTGGTAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAAGTCAATGAGCGATTTCACTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACATc < 2:10503853/140‑1 (MQ=255) tGATAAGCGGCATAACGCTGCGCATCTGGTAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACATcccc < 1:933413/140‑1 (MQ=255) aGCGGCATAACGCTGCGCATCTGGTAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACATccccccccg < 1:7435646/140‑2 (MQ=255) aGCGGCATAACGCTGCGCATCTGGTAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACATccccccccg < 2:5963266/140‑2 (MQ=255) aGCGGCATAACGCTGCGCATCTGGTAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACATccccccccg < 1:9488364/140‑2 (MQ=255) aGCGGCATAACGCTGCGCATCTGGTAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACATccccccccg < 2:4505897/140‑2 (MQ=255) cGGCATAACGCTGCGCATCTGGTAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACATccccccccgta < 1:6372232/140‑4 (MQ=255) cGGCATAACGCTGCGCATCTGGTAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACATccccccccgta < 2:3140094/140‑4 (MQ=255) gCATAACGCTGCGCATCTGGTAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACATccccccccgtacg > 2:2408083/1‑135 (MQ=255) cGCTGCGCATCTGGTAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACAT‑‑CCCCCCCCGTACGGTAATc < 1:10404097/140‑1 (MQ=255) gCTGCGCATCTGGTAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACAT‑‑CCCCCCCCGTACGGTAATCg < 1:492313/140‑1 (MQ=255) cTGCGCATCTGGTAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACAT‑‑CCCCCCCCGTACGGTAATCGa > 2:5641260/1‑140 (MQ=255) cgcATCTGGTAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACAT‑‑CCCCCCCCGTACGGGAATCGAgct > 2:4810379/1‑140 (MQ=255) cgcATCTGGTAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑‑CTCCCCCCCCGTACGGTAATCGAgct > 2:418662/1‑140 (MQ=255) aTCTGGTAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACAT‑‑CCCCCCCCGTACGGTAATCGAgctgct < 1:10267540/140‑1 (MQ=255) aTCTGGTAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACAT‑‑CCCCCCCCGTACGGTAATCGAgctgct < 1:8731058/140‑1 (MQ=255) aTCTGGTAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACAT‑‑CCCCCCCCGTACGGTAATCGAgcggct < 2:7433861/140‑1 (MQ=255) cTGGTAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACAT‑‑CCCCCCCCGTACGGTAATCGAGCTGCTGa < 1:7751938/140‑1 (MQ=255) cTGGTAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACAT‑‑‑CCCCCCCGTACGGGAATCGAGCTGCTGAc > 2:4028910/1‑140 (MQ=255) tGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACAT‑‑CCCCCCCCGTCCGGGAATCGAGCTGCGGACGGCGGag > 2:832687/1‑139 (MQ=255) tGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACAT‑‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGat < 1:9187958/140‑1 (MQ=255) gACTGTTCTAACGGTAGTTGCGTCAACACTTCAATGATCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACAT‑CCCCCCCACGTACGGTAATCGAGCTGCTGACCGCTGatat < 1:7591452/140‑1 (MQ=255) gTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACAT‑‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGcc < 1:2057794/140‑1 (MQ=255) ttCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACA‑‑GCCCCCCCCGTTCGGGGATCGAGCTGCTGAGGGCTGGTATCCGGCa > 2:127816/1‑140 (MQ=255) tCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACAT‑‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAg < 1:7650979/140‑1 (MQ=255) tAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACAT‑‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCa < 1:6280351/140‑1 (MQ=255) aCGGTAGTTGCGGCAACAATTAAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACAT‑‑CGCCCCCCGGACGGTACTCGAGCTGCTGACCGCTGATAACCGCCAGCATc > 2:10538887/1‑140 (MQ=255) cGGTAGGTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACAT‑‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCt < 2:2688391/140‑1 (MQ=255) gTAGTTGCTGCAACAATTCACTGAGCGCTGTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACAT‑‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGAATCTGa < 2:6329215/140‑1 (MQ=255) gTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACAT‑‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGa < 2:4666991/140‑1 (MQ=255) aGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACAT‑‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCGAGCATCTGACg > 2:6464368/1‑140 (MQ=255) aGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACAT‑‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACg > 2:10298524/1‑140 (MQ=255) aGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACAT‑‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACg < 1:9873555/140‑1 (MQ=255) aGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACAT‑‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACg < 1:6823620/140‑1 (MQ=255) aGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACAT‑‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACg < 2:9606688/140‑1 (MQ=255) aGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACA‑‑GCCCCCGCCGTACGGGCGTCGGGCTGCTGGGCGGGGATAGCCGCGAGCAGCTGACg > 1:195294/1‑140 (MQ=255) aGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGACGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACAT‑‑CCACCACCGTACGGTATTAGAGCTGCTGACCGCTGATATCCGCGAGCATCTGACg > 2:2385331/1‑140 (MQ=255) gTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACAT‑‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGc < 2:9455971/140‑1 (MQ=255) gTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACA‑‑GCGCCCCCCGTACGGTAATGGTGGTGCTGGCCGCGGTTTTGCGCCCGCAGCTGACGc > 2:28914/1‑140 (MQ=255) ttGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACAT‑‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGcc < 2:10094238/140‑1 (MQ=255) ttGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACAT‑‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGcc < 1:7684136/140‑1 (MQ=255) gCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACAT‑‑CCCCCCCCGTACGGTAATCGGGCTGCTGACCGGTGATGTCCGCCAGCATCGGACGcccg > 1:4653780/1‑138 (MQ=255) gCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACA‑‑GCCCCCCCCGGGCGGGAGTGGTGCGGCGGACCGGGGGTGTCCGCCGGCGTCTGACGCCAg > 1:4653581/1‑140 (MQ=255) gCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑‑CTCCCCCCCCGTTCGGGAATCGAGCTGCTGACCGCGGATATCCGCCAGCGTCTGACGCCAGTAc > 2:8524930/1‑140 (MQ=255) caacaaTTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACAT‑‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACt < 1:3619213/140‑1 (MQ=255) caacaaTTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACAT‑‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACt < 1:5641260/140‑1 (MQ=255) aacaaTTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACAT‑‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTc < 2:10598255/140‑1 (MQ=255) acaaTTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACAT‑‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCa < 1:4879905/140‑1 (MQ=255) aTTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑‑CTCCCCCCCCGTACGGTCATCGTGCTGCTGACCGCTGATGTCCGCCAGCAGCTGGCGCGGGTTCTCagtc > 2:6914290/1‑137 (MQ=255) ttCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACAT‑‑CCCCCCCAGTACGGTAATCGAGCTTCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTAc < 1:2385331/140‑1 (MQ=255) gAGCGATTTCTCTGGATTCGCCGCGCTCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACAT‑‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACTcgccc < 2:941856/140‑1 (MQ=255) gAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACAT‑‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGcgccc < 1:1059360/140‑1 (MQ=255) gAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACAT‑‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGcgccc < 1:2358148/140‑1 (MQ=255) aGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑‑CTCCCCCCCCGTTCGGTAAGCGAGCTGCGGACCGCTGATATGCGCCAGCATCTGACGCCAGTACTCACTACGcgcccc > 2:1940446/1‑140 (MQ=255) gCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACA‑‑GCCCCCCCCGGACGGGAATCGTGCTGCTGACCGCTGAGATCCGCCAGAAGCTGACGCCAGTACTCACTACGcgcgccg > 2:5457939/1‑140 (MQ=255) cGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACAT‑‑CCCCCCCCGTACGGTAATCGAgctg < 2:2919145/87‑1 (MQ=255) gATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACAT‑‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCt > 2:4192115/1‑112 (MQ=255) gATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACAT‑‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCt < 1:4192115/112‑1 (MQ=255) gATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACAT‑‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGcgccccgcc < 1:8467138/140‑1 (MQ=255) tctcTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACAT‑‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCa < 1:5830924/140‑1 (MQ=255) tctcTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACAT‑‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCa < 1:4300943/140‑1 (MQ=255) tctGGATTCGCCGCGATCTGCGCCCTCCTTGCGTCGCACTTTGCTTCCCCCTCAT‑‑CCCCCCCCTTACGTTAATGGATCTGGTGACCTCTGATAGCCGCCACCATCTGAAGCCAGTACTGAATACGGGAACCGcccccctt < 2:4987705/140‑4 (MQ=255) tctGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACAT‑‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAAt < 1:9328549/140‑1 (MQ=255) tctGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACAT‑‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAAt < 1:4830427/140‑1 (MQ=255) ggATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACAT‑‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGTTATCCGCCCGCCGCGGCCGCCAGTACTCCCGACGCGCCCCGCCCCCCATcca > 2:1964574/1‑138 (MQ=255) ggATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACAT‑‑CCCCCCCCGGACGGGAATCGAGCTGCTGACCGCGGATATCCGCCAGCATCTGACGCCCGGACTCACGACGCGCCCCGCCCCCACTCaa > 1:2587981/1‑140 (MQ=255) cgccgcGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACAT‑‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCAACGTaa < 1:2452780/140‑1 (MQ=255) gccgcGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCAAC‑‑CTCCCGCCCCGTACGGTACTCGCGCTGCTGACCGCTGAGAGGCGCCCGGATCTGTCGCGAGTCCGCACTAGGCGCGCCGCCCCCGAGCAACGGAac > 2:6849555/1‑140 (MQ=255) ctcggcgcCAGCCTTCCTGCGCCCACTGCCGGCCCCACA‑‑ACCCCCCCCTTACGGAAATCGACCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCCCCCCGCCCCCCAACACCGTAACACTTTg < 2:7719539/136‑1 (MQ=255) ctCTGCGCCAGCCTTGCTGCGCCCAGTGNTGGCCCCACAT‑‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCAACGTAACACTTTg < 1:5881574/139‑1 (MQ=255) aTCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACAT‑‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCAACGTAACACTTTg < 1:3871701/140‑1 (MQ=255) aTCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACAT‑‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCAACGTAACACTTTg < 2:8428422/140‑1 (MQ=255) aTCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACAT‑‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCAACGTAACACTTTg < 1:4810379/140‑1 (MQ=255) tCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACAT‑‑CCCCCCCCGTCCGGTAATCGTGCTGCTGACCGCTGAGATCCGCCAGCATCTGACGCCCGTACTCAGTAGGCGCCCCGCCCCCAATCAGCGTGAGACTTTgg > 2:5236822/1‑139 (MQ=255) cAGCCTTGCTGCGCCCAGTGCTGGCCCCACAT‑‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCAACGTAACACTTTGCGGTTTaa < 1:3927732/140‑1 (MQ=255) gCCTTGCTGCGCCCAGTGCTGGCCCCACAT‑‑CCCGCCCCGTCCGGGAAGCGAGCTGCTGACCGCTGATAGCCGCCGGCTGCTGACGCCAGTAGTCTCTACGCGCCCCGCCCCCAATCAACGTACCCCGTTGCgggggcagc > 2:10235818/1‑133 (MQ=255) ccTTGCTGCGCCCAGTGCTGGCCCCACAT‑‑CCCCCCCCGTACGGTAATCGTGCTGCTGGCCGGGGATATCCGGCAGCTGCGGACGGCAGGTCGCTCTACGCGCCCCGCCCCCACTCAACGGTAAACGTTGCGGtgtgattc > 2:5467524/1‑133 (MQ=255) ccTTGCTGCGCCCAGTGCTGGCCCCACAT‑‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGTTATCCGCCAGCATCTGACGCCAGTTCTCACGACGCGCCCCGCCCCCAATCAACGGGACACTGTGCGGTTTAGTAc > 1:3895575/1‑140 (MQ=255) cTTGCTGCGCCCAGTGCTGGCCCCACAT‑‑‑CCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCAACGTAACACTTTGCGGTTTAATACCg < 1:4028910/140‑1 (MQ=255) ttGCTGCGCCCAGTGCTGGCCCCACAT‑‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCAACGTAACACTTTGCGGTTTAATACCg < 1:4971268/140‑1 (MQ=255) gctgcGCCCAGTGCTGGCCCCACAT‑‑CCCCCCCCGTTCGGTACTCGAGCTGCTGGCCGCTGTTATCCGCCAGCCGCGGACGCCAGGACTCACTACGCGCCCCGCCCCCAAGCAACGTAACACGTTGCGGTGTAATACCGCa > 2:3927783/1‑140 (MQ=255) gctgcGACCAGTGCTGGCCCCACAT‑‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCGGATATCCGCCAGCATCTGACGCCAGTACTCCCTACGCGCCCCGCCCCCAAGCCACGTTACACTGTGCGGGTTAATACCGCa > 2:10124220/1‑140 (MQ=255) gcgcCCAGTGCTGGCCCCACAT‑‑CCCCCCCCGTCCGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCGTCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAAGCAACGTAACACTTTGCGGTTTTATACCGCAGGc > 1:5445198/1‑140 (MQ=255) gcgcCCAGTGCTGGCCCCAC‑‑CTCCCCCCCCGTACGGTAATCGAGCTGCTGTCCGCTGAGATCCGCCAGCATCTGACGCCAGTACGCACTACGCGCCCCGCCCCCAATCAACGTTACACGTTGCGGGTTAATACCGCAGGc > 1:5443838/1‑140 (MQ=255) cccAGTGCTGGCCCCACGT‑‑GCCCCCCCGTTCGGTAATCGGGCTGCTGACCGCTGGTATGCGCCAGCGTCTGGCGCCAGGTCTCCCTGCGCGCCGCGCCCCCAATCAACGTAACACTTTGCGGGTTATTAGCGCTGGCagg > 2:2080477/1‑138 (MQ=255) cccAGTGCTGGCCCCACAT‑‑CCCCCCCCGTGCGGTAATCGAGCTGCTGACCGCGGATATCCGCCAGCCTCTGACGCCCGTACTCACTACGCGCCCCGCCCCCAAGCAACGTTACACTTTGCGGTTTAATACCGCAGGCATg > 1:1553167/1‑140 (MQ=255) cccAGTGCTGGCCCCACAT‑‑CCCCCCCCGTACGGTCATCGTGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCAACGTGACACGTTGCGGTTTAATACCGCAGGCGTg > 1:9659871/1‑140 (MQ=255) cccAGTGCTGGCCCCACAT‑‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGGACGCACTACGCGCCCCGCCCCCCATGAGCGTAACACTTTGCGGTTTAATACCGCAGGCCTg > 2:6544597/1‑140 (MQ=255) cccAGTGCTGGCCCCACAT‑‑CCCCCCCCGTACGGGAATCGAGCGGCTGGCCGCTGATATCCGCCAGCGTCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCGACGTAACCCTTTGCGGTTTAGTACCCCAGGCATg > 1:363892/1‑140 (MQ=255) cccAGTGCTGGCCCCACA‑‑GCCCCCCCCGGACGGTCATCGAGCTGCTGACCGCTGGTATCCGCCCGCATCTGACGCCCGTACTCACTACGCGCCCCGCCCCCCATCAACGGACCACTTTGCGGGTTAGTACCGCAGGCATg > 1:3051454/1‑140 (MQ=255) cccAGTGCTGGCCCCAC‑‑CTGCCCCCCCGTACGGTCATCGCGCTGCTGGCCGGGGATATCCGCCAGCATCTGGCGGCAGTAGTCACTACGCGCCCCGCCCCCCATCAACGGAACACTTTGCGGTTTATTACCGCAGGCATg > 1:1553058/1‑140 (MQ=255) cccAGTGCTGGCCCCAC‑‑CTCCCCCCCCGTACGGTAATCGAGCTGCTGTCCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCACTCAACGGAACACTGTGCGGTTTAATACCGCAGGCATg > 1:7103883/1‑140 (MQ=255) aGTGCTGGCCCCACAT‑‑CCCCCCCCGTACGGTACTCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCAACGTAACACTTTGCGGTTTAATACCGCAGGCATGCAc < 1:4392311/140‑1 (MQ=255) aGTGCTGGCCCCACAT‑‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCAACGTAACACTTTGCGGTTTAATACCGCAGGCATGCAc < 1:1232114/140‑1 (MQ=255) tGCTGGCCCCACAT‑‑CCCCCCCCGGACGGTAATCGAGCTGCGGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACGACGCGCCCCGCCCCCAATCCACGGCACTCTTTGCGGGTTAATTCCGCCGGCATGCACgg > 1:1815184/1‑139 (MQ=255) gCCCCACAT‑‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCAACGTAACACTTTGCGGTTTAATACCGCAGGCATGCACGACATcc > 1:10205080/1‑140 (MQ=255) gCCCCACAT‑‑CCCCCCCCGTACGGTAATCGAGCTGCGGACCGCTGATATCCGCCAGCAGCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCAACGTAACACTTTGCGGTTTAAGACCGCAGGCATGCACGACAGcc > 1:7156330/1‑140 (MQ=255) ccccACAT‑‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCAACGTAACACTTTGCGGTTTAATACCGCAGGCATGCACGACATCCa < 1:445244/140‑1 (MQ=255) ccccACAT‑‑CCCCCCCCGTACGGGACTCGAGCAGCGGACCGCTGATCTCCGCCAGCATCTGCCGCCAGTACGCACTACGCGCCCCGCCCCCAATCAACGTAACACTTTGCGGTTTAAGACCGCAGGCATGCACGCCATCCa < 2:5977925/140‑1 (MQ=255) ccccccacccccccccGACCGGTAAGCGAGCGGCTGCCCCCGCAGATCCGCCAGCATCAGACGCCAGAACTCACTACGCGCCCCGCCCCCAATCAACGTCACACTTTGCGCTTAACCACCGCAGGCAAGCACGACAGCCa < 2:10763796/133‑1 (MQ=255) || GGCTGATAAGCGGCATAACGCTGCGCATCTGGTAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACATCCCCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCAACGTAACACTTTGCGGTTTAATACCGCAGGCATGCACGACATCCA > NZ_CP025268/3728661‑3728933 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |