| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP025268 | 1,629,176 | (T)7→8 | pseudogene (141/392 nt) | ydeI ← | YdeI family stress tolerance OB fold protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP025268 | 1,629,169 | 1 | . | T | 95.4% | 1025.5 / 34.7 | 283 | pseudogene (148/392 nt) | ydeI | YdeI family stress tolerance OB fold protein |
| Reads supporting (aligned to +/- strand): ref base . (1/12); new base T (73/197); total (74/209) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.95e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 298 total aligned reads displayed.
ACGGCCGCAGGAATAACGACATTAATTTCACCGCTCTTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CA‑TTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCAACGCATAAGGCATGACAAGAAAACTTGCTAATACAA > NZ_CP025268/1629031‑1629300 | gCCGCAGGAATAACGACATTAATATCACCGCTCTTATCGCGAAAAAAGAAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCTTGCATGGTTTTTGCGAAATCAACGGT‑CA‑ttt‑t > 1:8499701/1‑140 (MQ=255) cGCAGGAATAACGACATTAATTTCACCGCTCTTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CA‑ttt‑tt‑t > 1:2625251/1‑140 (MQ=255) cAGGAATAACGACATTAATTTCACCGCTCTTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CA‑ttt‑tt‑t‑tt > 2:5129434/1‑139 (MQ=255) ggAATAACGACATTAATTTCACCGCTCTTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CA‑ttt‑tt‑t‑ttgc < 2:10008316/140‑4 (MQ=255) aaCGACATTAATTTCACCGCTCTTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGACGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTTT‑TT‑T‑TGcatcat < 2:10108287/140‑1 (MQ=255) aaCGACATTAATTTCACCGCTCTTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTTT‑TT‑T‑TGcatcat > 1:1015089/1‑140 (MQ=255) aaCGACATTAATTTCACCGCTCTTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTTT‑TT‑T‑TGcatcat < 1:9143543/140‑1 (MQ=255) aaCGACATTAATTTCACCGCTCTTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTTT‑TT‑T‑TGcatcat < 1:8776167/140‑1 (MQ=255) aaCGACATTAATTTCACCGCTCTTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTTT‑TT‑T‑TGcatcat < 1:5693796/140‑1 (MQ=255) aaCGACATTAATTTCACCGCTCTTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTTT‑TT‑T‑TGcatcat < 1:10471567/140‑1 (MQ=255) aTTAATTTCACCGCTCTTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTTT‑TT‑T‑TGCATCATCGGTTc > 1:9544858/1‑140 (MQ=255) aTTAATTTCACCGCTCTTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTTT‑TT‑T‑TGCATCATCGGTTc < 1:476604/140‑1 (MQ=255) aTTTCACCGCTCTTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTTT‑TT‑T‑TGCATCATCGGTTCcgcg < 2:1543310/140‑1 (MQ=255) tttCACCGCTCTTATCGCGAACAACGTACCGGTCCTCTCCTTTGGGAGAAATCAAATTACCGCGTAGTGAAACCGCAGCGCCATCGTGCATGGTGTTTGCGAAATCAACGGT‑CATTTT‑TT‑T‑TGCATCATCGGTTCCGCGa < 2:8120814/140‑1 (MQ=255) tttCACCGCTCTTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTTT‑TT‑T‑TGCATCATCGGTTCCGCGa < 1:552352/140‑1 (MQ=255) tCACCGCTCTTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CA‑TTT‑TT‑T‑TGCATCATCGGTTCCGCGATAg < 1:4142225/140‑1 (MQ=255) cACCGCTCTTATCGCGACAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGACACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAg < 2:7494518/140‑1 (MQ=255) cACCGCTCTTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAg < 2:6756128/140‑1 (MQ=255) ccGCTCTTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAGATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGcc < 1:7024431/140‑1 (MQ=255) ccGCTCTTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGcc < 1:5277181/140‑1 (MQ=255) ccGCTCTTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGcc < 2:9426310/140‑1 (MQ=255) ccGCTCTTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGcc < 2:2953403/140‑1 (MQ=255) tctTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCAtct < 1:6372394/140‑1 (MQ=255) aTCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTa > 2:8637287/1‑140 (MQ=255) gAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCa < 2:5995960/140‑1 (MQ=255) cGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAggc > 2:10126115/1‑140 (MQ=255) cGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAggc < 1:3600656/140‑1 (MQ=255) aaCGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAggcggc < 1:5660794/140‑1 (MQ=255) aCGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGgcggcg < 1:9821964/140‑1 (MQ=255) gTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTg < 1:4971955/140‑1 (MQ=255) gTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTg < 2:3090745/140‑1 (MQ=255) gTCCTCTCCTTTGAGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTg < 2:7251980/140‑1 (MQ=255) tCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTgg > 2:9216352/1‑140 (MQ=255) ccTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGgc < 1:1938186/140‑1 (MQ=255) ccTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CA‑TTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGgcg < 1:778220/140‑1 (MQ=255) ctctCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGgcg < 1:821010/140‑1 (MQ=255) ctcCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCt > 2:5075249/1‑140 (MQ=255) ctcCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCt < 1:3948033/140‑1 (MQ=255) tcCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTg < 2:2717325/140‑1 (MQ=255) tcCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTg < 1:10350123/140‑1 (MQ=255) tcCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTg > 1:9683870/1‑140 (MQ=255) tttGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CA‑TTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATc < 2:1053318/140‑1 (MQ=255) ttGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATc < 1:6897252/140‑1 (MQ=255) ttGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATc < 1:5957019/140‑1 (MQ=255) ttGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATc < 1:8122335/140‑1 (MQ=255) ttGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATc > 2:233476/1‑140 (MQ=255) tgtgAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGcc < 2:6076960/103‑1 (MQ=255) tgtgAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATcc < 1:2475961/140‑1 (MQ=255) tgtgAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATcc > 2:1679149/1‑140 (MQ=255) tgtgAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATcc > 1:10064507/1‑140 (MQ=255) tgtgAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATcc > 2:7006743/1‑140 (MQ=255) agaAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGtt > 2:7597429/1‑140 (MQ=255) agaAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGtt > 1:4247973/1‑140 (MQ=255) agaAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGtt > 2:7343908/1‑140 (MQ=255) aaTCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTa > 2:3581502/1‑140 (MQ=255) aaTCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTa > 2:6675121/1‑140 (MQ=255) tCAAATTACCGCGTAGTGAAACCGCAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTaaa < 1:1429196/140‑1 (MQ=255) tCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTaaa < 1:544610/140‑1 (MQ=255) tCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTaaa < 2:10593910/140‑1 (MQ=255) tCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTaaa < 2:1131507/140‑1 (MQ=255) tCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CA‑TTTATT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCAATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTaaa < 2:9071484/140‑1 (MQ=255) tCAAATTACCGCGTAGTGAAACCGAAGCGCCATCCTGCATGGTTTTTGCGAAATAAACGGT‑CATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTaaa < 2:407942/140‑1 (MQ=255) aCCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCt < 1:784233/140‑1 (MQ=255) cgcgTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTgg < 1:2269199/140‑1 (MQ=255) gcgTAGTGAAACCGAAGCGCCATCGTTCATGGTTTTTGCGAAATCAACGGT‑CATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGt < 1:6100928/140‑1 (MQ=255) cgTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCAGGTc > 2:10753541/1‑140 (MQ=255) tAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCAt > 1:2921444/1‑140 (MQ=255) tAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCAt > 2:629515/1‑140 (MQ=255) tGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTg > 2:4470105/1‑140 (MQ=255) aaCCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCa < 2:3217698/140‑1 (MQ=255) aaCCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCa < 2:9570780/140‑1 (MQ=255) aaCCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCa < 2:8364993/140‑1 (MQ=255) aaCCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCa < 2:4955896/140‑1 (MQ=255) taGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTTT‑TT‑T‑TGCATCATCTGTTCCGCGATTGCCATCTTCTATTGCAAGATGCTGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCAACGCa < 2:4689106/139‑1 (MQ=255) aaGCGCCATCGTGCATGGTTTTTGCGAAATCAACTGT‑CATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCAACGCa < 2:9848776/140‑1 (MQ=255) aaGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCAACGCa < 2:1871564/140‑1 (MQ=255) aaGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCAACGCa < 2:9765012/140‑1 (MQ=255) aaGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCAACGCa < 1:9337383/140‑1 (MQ=255) aaGCGCCATCATGCATGGTTTTTGCGAAATCAACGGT‑CATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCAACGCa < 2:2108573/140‑1 (MQ=255) aGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCAACGCAt < 1:4442616/140‑1 (MQ=255) ccATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCAACGCATAAgg < 1:3206356/140‑1 (MQ=255) tCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCAACGCATAAGGCAt < 2:33532/140‑1 (MQ=255) acGTGCATGGTATTTGCGAAATCAACGGT‑CATTTT‑TT‑T‑TGCATCATCGGTGCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCAACGCATAAGGCAt < 1:7539162/139‑1 (MQ=255) gCATGGTTTTTGCGAAATCAACGGT‑CATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCAACGCATAAGGCATGACa < 1:518236/140‑1 (MQ=255) tttttGCGAAATCAACGGT‑CATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCAACGCATAAGGCATGACAAGaaaa < 1:4819839/140‑1 (MQ=255) tttttGCGAAATCAACGGT‑CATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCAACGCATAAGGCATGACAAGaaaa > 2:3475399/1‑140 (MQ=255) tttttGCGAAATCAACGGT‑CATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCAACGCATAAGGCATGACAAGaaaa < 2:8908217/140‑1 (MQ=255) tttttGCGAAATCAACGGT‑CATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCAACGCATAAGGCATGACAAGaaaa < 1:1679139/140‑1 (MQ=255) tttttGCGAAATCAACGGT‑CATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCAACGCATAAGGCATGACAAGaaaa < 2:10253294/140‑1 (MQ=255) tttttGCGAAATCAACGGT‑CATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCAACGCATAAGGCATGACAAGaaaa < 1:8304871/140‑1 (MQ=255) tttttGCGAAATCAACGGT‑CATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCAACGCATAAGGCATGACAAGaaaa < 1:10918761/140‑1 (MQ=255) tttttGCGAAATCAACGGT‑CA‑TTT‑TTAT‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCAACGCATAAGGCATGACAAGaaaa < 2:10521568/140‑1 (MQ=255) tttgtGCGAAATCAACGGT‑CATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTAGTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCAACGCATAAGGCATGACAAGaaaa < 2:8268581/140‑1 (MQ=255) tttGCGAAATCAACGGT‑CATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCAACGCATAAGGCATGACAAGAAAACt < 1:10627985/140‑1 (MQ=255) ttGCGACATCACCGGTCCT‑TTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCGATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTGTCAACCGCCCTGGTCAACTGCCAACGCATAAGGCATGACAAGAAAACtt < 2:8421032/140‑1 (MQ=255) ttGCGAAATCAACGGT‑CATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGATTCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCAACGCATAAGGCATGACAAGAAAACtt > 2:54299/1‑140 (MQ=255) ttGCGAAATCAACGGT‑CATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCAACGCATAAGGCATGACAAGAAAACtt > 1:6213584/1‑140 (MQ=255) gCGAAATCAACGGT‑CATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCAACGCATAAGGCATGACAAGAAAACTTGc < 1:1883737/140‑1 (MQ=255) gCGAAATCAACGGT‑CA‑TTT‑TT‑TGTGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCAACGCATAAGGCATGACAAGAAAACTTGc < 1:8949513/140‑1 (MQ=255) aaCGGT‑CATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCAACGCATAAGGCATGACAAGAAAACTTGCTAATACaa < 2:375897/140‑1 (MQ=255) | ACGGCCGCAGGAATAACGACATTAATTTCACCGCTCTTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CA‑TTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCAACGCATAAGGCATGACAAGAAAACTTGCTAATACAA > NZ_CP025268/1629031‑1629300 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |