BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NZ_CP025268	1,873,836	(T)_5→6	pseudogene (67/1283 nt)	yeaH →	YeaH/YhbH family protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NZ_CP025268	1,873,831	1	.	T	97.0%	1946.0 / 41.4	535	pseudogene (62/1283 nt)	yeaH	YeaH/YhbH family protein
Reads supporting (aligned to +/- strand): ref base . (14/2); new base T (336/180); total (352/183)
Fisher's exact test for biased strand distribution p-value = 1.05e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 596 total aligned reads displayed.

ACAGCGAACCGTGGGCCTGAGAAGCGGCAACACAGGCGTAGCATACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑G‑TTT‑TTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGTGACTGACGTCGACAGCGGCGAATCCGTATCCATTCCCACGGAAGATATTAGCGAACCGATGTTTCATCA  >  NZ_CP025268/1873697‑1873965

aCAGCGACCCGTGGGCCTGAGACGCGGCAACACAGGCGTAGCATACAGTTGGCACATGGAGTACGGGGGGCAGATGACCTGGTTTATTGACCGGCGTCTGAACGGCACAAACAAAAGCATGGTGAATCGCCAGC‑G‑tgt‑tt                                                                                                                                   >  2:6207023/1‑140 (MQ=255)

aCAGCGAACCGTGGGCCTGAGAAGCGGCAACACAGGCGTAGCATACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑G‑ttt‑tt                                                                                                                                   >  1:9867136/1‑140 (MQ=255)

    cGAACCGTGGGCCTGAGAAGCGGCAACACAGGCGTCGCAGACAGTTGGCAACTGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑G‑ttt‑tttacg                                                                                                                               <  2:7618541/140‑5 (MQ=255)

    cGAACCGTGGGCCTGAGAAGCGGCAACACAGGCGTAGCATACAGGTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTCTTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑G‑ttt‑tttacg                                                                                                                               <  2:9405012/140‑5 (MQ=255)

     gAACCGTGGGCCTGAGAAGCGGCAACACAGGAGGAGCATACAGTTGGCAAATGTATTACGGGGGGCCTAAGCCATGGGTTATTGTCCGGCGTGTGAACGGCACAGACAAAAGCTGGGTGAGTCGGCAGC‑G‑gtt‑tgtgcgg                                                                                                                              >  2:6383821/1‑134 (MQ=255)

      aaCCGTGGGCCTGAGAAGCGGCAACACAGGCGTAGCATACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTTT‑TTACGcc                                                                                                                              >  1:5524948/1‑140 (MQ=255)

           tGGGCCTGAGAAGCGGCAACACAGGCGTAGCATACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTTT‑TTACGCCGTtat                                                                                                                         >  1:8028995/1‑140 (MQ=255)

             ggCCTGAGAAGCGGCAACACAGGCGTAGCATACAGGTGGCAAATGTCGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTTT‑TTACGCCGTTATaa                                                                                                                       >  2:992374/1‑140 (MQ=255)

                cTGAGAAGCGGCAACACAGGCGTAGCATACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTTT‑TTACGCCGTTATAAAgc                                                                                                                    <  1:5088343/140‑1 (MQ=255)

                   agaAGCGGCAACACAGGCGTAGCATACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTTT‑TTACGCCGTTATAAAGCGCa                                                                                                                 >  1:682014/1‑140 (MQ=255)

                        cGGCAACACAGGCGTAGCATACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTTT‑TTACGCCGTTATAAAGCGCAAATTa                                                                                                            >  1:3757936/1‑140 (MQ=255)

                         ggCCACACAGGCGTAGCATACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGACTCGCCAGC‑GTTTT‑TTACGCCGTTATAAAGCGCAAATTaa                                                                                                           >  2:131871/1‑140 (MQ=255)

                         ggCAACACAGGCGTAGCATACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑G‑ttt‑ttta                                                                                                                                 >  1:2498123/1‑115 (MQ=255)

                          gCAACACAGGCGTAGCATACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTTT‑TTACGCCGTTATAAAGCGCAAATTaaa                                                                                                          >  2:5038593/1‑140 (MQ=255)

                          gCAACACAGGCGTAGCATACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTTT‑TTACGCCGTTATAAAGCGCAAATTaaa                                                                                                          <  1:56609/140‑1 (MQ=255)

                          gCAACACAGGCGTAGCATACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTTT‑TTACGCCGTTATAAAGCGCAAATTaaa                                                                                                          >  1:3036961/1‑140 (MQ=255)

                          gCAACACAGGCGTAGCATACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑G‑ttt‑t                                                                                                                                    <  1:963372/113‑1 (MQ=255)

                             acacAGGCGTAGCATACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTTT‑TTACGCCGTTATAAAGCGCAAATTAAACAg                                                                                                       >  1:5426640/1‑140 (MQ=255)

                                caGGCGTAGCATACAGTTGTCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGTCCGGCGACTGAACGGCAAAAACAAAAGCAGGGTGAATCGCCAGC‑GTTTT‑TTACGCCGTTATAAAGCGCAAATTAAACAGTCg                                                                                                    <  2:863544/140‑1 (MQ=255)

                                caGGCGTAGCATACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTTT‑TTACGCCGTTATAAAGCGCAAATTAAACAGTCg                                                                                                    <  2:5325391/140‑1 (MQ=255)

                                   gCGTAGCATACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTTT‑TTACGCCGTTATAAAGCGCAAATTAAACAGTCGAtc                                                                                                 >  1:10018591/1‑140 (MQ=255)

                                       aGCATACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTTT‑TTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCg                                                                                             <  1:6636263/140‑1 (MQ=255)

                                        gCATACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTTT‑TTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGa                                                                                            >  1:231906/1‑140 (MQ=255)

                                        gCATACAGTTGGCAAATGTAGTACGGGGGGCATATAACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTTT‑TTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGa                                                                                            <  1:10574057/140‑1 (MQ=255)

                                         cATACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTTT‑TTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAg                                                                                           >  2:2518384/1‑140 (MQ=255)

                                         cATACAGTTGGCAAATGTAGGACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCTCCAGC‑GTTTT‑TTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAg                                                                                           >  1:1391478/1‑140 (MQ=255)

                                          aTACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTTT‑TTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAgg                                                                                          <  2:3609987/140‑1 (MQ=255)

                                          aTACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTTT‑TTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAgg                                                                                          <  1:4404594/140‑1 (MQ=255)

                                          aTACAGTTGGCAAATGGAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTTT‑TTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAgg                                                                                          <  2:8407181/140‑1 (MQ=255)

                                           tACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTTT‑TTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGc                                                                                         >  2:3916645/1‑140 (MQ=255)

                                             cAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTTT‑TTACGCCGTTATAAAGCNCAAATTAAACAGTCGATCTCCGAGGCCa                                                                                       >  1:5875242/1‑140 (MQ=255)

                                             cAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTTT‑TTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGccg                                                                                       >  2:8021072/1‑139 (MQ=255)

                                             cAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTTT‑TTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCa                                                                                       >  1:5202260/1‑140 (MQ=255)

                                             cAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTTT‑TTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCa                                                                                       >  1:6035064/1‑140 (MQ=255)

                                             cAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTTT‑TTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCa                                                                                       >  2:8274676/1‑140 (MQ=255)

                                             cAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTTT‑TTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCa                                                                                       >  1:8992199/1‑140 (MQ=255)

                                                ttGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTTT‑TTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATta                                                                                    >  2:5529906/1‑140 (MQ=255)

                                                  ggCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTTT‑TTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAgg                                                                                          >  1:6217531/1‑132 (MQ=255)

                                                  ggCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTTT‑TTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATtact                                                                                  >  1:7590972/1‑138 (MQ=255)

                                                  ggCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTTT‑TTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATtaat                                                                                  >  2:3114949/1‑140 (MQ=255)

                                                  ggCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTTT‑TTACGCCGGTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATtcat                                                                                  >  1:10378829/1‑140 (MQ=255)

                                                   gCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTTT‑TTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATtaata                                                                                 >  2:1051510/1‑140 (MQ=255)

                                                   gCAAATGGAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTTT‑TTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATtaata                                                                                 >  2:10738764/1‑140 (MQ=255)

                                                        tGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGATCTGCAAAAACAAAAGCATGGTGATTCGCCAGC‑GTTTT‑TTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGt                                                                            <  1:8403226/140‑1 (MQ=255)

                                                        tGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTTT‑TTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGt                                                                            >  2:4838842/1‑140 (MQ=255)

                                                          tagtaCGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTTT‑TTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTc                                                                          >  1:334977/1‑140 (MQ=255)

                                                             taCGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAATGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTTT‑TTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGt                                                                       <  1:50312/140‑1 (MQ=255)

                                                             taCGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTTT‑TTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGt                                                                       >  2:5969170/1‑140 (MQ=255)

                                                             taCGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTTT‑TTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGt                                                                       >  1:2798861/1‑140 (MQ=255)

                                                             taCGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTTT‑TTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGt                                                                       >  2:2153149/1‑140 (MQ=255)

                                                               cGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTTT‑TTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGtga                                                                     <  1:8274676/140‑1 (MQ=255)

                                                                 gggggCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTTT‑TTACGCCGTTATAAAgc                                                                                                                    >  2:663206/1‑91 (MQ=255)

                                                                 gggggCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTTT‑TTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGtgact                                                                   <  1:1897430/140‑1 (MQ=255)

                                                                  ggggCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTTT‑TTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGtgactg                                                                  >  2:3425333/1‑140 (MQ=255)

                                                                  ggggCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTTT‑TTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGtgactg                                                                  >  2:7359147/1‑140 (MQ=255)

                                                                  ggggCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTTT‑TTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGtgactg                                                                  <  1:3587003/140‑1 (MQ=255)

                                                                  ggggCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GATTT‑TTACGCCGTTATAAAGCGCAAATTAAACAGTCGAGCTCCGAGGCCATTACGAAGCGTTCGGtgccgg                                                                  >  2:8471720/1‑136 (MQ=255)

                                                                   gggCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCCAACACAAAAGCATGGTGAATCGCCAGC‑GTTTT‑TTACGCCGTTTTAAAGCGCAAATTACACATTCGAGCTCCGAGGCCATTAATTCGCGTTCGGtgactga                                                                 >  2:9146256/1‑140 (MQ=255)

                                                                    ggCATATGACCTGGTTTATTGACCGGCGTCTGAACTGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTTT‑TTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCTTTCGGtgactgac                                                                >  2:5690854/1‑140 (MQ=255)

                                                                    ggCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAATACAAAAGATTGGTGAATCGCCAGC‑GTTTT‑TTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGtgactggc                                                                >  2:1506722/1‑138 (MQ=255)

                                                                    ggCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTTT‑TTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGtgactgac                                                                >  2:980570/1‑140 (MQ=255)

                                                                    ggCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTTT‑TTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGtgactgac                                                                >  1:1733802/1‑140 (MQ=255)

                                                                     gCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTTT‑TTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGTGACTGACg                                                               <  1:2153149/140‑1 (MQ=255)

                                                                      cATATGACCTGGTTTATTGACCGGCGTCTGAACGGCTAAAACAATAGCATGGTGACTCGCCAGC‑G‑TTTGTTACGGCGTTATAAAGCGCCACTTATAAAGTCGATCTCCGAGGCCATTCATAAGCGTTCGGTGACTGACGt                                                              >  2:4580007/1‑140 (MQ=255)

                                                                      cATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTTT‑TTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGTGACTGACGt                                                              >  2:5162517/1‑140 (MQ=255)

                                                                       atatGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTTT‑TTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGTGACTGACGTc                                                             >  1:10903501/1‑140 (MQ=255)

                                                                       atatGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTTT‑TTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGTGACTGACGTc                                                             >  2:10187796/1‑140 (MQ=255)

                                                                       atatGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTTT‑TTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGTGACTGACGTc                                                             >  1:6426592/1‑140 (MQ=255)

                                                                         atGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTTT‑TTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGTGACTGACGTCGa                                                           >  1:10746153/1‑140 (MQ=255)

                                                                            aCCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTTT‑TTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGTGACTGACGTCGACAg                                                        >  2:5379592/1‑140 (MQ=255)

                                                                            aCCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTTT‑TTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCAGTAATAAGCGTTCGGTGACTGACGTCGACAg                                                        >  1:10228381/1‑140 (MQ=255)

                                                                              cTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTTT‑TTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGTGACTGACGTCGACAgcg                                                      >  1:6966073/1‑140 (MQ=255)

                                                                                 gTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTTT‑TTACGCCGTTATAAAGCGCAAATTAAACAGTTGATCTCCGAGGCCATTAATAAGCGTTCGGTGACTGACGTCGACAgcggcg                                                   >  1:7731936/1‑140 (MQ=255)

                                                                                 gTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTTT‑TTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGTGACTGACGTCGACAgcggcg                                                   >  1:7224039/1‑140 (MQ=255)

                                                                                 gTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTTT‑TTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGTGACTGACGTCGACAgcggcg                                                   >  2:7730409/1‑140 (MQ=255)

                                                                                      ttGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTTT‑TTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGTGACTGACGTCGACAGCGGCGAATcc                                              >  1:9394752/1‑140 (MQ=255)

                                                                                      ttGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTTT‑TTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGTGACTGACGTCGACAGCGGCGAATcc                                              <  1:2868851/140‑1 (MQ=255)

                                                                                      ttGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGAGAATCGCCAGC‑GTTTT‑TTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGTGACTGACGTCGACAGCGGCGAATcc                                              >  2:1210221/1‑140 (MQ=255)

                                                                                       tGACCGGCGTCTGAACGGCAAATTCAATCGCATGGTGAATCGCCAGCGG‑TGT‑TTACGCGGGTATAAAGCGCAAATTATCCCGTCGCTCTCCGAGGCCATTAAGCTGGGTTCGGTGACTGTGGTCGAGCGAGGCGaagcgg                                             >  2:10389543/1‑136 (MQ=255)

                                                                                       tGACCGGCGTCTGAACCGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTTT‑TTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAg                                                                                           >  2:6860086/1‑94 (MQ=255)

                                                                                           cGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTTT‑TTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGTGACTGACGTCGACAGCGGCGAATCCGTATc                                         >  1:3485973/1‑140 (MQ=255)

                                                                                           cGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTTT‑TTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGGTCGGTGACTGACGTCGACAGCGGCGAATCCGTATc                                         >  2:4090316/1‑140 (MQ=255)

                                                                                                tCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTTT‑TTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGTGACTGACGTCGACAGCGGCGAATCCGTATCCATTc                                    >  2:2288829/1‑140 (MQ=255)

                                                                                                   gAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTTT‑TTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGTGACTGACGTCGACAGCGGCGAATCCGTATCCATTCCCa                                 <  1:9156127/140‑1 (MQ=255)

                                                                                                   gAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTTT‑TTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGTGACTGACGTCGACAGCGGCGAATCCGTATCCATTCCCa                                 <  1:4887531/140‑1 (MQ=255)

                                                                                                       tgCAAAACCAAAAGCATGGTGAATCGCCATC‑GTTTT‑TTACGCATTTATAAAGCGCAAATTAAACATTCGATCTCCGAGGCCATTAATAAGCGATCGGTGACTGACGTCGACAGAGGCGAATACGTATCAATTCCCACGGa                             <  2:7466879/139‑1 (MQ=255)

                                                                                                        gCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTTT‑TTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGTGACTGACGTCGACAGCGGCGAATCCGTATCCATTCCCACGGaa                            <  2:1707870/140‑1 (MQ=255)

                                                                                                         cAAAAACAAAAGCATGGTGAATCGCCAGC‑GTTTT‑TTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGTGACTGACGTCGACAGCGGCGAATCCGTATCCATTCCCACGGAAg                           >  2:6040940/1‑140 (MQ=255)

                                                                                                              aCAAAAGCATGGTGAATCGCCAGC‑GTTTT‑TTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGTGACTGACGTCGACAGCGGCGAATCCGTATCCATTCCCACGGAAGATAtt                      >  1:7427673/1‑140 (MQ=255)

                                                                                                               cAAAAGCATGGTGAATCGCCAGC‑GTTTT‑TTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGTGACTGACGTCGACAGCGGCGAATCCGTATCCATTCCCACGGAAGATATTa                     <  2:2941973/140‑1 (MQ=255)

                                                                                                                 aaaGCATGGTGAATCGCCAGC‑GTTTT‑TTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGTGACTGACGTCGACAGCGGCGAATCCGTATCCATTCCCACGGAAGATATTAGc                   <  1:4481468/140‑1 (MQ=255)

                                                                                                                      aTGGTGAATCGCCAGC‑GTTTT‑TTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGTGACTGACGTCGACAGCGGCGAATCCGTATCCATTCCCACGGAAGATATTAGCGAAcc              <  1:46924/140‑1 (MQ=255)

                                                                                                                       tGGTGAATCGCCAGC‑GTTTT‑TTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGTGACTGACGTCGACAGCGGCGAATCCGTATCCATTCCCACGGAAGATATTAGCGAACCg             <  1:8651616/140‑1 (MQ=255)

                                                                                                                        ggTGAATCGCCAGC‑GTTTT‑TTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGTGACTGACGTCGACAGCGGCGAATCCGTATCCATTCCCACGGAAGATATTAGCGAACCGa            >  2:4393469/1‑140 (MQ=255)

                                                                                                                         gTGAATCGCCAGC‑GTTTT‑TTACGCAGTTATAAAGCGCAAATTTAACAGTCGATCTCCGAGGCCATTTATAAGCGTTCGGTGACTGAAGTCTACAGCGTCGAATCCGTATACATTCCCACGGAAGATATTAGAGAACCGAt           <  2:7177820/140‑1 (MQ=255)

                                                                                                                          tGAATCGCCAGC‑GTTTT‑TTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGTGACTGACGTCGACAGCGGCGAATCCGTATCCATTCCCACGGAAGATATTAGCGAACCGATg          >  1:4059372/1‑140 (MQ=255)

                                                                                                                           gAATCGCCAGC‑GTTTT‑TTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGTGACTGACGTCGACAGCGGCGAATCCGTATCCATTCCCACGGAAGATATTAGCGAACCGATGt         <  1:8488544/140‑1 (MQ=255)

                                                                                                                           gAATCGCCAGC‑GTTTT‑TTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGTGACTGACGTCGACAGCGGCGAATCCGTATCCATTCCCACGGAAGATATTAGCGAACCGATGt         <  2:1892825/140‑1 (MQ=255)

                                                                                                                             aTCGCCAGC‑GTTTT‑TTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGTGACTGACGTCGACAGCGGCGAATCCGTATCCATTCCCACGGAAGATATTAGCGAACCGATGttt       <  2:9231975/140‑1 (MQ=255)

                                                                                                                               cGCCAGC‑GTTTT‑TTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATGAATAAGCGGTCGGTGACTGACGTCGACAGCGGCGAATCCGTATCCATTCCCACGGAAGCTATTAGCGAACCGATGTTtca     >  1:1546942/1‑140 (MQ=255)

ACAGCGAACCGTGGGCCTGAGAAGCGGCAACACAGGCGTAGCATACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑G‑TTT‑TTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGTGACTGACGTCGACAGCGGCGAATCCGTATCCATTCCCACGGAAGATATTAGCGAACCGATGTTTCATCA  >  NZ_CP025268/1873697‑1873965

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`