| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP025268 | 1,879,869 | (C)5→6 | pseudogene (521/821 nt) | nimR ← | DNA‑binding transcriptional regulator NimR |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP025268 | 1,879,864 | 1 | . | C | 97.0% | 1681.5 / 39.4 | 497 | pseudogene (526/821 nt) | nimR | DNA‑binding transcriptional regulator NimR |
| Reads supporting (aligned to +/- strand): ref base . (8/7); new base C (232/249); total (241/256) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.96e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 570 total aligned reads displayed.
CCTTTCACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATG‑C‑CCC‑C‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAACAGGACCTGAATTAATCTGCGGG > NZ_CP025268/1879726‑1879998 | ccTTTCACTAATCCCTGAAGCGCCATACTCAGCTGTAACGGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTCTCAGTCGGGCAAGATAGCGGTCACTCATCGCTAAAAAGCCAGCCCATAGCCCCAATG‑c > 2:5076720/1‑140 (MQ=255)ccTTTCACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATG‑c > 2:8833258/1‑140 (MQ=255)ccTTTCACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATG‑c > 1:10708186/1‑140 (MQ=255) cTTTCACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATG‑c‑c < 2:8952243/140‑1 (MQ=255) cTTTCACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATG‑c‑c < 1:9916006/140‑1 (MQ=255) cTTTCACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATG‑c‑c < 1:8745825/140‑1 (MQ=255) cTTTCACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATG‑c‑c < 1:5632654/140‑1 (MQ=255) cACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATG‑c‑ccc‑cc > 1:6043847/1‑139 (MQ=255) cACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATG‑c‑ccc‑cc > 2:2866796/1‑139 (MQ=255) aCTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATG‑c‑ccc‑cca < 2:633489/140‑3 (MQ=255) cTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATG‑c‑ccc‑ccac < 1:10852043/140‑4 (MQ=255) cTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATG‑c‑ccc‑ccac > 1:3917180/1‑137 (MQ=255) tCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑CCC‑C‑ACTCGa > 1:9055163/1‑140 (MQ=255) cccTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑CCC‑C‑ACTCGAc < 1:755914/140‑1 (MQ=255) cTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑CCC‑C‑ACTCGACAg < 2:4227919/140‑1 (MQ=255) aGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑CCC‑C‑ACTCGACAGGccc > 2:3783711/1‑140 (MQ=255) cgcCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCCGCCCATTGCCCCAATGCC‑CCC‑C‑ACTCGACAGGCCCtt > 2:7682253/1‑140 (MQ=255) cgcCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑CCC‑C‑ACTCGACAGGCCCtt > 1:9675948/1‑140 (MQ=255) ccATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCCGCCCATTGCCCCAATGCC‑CCC‑C‑ACTCGACAGGCCCTTTc > 2:6550397/1‑140 (MQ=255) ccATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑CCC‑C‑ACTCGACAGGCCCTTTc > 1:3219046/1‑140 (MQ=255) ccATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑CCC‑C‑ACTCGACAGGCCCTTTc > 1:8255356/1‑140 (MQ=255) ccATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑CCC‑C‑ACTCGACAGGCCCTTTc > 1:2333365/1‑140 (MQ=255) cATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAGAGCCAGCCCATTGCCCCAATGCC‑CCC‑C‑ACTCGACAGGCCCTTTCg > 1:4627375/1‑140 (MQ=255) tAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑CCC‑C‑ACTCGACAGGCCCTTTCGcc < 2:1588416/140‑1 (MQ=255) aaacAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑CCC‑C‑ACTCGACAGGCCCTTTCGCca < 2:9720337/137‑1 (MQ=255) aaTCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑CCC‑C‑ACTCGACAGGCCCTTTCGCca < 1:8957978/140‑1 (MQ=255) aaTCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑CCC‑C‑ACTCGACAGGCCCTTTCGCca < 1:4359718/140‑1 (MQ=255) aaTCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑CCC‑C‑ACTCGACAGGCCCTTTCGCca < 1:1733913/140‑1 (MQ=255) tCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑CCC‑C‑ACTCGACAGGCCCTTTCGCcatc < 2:1888102/140‑1 (MQ=255) tCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑CCC‑C‑ACTCGACAGGCCCTTTCGCcatc < 2:3628466/140‑1 (MQ=255) tCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑CCC‑C‑ACTCGACAGGCCCTTTCGCcatc < 1:10178771/140‑1 (MQ=255) tCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑CCC‑C‑ACTCGACAGGCCCTTTCGCcatc < 1:4990510/140‑1 (MQ=255) tCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑CCC‑C‑ACTCGACAGGCCCTTTCGCcatc < 1:642498/140‑1 (MQ=255) tCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGAGTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑CCC‑C‑ACTCGACAGGCCCTTTCGCcatc < 2:6034774/140‑1 (MQ=255) tCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTCTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑CCC‑C‑ACTCGACAGGCCCTTTCGCcatc < 1:6986575/140‑1 (MQ=255) acAGCTGTAACTGCTGACGCCACTGGCGAAACCTCAACCCCGTCTCGTTAACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑CCC‑C‑ACTCGACAGGCCCTTTCGCcatc < 2:2116842/139‑1 (MQ=255) aGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑CCC‑C‑ACTCGACAGGCCCTTTCGCcatcat > 1:7189502/1‑140 (MQ=255) aGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGGCTCTTGTACTATCAGACGGGCAAGATTGCGTTCAATCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑CCC‑C‑ACTCGACAGGCCCTTTCGCcatcat < 2:5299294/140‑1 (MQ=255) tAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑CCC‑C‑ACTCGACAGGCCCTTTCGCCATCATCTcca < 2:3018011/140‑1 (MQ=255) aCTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑CCC‑C‑ACTCGACAGGCCCTTTCGCCATCATCTccacc > 1:8136580/1‑140 (MQ=255) gctgACGCCACTGGCGAAATCTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAATGGCAGCCCATTGCCCGAATG‑CGCCC‑C‑ACTCGTCAGGCCCTTGCGCCAGCATCTcgacccgg > 2:2371401/1‑137 (MQ=255) gctgACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑CCC‑C‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATc > 1:10389652/1‑140 (MQ=255) tgACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑CCC‑C‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGt > 1:8573574/1‑140 (MQ=255) tgACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑CCC‑C‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGt > 1:4106455/1‑140 (MQ=255) tgACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑CCC‑C‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGt > 2:9231558/1‑140 (MQ=255) aCGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑CCC‑C‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGc < 2:8665114/140‑1 (MQ=255) cGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑CCC‑C‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCg > 2:4404582/1‑140 (MQ=255) cGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑CCC‑C‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCg > 2:2677724/1‑140 (MQ=255) aCTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑CCC‑C‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGAtt > 1:5295299/1‑140 (MQ=255) tGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑CCC‑C‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGAtttt > 1:7778946/1‑140 (MQ=255) cGAAAACTCACCCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑CCC‑C‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAgg < 2:9353753/140‑1 (MQ=255) cGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCTAAAAAGCCAGCCCATTGCCCCAATGCC‑CCC‑C‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGAGTTTAgg > 2:10719018/1‑140 (MQ=255) cGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑CCC‑C‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAgg < 1:6552883/140‑1 (MQ=255) cGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑CCC‑C‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAgg < 1:10626889/140‑1 (MQ=255) aaCCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑CCC‑C‑ACTCGACAGGCCCTTTCGCCCTCATCTCCACCATCGTGCGGATTTTCGGATGagaaga > 2:8398485/1‑140 (MQ=255) aaCCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑CCC‑C‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGagaaga > 1:5168673/1‑140 (MQ=255) tctcTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑CCC‑C‑ACTCGACAGGCCCTTTCGCCATCATCTcca > 1:9536216/1‑105 (MQ=255) tctcTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑CCC‑C‑ACTCGACAGGCCCTTTCGCCATCATCTcca < 2:9536216/105‑1 (MQ=255) tctcTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑CCC‑C‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGc < 2:10540080/140‑1 (MQ=255) tctcTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑CCC‑C‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGc < 1:3370988/140‑1 (MQ=255) tctcTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑CCC‑C‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGc > 1:5822643/1‑140 (MQ=255) ctctTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑CCC‑C‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCa > 1:9162854/1‑140 (MQ=255) ctTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑CCC‑C‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAgg < 1:1282376/140‑1 (MQ=255) ttACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑CCC‑C‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGc > 1:3644296/1‑140 (MQ=255) aCTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑CCC‑C‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAg < 1:10010846/140‑1 (MQ=255) aCTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑CCC‑C‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAg < 2:8092155/140‑1 (MQ=255) aCTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑CCC‑C‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAg > 2:4490645/1‑140 (MQ=255) aTCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑CCC‑C‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCtg < 1:8889184/140‑1 (MQ=255) tCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑CCC‑C‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCtgt > 2:1686769/1‑140 (MQ=255) aGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑CCC‑C‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCtgttg > 1:153549/1‑140 (MQ=255) aGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑CCC‑C‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCtgttg > 2:10351518/1‑140 (MQ=255) aGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑CCC‑C‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCtgttg > 2:5638063/1‑140 (MQ=255) gggCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑CCC‑C‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCtgttgttgt > 2:1268026/1‑140 (MQ=255) gggCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑CCC‑C‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCtgttgttgt > 1:453464/1‑140 (MQ=255) ggCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑CCC‑C‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTtgtg < 1:7377805/140‑1 (MQ=255) ggCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑CCC‑C‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTtgtg < 1:4755193/140‑1 (MQ=255) ggCAAGATTGCGGTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑CCC‑C‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTtgtg < 2:3212826/140‑1 (MQ=255) cgCAAGACTTCGTTCACTCATAGCACAAAATCCATCAGAGTCACCCATTG‑C‑CCCAC‑ACTAGACAGGCCCTTTCGCAATCATCTCCACCATAGTGCGGATTTTAGGATTATAAGAAACGGGCAGGTGCAGCTGTTGTtgtg < 1:2023358/139‑1 (MQ=255) cAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑CCC‑C‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGgc < 1:2161073/140‑1 (MQ=255) cAAGATAGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑CCC‑C‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGgc < 2:5897808/140‑1 (MQ=255) ttCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑CCC‑C‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGa < 1:6812612/140‑1 (MQ=255) tCACTCATCGCAAATAAGCCAGCCCATTGCCCCACTGCC‑CCC‑C‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTTTTGTTGTGGCTGCTGAGGGAg < 2:6802485/140‑1 (MQ=255) aCTCATCGCACAAAAGCCAGCCCATTGCCCCAATGCC‑CCC‑C‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAggt > 2:3866215/1‑138 (MQ=255) aCTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑CCC‑C‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGtt > 1:26670/1‑140 (MQ=255) tCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑CCC‑C‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTtcatca > 1:3789336/1‑140 (MQ=255) tCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑CCC‑C‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTtcatca > 2:2561683/1‑140 (MQ=255) cAAAAAAGCCAGCCCATTGCCCCAATGCC‑CCC‑C‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAAc < 2:716947/140‑1 (MQ=255) cagccagccCATTGCCCCAATGCC‑CCC‑C‑ACTCTACAGGCCCTTTCGCCATCATCTCCCCCATCGGGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTTTTTTTGTGGCTGCTGAGGGAGTTCATCAAACAGGAc < 2:4816909/139‑1 (MQ=255) aaGCCAGCCCATTGCCCCAATGCC‑CCC‑C‑CCTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAACAGGAc < 1:6152438/140‑1 (MQ=255) agccagccCATTGCCCCAATGCC‑CCC‑C‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAACAGGAcc > 2:1130249/1‑140 (MQ=255) gccCATTGCCCCAATGCC‑CCC‑C‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAACAGGACCTGAAt < 1:7953667/140‑1 (MQ=255) gccCATTGCCCCAATGCC‑CCC‑C‑ACTCGACAGGCCCTGTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCTTCAAACAGGACCTGAAt > 2:6982616/1‑140 (MQ=255) gccCATTGCCCCAATG‑C‑CCC‑CAACTCGAAATGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTTGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGTCTGCTGAGGGAGTTCATCAATCAGGACCTGAAt < 2:6274237/140‑1 (MQ=255) aTTGCCCCAATGCC‑CCC‑C‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCCTCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAACAGGACCTGAATTAAt < 2:9456268/140‑1 (MQ=255) ttGCCCCAATGCC‑CCC‑C‑ACTCGACAGGCCCTTTCGCCCTCATCTCCACCATCGTGCGGATGTTAGGATGAGAAGACACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAACAGGACCTGAATTAATc > 2:749622/1‑140 (MQ=255) tGCCCCAATGCC‑CCC‑C‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAACAGGACCTGAATTAATCt > 1:9860158/1‑140 (MQ=255) gCCCCAATGCC‑CCC‑C‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAACAGGACCTGAATTAATCTg < 2:3504473/140‑1 (MQ=255) ccccAATGCC‑CCC‑C‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAACAGGACCTGAATTAATCTGc < 1:3012566/140‑1 (MQ=255) ccAATGCC‑CCC‑C‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAACAGGACCTGAATTAATCTGCgg < 2:10613404/140‑1 (MQ=255) cAATGCC‑CCC‑C‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAACAGGACCTGAATTAATCTGCggg > 2:4604837/1‑140 (MQ=255) | CCTTTCACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATG‑C‑CCC‑C‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAACAGGACCTGAATTAATCTGCGGG > NZ_CP025268/1879726‑1879998 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |