| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP025268 | 2,204,490 | (A)7→8 | pseudogene (175/3632 nt) | CXP41_RS11705 → | DUF4132 domain‑containing protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP025268 | 2,204,483 | 1 | . | A | 95.0% | 1911.3 / 75.8 | 528 | pseudogene (168/3632 nt) | CXP41_RS11705 | DUF4132 domain‑containing protein |
| Reads supporting (aligned to +/- strand): ref base . (15/11); new base A (249/249); total (265/263) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.47e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 568 total aligned reads displayed.
ATAACGCCCAACTGGAACTGAAATATAAAAAAGGCAAAACGCCGCTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAG‑‑A‑AA‑AA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGGCGGCGCTAGCCTGTATCGCG > NZ_CP025268/2204344‑2204617 | aTAACGCCCAACTGGAACTGAAATATAAAAAAGGCAAAACGCCGCTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGagaag > 2:1100075/1‑140 (MQ=255) aaCGCCCAACTGGAACTGAAATATAAAAAAGGCAAAACGCCGCTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAgaag‑‑a‑a > 1:5988692/1‑140 (MQ=255) aaCGCCCAACTGGAACTGAAATATAAAAAAGGCAAAACGCCGCTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAgaag‑‑a‑a > 1:6292186/1‑140 (MQ=255) cccAACTGGAACTGAAATATAAAAAAGGCAAAACGCCGCTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAG‑‑a‑aa‑aa‑a > 1:10446945/1‑140 (MQ=255) acAACTGGAACTTAAATATAAAAAAGCCACACCGCCGCTCTGTCATCGTCGCTGGCCGGGCGAACGAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAG‑‑a‑aa‑aa‑a‑a < 2:6765452/139‑1 (MQ=255) aCTGGAACTGAAATATAAAAAAGGCAAAACGCCGCTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAG‑‑a‑aa‑aa‑a‑aaca < 2:3811357/140‑4 (MQ=255) aCTGGAACTGAAATATAAAAAAGGCAAAACGCCGCTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAG‑‑a‑aa‑aa‑a‑aaca > 2:609180/1‑137 (MQ=255) gAACTGAAATATAAAAAAGGCAAAACGCCGCTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGA‑A‑AA‑AA‑A‑ACATTGt > 2:1965052/1‑140 (MQ=255) gAACTGAAATATAAAAAAGGCAAAACGCCGCTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGA‑A‑AA‑AA‑A‑ACATTGt > 2:2456743/1‑140 (MQ=255) aaCTGAAATATAAAAAAGGCAAAACGCCGCTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGA‑A‑AA‑AA‑A‑ACATTGTc > 1:1764947/1‑140 (MQ=255) ataAAAAAGGCAAAACGCCGCTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGA‑A‑AA‑AA‑A‑ACATTGTCTGGCGTTAt < 1:4245156/140‑1 (MQ=255) ataAAAAAGGCAAAACGCCGCTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGA‑A‑AA‑AA‑A‑ACATTGTCTGGCGTTAt > 2:5916175/1‑140 (MQ=255) aaaacaGGCAAAACGCCGCTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGA‑A‑AA‑AA‑A‑ACATTGTCTGGCGTTATga < 2:1795784/140‑1 (MQ=255) aaaaaaGGCAAAACGCCGCTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGA‑A‑AA‑AA‑A‑ACATTGTCTGGCGTTATga < 2:3554521/140‑1 (MQ=255) aaaaaaGGCAAAACGCCGCTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGA‑A‑AA‑AA‑A‑ACATTGTCTCGCGTTATga < 1:10243749/140‑1 (MQ=255) aaaaaGGCAAAACTCCGCTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGA‑A‑AA‑AA‑A‑ACATTGTCTGGCGTTATgag < 2:8113365/140‑1 (MQ=255) aaaaGGCAAAACGCCGCTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGA‑A‑AA‑AA‑A‑ACATTGTCTGGCGTTATgaga > 1:5745015/1‑140 (MQ=255) aaGGCAAAACGCCGCTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGA‑A‑AA‑AA‑A‑ACATTGTCTGGCGTTATGAGAAt > 1:1389394/1‑140 (MQ=255) aaGGCAAAACGCCGCTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGA‑A‑AA‑AA‑A‑ACATTGTCTGGCGTTATGAGAAt > 2:9138369/1‑140 (MQ=255) aaGGCAAAACGCCGCTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGA‑A‑AA‑AA‑A‑ACATTGTCTGGCGTTATGAGAAt > 1:7712044/1‑140 (MQ=255) aGGCAAAACGCCGCTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGA‑A‑AA‑AA‑A‑ACATTGTCTGGCGTTATGAGAAtt < 2:7759337/140‑1 (MQ=255) aGGCAAAACGCCGCTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGA‑A‑AA‑AA‑A‑ACATTGTCTGGCGTTATGAGAAtt < 2:8803129/140‑1 (MQ=255) aaCGCCGCTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGA‑A‑AA‑AA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCAc < 2:7310516/140‑1 (MQ=255) gcTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGA‑A‑AA‑AA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGt > 1:9770715/1‑140 (MQ=255) tCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGTCATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGA‑A‑AA‑AA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTgg < 2:7654867/140‑1 (MQ=255) tCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGA‑A‑AA‑AA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGt > 1:4389246/1‑140 (MQ=255) cATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGA‑A‑AA‑AA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTc < 1:1934368/140‑1 (MQ=255) tcgtcgCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCAGCCCGACCTTGGGTGAGGTAGTGCTACAAAAAGCTGAGAAGT‑A‑AA‑AA‑A‑ACATTGTCTGGCGTTATGAGCAGTTTTCACTGGAGTGGCAGTCCg > 2:1528700/1‑140 (MQ=255) cTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGA‑A‑AA‑AA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCa < 1:6861439/140‑1 (MQ=255) ggCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGA‑A‑AA‑AA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACg > 1:7437538/1‑140 (MQ=255) gCCGGGCGAACCAGTGTCCGTTATCACTNGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGA‑A‑AA‑AA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGc < 1:5885420/140‑1 (MQ=255) gCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGA‑A‑AA‑AA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGc < 2:433695/140‑1 (MQ=255) gggCGAACCAGTGTCCGTTATCACTGGAAGTCTCAGCCAGACATGGGGTGATGAATTGCTACAAAAAGCTGAGAAGA‑A‑AA‑AA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAgg < 2:9281562/140‑1 (MQ=255) gCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGA‑A‑AA‑AA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGcc > 1:2265698/1‑140 (MQ=255) tgtCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGA‑A‑AA‑AA‑A‑ACATTGTCTGGCGTTATGAGaa < 2:10179126/94‑1 (MQ=255) gtCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGA‑A‑AA‑AA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGa < 1:3824319/140‑1 (MQ=255) gtCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGA‑A‑AA‑AA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGa > 2:5346761/1‑140 (MQ=255) gtCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGA‑A‑AA‑AA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGa < 1:9916893/140‑1 (MQ=255) gtCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAG‑‑A‑AA‑AATA‑ACATTGTCTGGAGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGa < 1:337387/140‑1 (MQ=255) gtCCGTTATCACTGGAAGTCTCAACCAGACATTGGGTGAAGAATTGCTACAAACAGCTGAGAAGA‑A‑AA‑AA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCAGCCATCACGCAGGCCATCAACTTGa < 2:5099383/140‑1 (MQ=255) tCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAG‑‑A‑AA‑AA‑ATACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGAt > 2:9768451/1‑140 (MQ=255) cGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAGAAGCTGAGAAGA‑A‑AA‑AA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCg > 1:7951757/1‑140 (MQ=255) gTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGA‑A‑AA‑AA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGcc < 2:6466926/114‑1 (MQ=255) gTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGA‑A‑AA‑AA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATcag < 2:10545424/140‑3 (MQ=255) gTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGA‑A‑AA‑AA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCgg > 1:3513393/1‑140 (MQ=255) tATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGAAA‑AA‑AA‑A‑ACATTGTCTGGCTTTATGAGAATTTTTCCGTGGAGTGGCAGTCCCCCAAAACCCAGCCCAGCAACTTGAGCgcc > 1:2377713/1‑138 (MQ=255) tATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGA‑A‑AA‑AA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCg < 2:5432335/140‑1 (MQ=255) tATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGA‑A‑AA‑AA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCg > 1:5438285/1‑140 (MQ=255) cTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGA‑A‑AA‑AA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAacac > 2:6225725/1‑140 (MQ=255) ggAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGA‑A‑AA‑AA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACaa < 1:392767/140‑1 (MQ=255) aaGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGA‑A‑AA‑AA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAAc > 2:3252310/1‑140 (MQ=255) aGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGA‑A‑AA‑AA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAAcc > 1:4087362/1‑140 (MQ=255) tctcATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGA‑A‑AA‑AA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCt > 2:7958204/1‑140 (MQ=255) tctcATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGA‑A‑AA‑AA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCt < 2:5734021/140‑1 (MQ=255) aTCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGA‑A‑AA‑AA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAAt > 1:2782176/1‑140 (MQ=255) aTCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGA‑A‑AA‑AA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAAt > 2:3676860/1‑140 (MQ=255) aTCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGA‑A‑AA‑AA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAAt > 2:10318935/1‑140 (MQ=255) tCCAGACATTGGGTGATGAATTGCTACAACAAGCTGAGAAGA‑A‑AA‑AA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATc < 1:9540628/140‑1 (MQ=255) tCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGA‑A‑AA‑AA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATc < 1:3160531/140‑1 (MQ=255) tCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGA‑A‑AA‑AA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATc < 1:25707/140‑1 (MQ=255) tCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGA‑A‑AA‑AA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATc < 1:6494797/140‑1 (MQ=255) accAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGA‑A‑AA‑AA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATc < 2:7574041/139‑1 (MQ=255) ccAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGA‑A‑AA‑AA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATcc > 1:866655/1‑140 (MQ=255) aCATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGA‑A‑AA‑AA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATcccggc > 1:2978753/1‑140 (MQ=255) aCATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGA‑A‑AA‑AA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATcccggc > 2:3410198/1‑140 (MQ=255) aCATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGA‑A‑AA‑AA‑A‑ACATTGTCTGGCGTTAGGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATcccggc > 2:7114526/1‑140 (MQ=255) cATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGA‑A‑AA‑AA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATcccggcc < 2:1379385/140‑1 (MQ=255) cATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGA‑A‑AA‑AA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATcccggcc < 2:9710431/140‑1 (MQ=255) tGGGTGATGAATTGCTACAAAAAGCTGAGAAGA‑A‑AA‑AA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCCTAAACTTGATCGGCGAACACAAACCCTCAATcccggcccgg > 2:259968/1‑140 (MQ=255) tGGGTGATGAATTGCTACAAAAAGCTGAGAAGA‑A‑AA‑AA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATcccggcccgg > 1:6369106/1‑140 (MQ=255) tGGGTGATGAATTGCTACAAAAAGCTGAGAAGA‑A‑AA‑AA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATcccggcccgg > 1:4964436/1‑140 (MQ=255) tGGGTGATGAATTGCTACAAAAAGATGAGAAGA‑A‑AA‑AA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACTCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATcccggcccgg > 1:1558933/1‑140 (MQ=255) gggTGATGAATTGCTACAAAAAGCTGAGAAGA‑A‑AA‑AA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGa > 1:7601509/1‑140 (MQ=255) gggTGATGAATTGCTACAAAAAGCTGAGAAGA‑A‑AA‑AA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGa > 1:1235963/1‑140 (MQ=255) ggTGATGAATTGCTACAAAAAGCTGAGAAGA‑A‑AA‑AA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGAc > 1:5107472/1‑140 (MQ=255) ggTGATGAATTGCTACAAAAAGCTGAGAAGA‑A‑AA‑AA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGAc > 2:1069645/1‑140 (MQ=255) ggTGATGAATTGCTACAAAAAGCTGAGAAGA‑A‑AA‑AA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGAc > 1:8821273/1‑140 (MQ=255) gatgaATTGCTACAAAAAGCTGAGAAGA‑A‑AA‑AA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAAt > 1:9270469/1‑140 (MQ=255) tgaATTGCTACAAAAAGCTGAGAAGA‑A‑AA‑AA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTAGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACCATgg > 1:5647529/1‑140 (MQ=255) gaATTGCTACAAAAATCTGAGAAGA‑A‑AA‑AA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATggc < 1:4534477/140‑1 (MQ=255) aaTTGCTACAAAAAGCTGAGAAGA‑A‑AA‑AA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATggcg < 1:3677080/140‑1 (MQ=255) tGCTACAAAAAGCTGAGAAGA‑A‑AA‑AA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCACTCCCGGCCCGGACAATGgcggcg < 2:2150946/140‑1 (MQ=255) tGCTACAAAAAGCTGAGAAGA‑A‑AA‑AA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGgcggcg > 1:2168094/1‑140 (MQ=255) tGCTACAAAAAGCTGAGAAGA‑A‑AA‑AA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGgcggcg < 2:8662215/140‑1 (MQ=255) tGCTACAAAAAGCTGAGAAGA‑A‑AA‑AA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGgcggcg > 1:10824497/1‑140 (MQ=255) tGCTACAAAAAGCTGAGAAGA‑A‑AA‑AA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGgcggcg < 1:7189443/140‑1 (MQ=255) tGCTACAAAAAGCTGAGAAGA‑A‑AA‑AA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGgcggcg < 2:6272775/140‑1 (MQ=255) tGCTACAAAAAGCTGAGAAGA‑A‑AA‑AA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGgcggcg < 2:4184402/140‑1 (MQ=255) tGCTACAAAAAGCTGAGAAGA‑A‑AA‑AA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGgcggcg < 1:6248016/140‑1 (MQ=255) tGCTACAAAAAGCTGAGAAGA‑A‑AA‑AA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGgcggcg < 1:894916/140‑1 (MQ=255) tGCTACAAAAAGCTGAGAAGA‑A‑AA‑AA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGgcggcg < 1:8418673/140‑1 (MQ=255) tGCTACAAAAAGCTGAGAAGA‑A‑AA‑AA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGgcggcg > 1:8150191/1‑140 (MQ=255) tGCTACAAAAAGCTGAGAAGA‑A‑AA‑AA‑A‑ACATGGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGgcggcg < 1:6059125/140‑1 (MQ=255) tGCTACAAAAAGCTGAGAAG‑‑ACAA‑AA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGgcggcg < 2:9480369/140‑1 (MQ=255) aCAAAAAGCTGAGAAGA‑A‑AA‑AA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGGCGGCGCTAg > 1:6678761/1‑140 (MQ=255) aaaaGCTGAGAAGA‑A‑AA‑AA‑A‑ACATTGTCTGGCGTTATGATAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGCTCGGCGAACACACACCCTCAATCCCGGCCCGGACAATGGCGGCGCTAGCCt > 2:8282667/1‑140 (MQ=255) aaaaGCTGAGAAG‑‑A‑AATAA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCAGCACGCAGGCCATCACCTTGCTCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGGCGGCGCTGGCCt > 2:5487764/1‑140 (MQ=255) aaGCGGCGAAGA‑A‑AA‑AA‑A‑ACCTGGTATGGCGTGATGCTAAGTTTTCAATGGAGTGGCAGTCCGCCATCAAGCAGGGCATCAAGTGGATCGGCGAACACAAACCCGCCAGCCCGGCCCGGACAATGGCGGCGCTAGCCAGt > 2:2773550/1‑140 (MQ=255) cTGAGAAGA‑A‑AA‑AA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGGCGGCGCTAGCCTGTATc > 2:462135/1‑140 (MQ=255) cTGAGAAGA‑A‑AA‑AA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGGCGGCGCTAGCCTGTATc > 1:10094067/1‑140 (MQ=255) | ATAACGCCCAACTGGAACTGAAATATAAAAAAGGCAAAACGCCGCTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAG‑‑A‑AA‑AA‑A‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGGCGGCGCTAGCCTGTATCGCG > NZ_CP025268/2204344‑2204617 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |