BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NZ_CP025268	2,292,596	(C)_6→7	pseudogene (361/2531 nt)	yejO ←	autotransporter YejO

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NZ_CP025268	2,292,590	1	.	C	96.4%	1815.1 / 54.8	553	pseudogene (367/2531 nt)	yejO	autotransporter YejO
Reads supporting (aligned to +/- strand): ref base . (9/11); new base C (214/314); total (226/327)
Fisher's exact test for biased strand distribution p-value = 8.17e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 591 total aligned reads displayed.

ACCGAGACGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGA‑C‑GG‑CCCC‑CCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCACCCATTTGAACAATTTGATAACCG  >  NZ_CP025268/2292451‑2292723

aCCGAGACGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGA‑C‑gg                                                                                                                                         >  2:2073084/1‑140 (MQ=255)

aCCGAGACGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGA‑C‑gg                                                                                                                                         >  1:2701222/1‑140 (MQ=255)

aCCGAGACGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGA‑C‑gg                                                                                                                                         >  1:9318869/1‑140 (MQ=255)

  cGAGACGGTTTGTTCCGAAAACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGA‑C‑GG‑cc                                                                                                                                      >  1:2037650/1‑140 (MQ=255)

      aCGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGA‑C‑GG‑cccc‑cc                                                                                                                                 >  2:4061884/1‑140 (MQ=255)

        ggTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGA‑C‑GG‑cccc‑ccca                                                                                                                               <  1:1589919/140‑3 (MQ=255)

        ggTTTGTTCCGAAAACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGGAGTCCTCCCTGTACGATAGCGACAAAGA‑C‑GG‑cccc‑ccca                                                                                                                               >  1:5866238/1‑138 (MQ=255)

          tttGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGA‑C‑GG‑cccc‑cccatc                                                                                                                             >  2:1051554/1‑136 (MQ=255)

              ttCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGA‑C‑GGCCCCC‑CCATCtttt                                                                                                                          >  1:432440/1‑140 (MQ=255)

               tCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGA‑C‑GGCCCCC‑CCATCttttt                                                                                                                         <  2:2515594/140‑1 (MQ=255)

                ccGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGA‑C‑GGCCCCC‑CCATCTTTTTc                                                                                                                        <  2:9017682/140‑1 (MQ=255)

                   aaTACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGA‑C‑GGCCCCC‑CCATCTTTTTCAAc                                                                                                                     >  1:307602/1‑140 (MQ=255)

                        cTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGA‑C‑GGCCCCC‑CCATCTTTTTCAACGATTa                                                                                                                >  2:3170601/1‑140 (MQ=255)

                          ccATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGA‑C‑GGCCCCC‑CCATCTTTTTCAACGATTAAg                                                                                                              >  1:5798525/1‑140 (MQ=255)

                            aTGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGA‑C‑GGCCCCC‑CCATCTTTTTCAACGATTAAgcg                                                                                                            >  1:10783723/1‑140 (MQ=255)

                             tGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGA‑C‑GGCCCCC‑CCATCTTTTTCAACGATTAAgcgc                                                                                                           <  2:8743322/140‑1 (MQ=255)

                             tGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGA‑C‑GGCCCCC‑CCATCTTTTTCAACGATTAAgcgc                                                                                                           <  1:9648313/140‑1 (MQ=255)

                             tGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGA‑C‑GGCCCCC‑CCATCTTTTTCAACGAGTAAgcgc                                                                                                           >  2:8125833/1‑140 (MQ=255)

                             tGGCCCGCGTGGTTGTTTTAATAGCACCGCCAGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGA‑C‑GGCCCCC‑CCATCTTTTTCAACGATTAAgcgc                                                                                                           <  2:683112/140‑1 (MQ=255)

                              ggCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGA‑C‑GGCCCCC‑CCATCTTTTTCAACGATTAAGcgcc                                                                                                          <  1:8099500/140‑1 (MQ=255)

                              ggCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGA‑C‑GGCCCCC‑CCATCTTTTTCAACGATTAAGcgcc                                                                                                          <  1:9874065/140‑1 (MQ=255)

                               gCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGA‑C‑GGCCCCC‑CCATCTTTTTCAACGATTAAGcgccc                                                                                                         <  2:2904814/140‑1 (MQ=255)

                                  cgcgTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGA‑C‑GGCCCCC‑CCATCTTTTTCAACGATTAAGcgcccgcc                                                                                                      >  1:8712471/1‑140 (MQ=255)

                                    cgTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGA‑C‑GGCCCCC‑CCATCTTTTTCAACGATTAAGCGCCCGCCtt                                                                                                    >  1:4056364/1‑140 (MQ=255)

                                       ggTTGTTTTACTAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAAGCCCCCCTCTTTAACCTCCAGTAGTCCTCCCGTTTCGATAGCGACAAAGA‑C‑GGCCCCC‑CCATCTTTTTCAACGATTAAGCGCCCGCCTTTaa                                                                                                 <  2:6111019/140‑1 (MQ=255)

                                         ttgttTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGA‑C‑GGCCCCC‑CCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATc                                                                                               >  1:4200914/1‑140 (MQ=255)

                                          tgttTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGA‑C‑GGCCCCC‑CCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCg                                                                                              <  1:4874643/140‑1 (MQ=255)

                                          tgttTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGA‑C‑GGCCCCC‑CCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCg                                                                                              <  2:8254514/140‑1 (MQ=255)

                                          tgttTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGA‑C‑GGCCCCC‑CCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCg                                                                                              <  1:7152787/140‑1 (MQ=255)

                                            ttttAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGA‑C‑GGCCCCC‑CCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTg                                                                                            <  1:10002650/140‑1 (MQ=255)

                                              ttAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGA‑C‑GGCCCCC‑CCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGt                                                                                          <  1:6359925/140‑1 (MQ=255)

                                                      aCCGCCTGCTTTCTGATCTACCGCAAATACAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGA‑C‑GGCCCCC‑CCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCg                                                                                  >  1:6489635/1‑140 (MQ=255)

                                                        cGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGA‑C‑GGCCCCC‑CCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCt                                                                                <  2:1803436/140‑1 (MQ=255)

                                                        cGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGA‑C‑GGCCCCC‑CCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCt                                                                                >  2:3434726/1‑140 (MQ=255)

                                                         gCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGCCAAAGA‑C‑GGCCCCC‑CCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTg                                                                               <  1:6105212/140‑1 (MQ=255)

                                                         gCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGA‑C‑GGCCCCC‑CCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTg                                                                               <  1:116665/140‑1 (MQ=255)

                                                         gCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGA‑C‑GGCCCCC‑CCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTg                                                                               <  1:1041627/140‑1 (MQ=255)

                                                          ccTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGA‑C‑GGCCCCC‑CCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTgc                                                                              >  2:2102792/1‑140 (MQ=255)

                                                          ccTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGA‑C‑GGCCCCC‑CCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTgc                                                                              >  1:9511071/1‑140 (MQ=255)

                                                          ccTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGA‑C‑GGCCCCC‑CCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTgc                                                                              >  2:6024381/1‑140 (MQ=255)

                                                          ccTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGA‑C‑GGCCCCC‑CCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTgc                                                                              >  2:7736605/1‑140 (MQ=255)

                                                          ccTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGA‑C‑GGCCCCC‑CCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTgc                                                                              >  1:2787459/1‑140 (MQ=255)

                                                                 tCTGATCTACCGCAACTGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGA‑C‑GGCCCCC‑CCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATaa                                                                       <  2:439404/140‑1 (MQ=255)

                                                                 tCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGA‑C‑GGTCCCC‑CCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATaa                                                                       <  2:9763135/140‑1 (MQ=255)

                                                                 tCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGA‑C‑GGTCCCC‑CCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATaa                                                                       <  2:1939455/140‑1 (MQ=255)

                                                                 tCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGA‑C‑GGCCCCC‑CCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATaa                                                                       <  2:3715190/140‑1 (MQ=255)

                                                                   agATCTACCGCAAATGCAAATCCACCCTCAGTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGA‑C‑GGCCCCC‑CCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAAc                                                                     <  2:10343582/139‑1 (MQ=255)

                                                                        tACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGA‑C‑GGCCCCC‑CCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTa                                                                >  1:4618329/1‑140 (MQ=255)

                                                                         aCCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGA‑C‑GGCCCCC‑CCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAg                                                               <  1:1821487/140‑1 (MQ=255)

                                                                         aCCGCAAATGCAAATCCCCCCTCTTGAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGA‑C‑GGCCCCC‑CCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAg                                                               <  1:5959404/140‑1 (MQ=255)

                                                                         aCCGCAAATGAAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGA‑C‑GGCCCCC‑CCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAg                                                               <  2:7227739/140‑1 (MQ=255)

                                                                          ccGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGA‑C‑GGCCCCC‑CCATCTTTTTCAAAGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGc                                                              >  2:2334978/1‑140 (MQ=255)

                                                                           cGCACATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGA‑C‑GGCCCCC‑CCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGca                                                             <  2:570146/140‑1 (MQ=255)

                                                                           cGCAAATGCAAATCCCCCCTCTTTCACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGA‑C‑GGCCCCC‑CCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCCTAAACCTGTAGca                                                             <  2:7123529/140‑1 (MQ=255)

                                                                           cGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGA‑C‑GGCCCCC‑CCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGca                                                             <  1:1390941/140‑1 (MQ=255)

                                                                           cGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGA‑C‑GGCCCCC‑CCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGca                                                             <  1:2558219/140‑1 (MQ=255)

                                                                           cGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGA‑C‑GGCCCCC‑CCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGca                                                             >  2:10728619/1‑140 (MQ=255)

                                                                           cGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGA‑C‑GGCCCCC‑CCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGca                                                             <  2:1435009/140‑1 (MQ=255)

                                                                           cGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGA‑C‑GGCCCCC‑CCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGACATAAACCTGTAGca                                                             <  1:8231453/140‑1 (MQ=255)

                                                                           cGCAAATACAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGAGAGCGACAAAGA‑C‑GGCCCCC‑CCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGca                                                             <  2:2677688/140‑1 (MQ=255)

                                                                             caaatgcaaatCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGA‑C‑GGCCCCC‑CCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGcaca                                                           <  1:2319674/140‑1 (MQ=255)

                                                                             caaatgcaaatCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGA‑C‑GG‑CCCCACCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGcaca                                                           <  1:6951948/140‑1 (MQ=255)

                                                                               aatgcaaatCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGA‑C‑GGCCCCC‑CCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACAcc                                                         >  2:1185713/1‑140 (MQ=255)

                                                                               aatgcaaatCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGA‑C‑GGCCCCC‑CCATCATTTTCAACGATTAAGCGCCCGCCATTAATCGTGGTAACATTCGCTGCGCCAAAAACCAGTAGCACAcc                                                         >  2:7965567/1‑140 (MQ=255)

                                                                                atgcaaatCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGA‑C‑GGCCCCC‑CCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCa                                                        <  2:8636667/140‑1 (MQ=255)

                                                                                    aaatCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGA‑C‑GGCCCCC‑CCATCTTTTACAACGATTAAGCGCCCGCCTTTCAGCGTGGTATCATTCGCTGCGCCATAAACATGTAGAACACCaaact                                                    >  2:3629045/1‑136 (MQ=255)

                                                                                     aatCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGA‑C‑GGCCCCC‑CCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCattatt                                                   <  2:9866803/140‑1 (MQ=255)

                                                                                         cccccTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGA‑C‑GGCCCCC‑CCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGGAGCACACCATTATTGAGc                                               <  2:3303775/140‑1 (MQ=255)

                                                                                          ccccTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGA‑C‑GGCCCCC‑CCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCg                                              <  1:8438887/140‑1 (MQ=255)

                                                                                          ccccTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGA‑C‑GGCCCCC‑CCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCg                                              <  1:6617095/140‑1 (MQ=255)

                                                                                          ccccTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGA‑C‑GGCCCCC‑CCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCg                                              >  2:5525312/1‑140 (MQ=255)

                                                                                            ccTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGA‑C‑GGCCCCC‑CCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTa                                            <  1:5082421/140‑1 (MQ=255)

                                                                                              tctTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGA‑C‑GGCCCCC‑CCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGt                                          <  1:9438416/140‑1 (MQ=255)

                                                                                              tctTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGA‑C‑GGCCCCC‑CCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGt                                          <  2:4883231/140‑1 (MQ=255)

                                                                                                 atAACCTCCACTACTCCTCCCATTTCTATAGCGACAAAGA‑C‑GGCCCCC‑CCATCATTTTCAACGATTAAGAGACCGCCATTAATCGAGGTATCATTCGCTGCGCCATAAACCTTTAGCACACCATTATTGAGCTTAGTCTg                                       <  2:6295314/139‑1 (MQ=255)

                                                                                                  tAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGA‑C‑GGCCCCC‑CCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTgg                                      <  2:4741719/140‑1 (MQ=255)

                                                                                                        ccAGTAGTCCTCCCTTTTCGATAGCGACAAAGA‑C‑GGCCCCC‑CCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATGATTGAGCGTCGTCTGGTTTGcc                                >  2:7053692/1‑140 (MQ=255)

                                                                                                         cAGTAGTCCTCCCTTTTCGATAGCGACAAAGA‑C‑GGCCCCC‑CCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCcg                               >  1:3887490/1‑140 (MQ=255)

                                                                                                           gtagtCCTCCCTTTTCGATAGCGACAAAGA‑C‑GGCCCCC‑CCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCcgcg                             <  1:3277554/140‑1 (MQ=255)

                                                                                                           gtagtCCTCCCTTTTCGATAGCGACAAAGA‑C‑GGCCCCC‑CCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCcgcg                             <  1:5400598/140‑1 (MQ=255)

                                                                                                               tcctccCTTTTCGATAGCGACAATGA‑CTGA‑CACC‑CCATCTTTTTCAACGATTAAGAGCGCGCCTTTAATCTTGGTATAATTCTCTGAGCAATAAACCTGTAGCACACCAAGTTTTAGCGTTGACTGGTTTGCCGCGcccc                         >  2:6556615/1‑138 (MQ=255)

                                                                                                                 ctccCTTTTCGATAGCGACAAAGA‑C‑GGCCCCC‑CCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCAccc                       >  2:10103782/1‑140 (MQ=255)

                                                                                                                 ctccCTTTTCGATAGCGACAAAGA‑C‑GGCCCCC‑CCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCAccc                       >  1:2136019/1‑140 (MQ=255)

                                                                                                                    ccTTTTCGATAGCGACAAAGA‑C‑GGCCCCC‑CCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCACCCagt                    >  1:7512151/1‑138 (MQ=255)

                                                                                                                      ttttCGATAGCGACAAAGA‑C‑GGCCCCC‑CCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCACCCATTTg                  >  2:5291886/1‑140 (MQ=255)

                                                                                                                      ttttCGATAGCGACAAAGA‑C‑GGCCCCC‑CCATCTTATTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCACCCATTTg                  >  1:10272172/1‑140 (MQ=255)

                                                                                                                         tCGATAGCGACAAAGA‑C‑GGCCCCC‑CCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCACCCATTTGAAc               >  2:4567309/1‑140 (MQ=255)

                                                                                                                         ccGAGAGCGACAACGACC‑GC‑CCCC‑CCCCCATTTACAACGCGCACGCGCCCGCCTTTCATCGGGCCATCAGTCGCTGCGCCATAAACCACTCGCCCACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCACCCATGTGAAc               <  2:10884369/139‑1 (MQ=255)

                                                                                                                                 gACAAAGA‑C‑GGCCCCC‑CCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCACCCATTTGAACAATTTGAt       <  2:8519985/140‑1 (MQ=255)

                                                                                                                                      aGA‑C‑GGCCCCC‑CCATCTTTTTCAACGATTAAGGGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCACCCATTTGAACAATTTGATAACCg  <  2:4956811/140‑1 (MQ=255)

                                                                                                                                      aGA‑C‑GGCCCCC‑CCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAACCCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCACCCATTTGAACAATTTGATAACCg  <  2:9213475/140‑1 (MQ=255)

                                                                                                                                      aGA‑C‑GGCCCCC‑CCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCACCCTTTTGAACAATTTGATAACCg  <  2:9507015/140‑1 (MQ=255)

                                                                                                                                      aGA‑C‑GGCCCCC‑CCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCACCCATTTGAACAATTTGATAACCg  <  1:5688533/140‑1 (MQ=255)

                                                                                                                                      aGA‑C‑GGCCCCC‑CCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCACCCATTTGAACAATTTGATAACCg  <  1:7826765/140‑1 (MQ=255)

                                                                                                                                      aGA‑C‑GGCCCCC‑CCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCACCCATTTGAACAATTTGATAACCg  <  1:3765586/140‑1 (MQ=255)

                                                                                                                                      aGA‑C‑GGCCCCC‑CCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCACCCATTTGAACAATTTGATAACCg  <  1:3443468/140‑1 (MQ=255)

                                                                                                                                      aGA‑C‑GGCCCCC‑CCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCACCCATTTGAACAATTTGATAACCg  <  1:2991691/140‑1 (MQ=255)

                                                                                                                                      aGA‑C‑GGCCCCC‑CCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCACCCATTTGAACAATTTGATAACCg  <  1:8983171/140‑1 (MQ=255)

                                                                                                                                      aGA‑C‑GGCCCCC‑CCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCACCCATTTGAACAATTTGATAACCg  <  2:3946697/140‑1 (MQ=255)

                                                                                                                                      aGA‑C‑GGCCCCC‑CCATCATTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCACCCATTTGAACAATTTGATAACCg  <  1:7241712/140‑1 (MQ=255)

ACCGAGACGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGA‑C‑GG‑CCCC‑CCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCACCCATTTGAACAATTTGATAACCG  >  NZ_CP025268/2292451‑2292723

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`