| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP025268 | 3,239,247 | (T)6→7 | intergenic (+264/‑18) | ygjR → / → alx | Gfo/Idh/MocA family oxidoreductase/TerC family membrane protein Alx |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP025268 | 3,239,241 | 1 | . | T | 95.2% | 1707.6 / 69.7 | 516 | intergenic (+258/‑24) | ygjR/alx | Gfo/Idh/MocA family oxidoreductase/TerC family membrane protein Alx |
| Reads supporting (aligned to +/- strand): ref base . (20/4); new base T (199/281); total (221/295) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.56e-05 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.87e-01 | |||||||||||
Only 100 of 586 total aligned reads displayed.
TGTGTGAAAAAACACATCCGGTCACCGGGCAACCCGAAAGGAATACGCAGACGTATTCCTTTTTTGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCTGACGTCTTCCGACGTTGGCCG‑TTT‑T‑TT‑ATGTGTAAGGAACTTCTATGAATACTGTCGGCACGCCGTTGCTATGGGGCGGATTCGCTGTTGTTGTCGCCATTATGCTGGCTATCGACCTGTTGTTGCAGGGGCGTCGTGGGGCACATGCCATGACC > NZ_CP025268/3239102‑3239375 | gtgtgAAAAAACACATCCGGTCACCGGGCAACCCGAAAGGAATACGCAGACGTATTCCTTTTTTGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCTGTCGTCTTCCGACGGTGGCCG‑t > 2:8048162/1‑140 (MQ=255) tgtgAAAAAACACATCCGGTCACCGGGCAACCCGAAAGGAATACGCAGACGTATTCCTTTTTTGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCTGACGTCTTCCGACGTTGGCCG‑tt > 2:13866/1‑140 (MQ=255) tgtgAAAAAACACATCCGGTCACCGGGCAACCCGAAAGGAATACGCAGACGTATTCCTTTTTTGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCTGACGTCTTCCGACGTTGGCCG‑tt > 2:4403474/1‑140 (MQ=255) tgtgAAAAAACACATCCGGTCACCGGGCAACCCGAAAGGAATACGCAGACGTATTCCTTTTTTGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCTGACGTCTTCCGACGTTGGCCG‑tt > 2:7618274/1‑140 (MQ=255) gtgAAAAAACACATCCGGTCACCGGGCAACCCGAAAGGAATACGCAGACGTATTCCTTTTTTGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCTGACGTCTTCCGACGTTGGCCG‑ttt > 1:7572340/1‑140 (MQ=255) aaaCACATCCGGTCACCGGGCAACCCGAAAGGAATACGCAGACGTATTCCTTTTTTGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCTGACGTCTTCCGACGTTGGCCG‑ttt‑t‑tttat < 1:5470845/140‑4 (MQ=255) cacaTCCGGTCACCGGGCAACCCGAAAGGAATACGCAGACGTATTCCTTTTTTGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCTGACGTCTTCCGACGTTGGCCGTTTT‑T‑TT‑Atgtg > 1:238603/1‑140 (MQ=255) cacaTCCGGTCACCGGGCAACCCGAAAGGAATACGCAGACGTATTCCTTTTTTGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCTGACGTCTTCCGACGTTGGCCGTTTT‑T‑TT‑Atgtg > 2:2285985/1‑140 (MQ=255) cacaTCCGGTCACCGGGCAACCCGAAAGGAATACGCAGACGTATTCCTTTTTTGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCTGACGTCTTCCGACGTTGGCCGTTTT‑T‑TT‑Atgtg < 1:773106/140‑1 (MQ=255) caTCCGGTCACCGGGCAACCCGAAAGGAATACGCAGACGTATTCCTTTTTTGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCTGACGTCTTCCGACGTTGGCCGTTTT‑T‑TT‑ATGTGTa < 1:5692145/140‑1 (MQ=255) tCCGGTCACCGGGCAACCCGAAAGGAATACGCAGACGTATTCCTTTTTTGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCTGACGTCTTCCGACGTTGGCCGTTTT‑T‑TT‑ATGTGTAAg < 2:8524422/140‑1 (MQ=255) ccGGTCACCGGGCAACCCGAAAGGAATACGCAGACGTATTCCTTTTTTGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCTGACGTCTTCCGACGTTGGCCGTTTT‑T‑TT‑ATGTGTAAgg > 2:7535811/1‑140 (MQ=255) tCACCGGGCAACCCGATAGGAATACGCAGACGTATTCCTTTTTTGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCTGACGTCTTCCGACGTTGGCCGTTTT‑T‑TT‑ATGTGTAAGGAACt < 2:6321215/140‑1 (MQ=255) tCACCGGGCAACCCGAAAGGAATACGCAGACGTATTCCTTTTTTGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCTGACGTCTTCCGACGTTGGCCGTTTT‑T‑TT‑ATGTGTAAGGAACt < 1:10607773/140‑1 (MQ=255) tCACCGGGCAACCCGAAAGGAATACGCAGACGTATTCCTTTTTTGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCTGACGTCTTCCGACGTTGGCCGATTT‑T‑TT‑ATGTGTAAGGAACt < 2:4527756/140‑1 (MQ=255) gCAACCCGAAAGGAATACGCAGACGTATTCCTTTTTTGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCTGACGTCTTCCGACGTTGGCCGTTTT‑T‑TT‑ATGTGTAAGGAACTTCt < 2:2883055/136‑1 (MQ=255) cAACCCGAAAGGAATACGCAGACGTATTCCTTTTTTGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCTGACGTCTTCCGACGTTGGCCGTTTT‑T‑TT‑ATGTGTAAGGAACTTCTATGaa < 1:2778278/140‑1 (MQ=255) aaCCCGAAAGGAATACGCAGACGTATTCCTTTTTTGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCTGACGTCTTCCGACGTTGGCCGTTTT‑T‑TT‑ATGTGTAAGGAACTTCTATGAAt > 2:8353706/1‑140 (MQ=255) aCCCGAAAGGAATACGCAGACGTATTCCTTTTTTGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCTGACGTCTTCCGACGTTGGCCGTTTT‑T‑TT‑ATGTGTAAGGAACTTCTATGAATa > 1:538735/1‑140 (MQ=255) aaaGGAATACGCAGACGTATTCCTTTTTTGTTGGAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCTGACGTCTTCCGACGTTGGCCG‑TTTGT‑TT‑ATGTGTACGGAACTGCTATGAATACTGTc > 2:8900428/1‑140 (MQ=255) gactACGCAGACGTATTCCTTTTTTGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCTGACGTCTTCCGACGTTGGCCGTTTT‑T‑TT‑ATGTGTAAGGAACTTCTATGAATACTGTCGGCa < 2:652577/137‑1 (MQ=255) gAATACGCAGACGTATTCCTTTTTTGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCTGACGTCTTCCGACGTTGGCCGTTTT‑T‑TT‑ATGTGTAAGGAACTTCTATGAATACTGTCGGCa < 1:9531139/140‑1 (MQ=255) gAATACGCAGACGTATTCCTTTTTTGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCTGACGTCTTCCGACGTTGGCCGTTTT‑T‑TT‑ATGTGTAAGGAACTTCTATGAATACTGTCGGCa < 2:6910557/140‑1 (MQ=255) gAATACGCAGACGTATTCCTTTTTTGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCTGACGTCTTCCGACGTTGGCCGTTTT‑T‑TT‑ATGTGTAAGGAACTTCTATGAATACTGTCGGCa < 1:10231322/140‑1 (MQ=255) gAATACGCAGACGTATTCCTTTTTTGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCTGACGTCTTCCGACGTTGGCCGTTTT‑T‑TT‑ATGTGTAAGGAACTTCTATGAATACTGTCGGCa < 1:10873757/140‑1 (MQ=255) aTACGCAGACGTATTCCTTTTTTGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCTGACGTCTTCCGACGTTGGCCGTTTT‑T‑TT‑ATGTGTAAGGAACTTCTATGAATACTGTCGGCACg < 1:8907542/140‑1 (MQ=255) aTACGCAGACGTATTCCTTTTTTGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCTGACGTCTTCCGACGTTGGCCGTTTT‑T‑TT‑ATGTGTAAGGAACTTCTATGAATACTGTCGGCACg < 1:6297550/140‑1 (MQ=255) tACTCAGACGTATTCCTTTTTTGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCTGACGTCTTCCGACGTTGGCCGTTTT‑T‑TT‑ATGTGTAAGGAACTTCTATGAATACTGTCGGCACGc > 1:7141065/1‑140 (MQ=255) tACGCAGACGTATTCCTTTTTTGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCTGACGTCTTCCGACGTTGGCCGTTTT‑T‑TT‑ATGTGTAAGGAACTTCTATGAATACTGTCGGCACGc < 1:3551543/140‑1 (MQ=255) cGCAGACGTATTCCTTTTTTGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCTGACGTCTTCCGACGTTGGCCGTTTT‑T‑TT‑ATGTGTAAGGAACTTCTATGAATACTGTCGGCACGCCg < 1:4418955/140‑1 (MQ=255) cGCAGACGTATTCCTTTTTTGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCTGACGTCTTCCGACGTTGGCCGTTTT‑T‑TT‑ATGTGTAAGGAACTTCTATGAATACTGTCGGCACGCCg < 2:1971118/140‑1 (MQ=255) cGCAGACGTAGTCCTTTTTTGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCTGACGTCTTCCGACGTTGGCCGTTTT‑T‑TT‑ATGTGTAAGGAACTTCTATGAATACTGTCGGCACGCCg < 2:9368281/140‑1 (MQ=255) aCGTATTCCTTTTTTGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCTGACGTCTTCCGACGTTGGCCGTTTT‑T‑TT‑ATGTGTAAGGAACTTCTATGAATACTGTCGGCACGCCGTTGCt > 2:2746635/1‑140 (MQ=255) aCGTATTCCTTTTTTGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCTGACGTCTTCCGACGTTGGCCGTTTT‑T‑TT‑ATGTGTAAGGAACTTCTATGAATACTGTCGGCACGCCGTTGCt < 1:2555602/140‑1 (MQ=255) aCGTATTCCTTTTTTGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCTGACGTCTTCCGACGTTGGCCGTTTT‑T‑TT‑ATGTGTAAGGAACTTCTATGAATACTGTCGGCACGCCGTTGCt > 2:3043702/1‑140 (MQ=255) cGTATTCCTTTTTTGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCTGACGTCTTCCGACGTTGGCCGTTTT‑T‑TT‑ATGTGTAAGGAACTTCTATGAATACTGTCGGCACGCCGTTGCTa > 2:5210764/1‑140 (MQ=255) ttCCTGTTTTTTGGTAATAGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCATAGTATGACGACTTCCGACGTTGGCCGATTT‑T‑TT‑ATGTGTAAGGAACTTCTATGAATACTGTCGGCACGCCGTTGCTATggg > 2:7115830/1‑140 (MQ=255) cTTTTTTGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCTGACGTCTTCCGACGTTGGCCGTTTT‑T‑TT‑ATGTGTAAGGAACTTCTATGAATACTGTCGGCACGCCGTTGCTATGGGGCg > 2:3214148/1‑140 (MQ=255) tttttGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCTGACGTCTTCCGACGTTGGCCGTTTT‑T‑TT‑ATGTGTAAGGAACTTCTATGAATACTGTCGGCACGCCGTTGCTATGGGGCGGa < 2:2492450/140‑1 (MQ=255) tttttGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCTGACGTCTTCCGACGTTGGCCGTTTT‑T‑TT‑ATGTGTAAGGAACTTCTATGAATACTGTCGGCACGCCGTTGCTATGGGGCGGa > 1:858748/1‑140 (MQ=255) tttttGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCTGACGTCTTCCGACGTTGGCCGTTTT‑T‑TT‑ATGTGTAAGGAACTTCTATGAATACTGTCGGCACGCCGTTGCTATGGGGCGGa > 1:5056663/1‑140 (MQ=255) attgttgTAAGTGAGACCTTGCCTGAAGGCGAGGTCTATGCATAACTAGCAGCGGATGACGTCTTCCGACGTTGGCCGTTTT‑T‑TT‑ATGTGTAAGGAACTTCTATGAATACTGTCGGCTCGCCGTTGCTATGGGGCGGttt < 2:792975/139‑1 (MQ=255) gtAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCTGACGTCTTCCGACGTTGGCCGTTTT‑T‑TT‑ATGTGTAAGGAACTTCTATGAATACTGTCGGCACGCCGTTGCTATGGGGCGGATTCGCtgt > 1:1565332/1‑140 (MQ=255) gagaCCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCTGACGTCTTCCGACGTTGGCCGTTTT‑T‑TT‑ATGTGTAAGGAACTTCTATGAATACTGTCGGCACGCCGTTGCTATGGGGCGGATTCGCtgttgttgt < 2:5050968/140‑1 (MQ=255) gaCCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCTGACGTCTTCCGACGTTGGCCGTTTT‑T‑TT‑CTGTGTAAGGAACTTCTATGAATACTGTCGGCACGCCGTTGCTATGGGGCGGATTCGCTGTTGTTGTCg > 2:3444031/1‑140 (MQ=255) gaCCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCTGACGTCTTCCGACGTTGGCCGTTTT‑T‑TT‑ATGTGTAAGGAACTTCTATGAATACTGTCGGCACGCCGTTGCTATGGGGCGGATTCGCTGTTGTTGTCg > 2:7363042/1‑140 (MQ=255) gaCCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCTGACGTCTTCCGACGTTGGCCGTTTT‑T‑TT‑ATGTGTAAGGAACTTCTATGAATACTGTCGGCACGCCGTTGCTATGGGGCGGATTCGCTGTTGTTGTCg > 2:1561782/1‑140 (MQ=255) gaCCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCTGACGTCTTCCGACGTTGGCCGTTTT‑T‑TT‑ATGTGTAAGGAACTTCTATGAATACTGTCGGCACGCCGTTGCTATGGGGCGGATTCGCTGTTGTTGTCg < 2:9516284/140‑1 (MQ=255) aCCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCTGACGTCTTCCGACGTTGGCCGTTTT‑T‑TT‑ATGTGTAAGGAACTTCTATGAATACTGTCGGCACGCCGTTGCTATGGGGCGGATTCGCTGTTGTTGTCGc < 2:9036048/140‑1 (MQ=255) ccTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCTGACGTCTTCCGACGTTGGCCGTTTT‑T‑TT‑ATGTGTAAGGAACTTCTATGAATACTGTCGGCACGCCGTTGCTATGGGGCGGATTCGCTGTTGTTGTCGcc < 1:1186993/140‑1 (MQ=255) ccTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCTGACGTCTTCCGACGTTGGCCGTTTT‑T‑TT‑ATGTGTAAGGAACTTCTATGAATACTGTCGGCACGCCGTTGCTATGGGGCGGATTCGCTGTTGTTGTCGcc < 2:1168421/140‑1 (MQ=255) tGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCTGACGTCTTCCGACGTTGGCCG‑TTT‑TGTT‑ATGTGTAAGGAACTTCTATGAATACTGTCGGCACGCCGTTGCTCTGGGGCGGATTCGCTGTTGTTGTCGCCAtt > 1:2104875/1‑140 (MQ=255) tGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCTGACGTCTTCCGACGGTGGCCGTTTT‑T‑TT‑ATGTGTAAGGAACTTCTATGAATACTGTCGGCACGCCGTTGCTATGGGGCGGATTCGCTGTTGTTGTCGCCAtt > 2:4921955/1‑140 (MQ=255) cGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCTGACGTCTTCCGACGTTGGCCGATTT‑T‑TT‑ATGTGTAAGGAACTTCTATGAATACTGTCGGCACGCCGTTGCTATGGGGCGGATTCGCTGTTGTTGTCGCCATTATg < 1:6860470/140‑1 (MQ=255) gAAGGCGAGGTCTATGCATAAAAAGCAGCGGCTGACGTCTTCCGACGTTGGCCGTTTT‑T‑TT‑ATGTGTAAGGAACTTCTATGAATACTGTCGGCACGCCGTTGCTATGGGGCGGATTCGCTGTTGTTGTCGCCATTATGCt < 2:10297554/140‑1 (MQ=255) aaGGCGAGGTCTATGCATAAAAAGCAGCGGCTGACGTCTTCCGACGTTGGCCGTTTT‑T‑TT‑ATGTGTAAGGAACTTCTATGAATACTGTCGGCACGCCGTTGCTATGGGGCGGATTCGCTGTTGTTGTCGCCATTATGCTg > 1:1481448/1‑140 (MQ=255) cGAGGTCTATGCATAAAAAGCAGCGGCTGACGTCTTCCGACGTTGGCCGTTTT‑T‑TT‑ATGTGTAAGGAACTTCTATGAATACTGTCGGCACGCCGTTGCTATGGGGCGGATTCGCTGTTGTTGTCGCCATTATGCTGGCTa > 1:3309093/1‑140 (MQ=255) cGAGGTCTATGCATAAAAAGCAGCGGCTGACGTCTTCCGACGTTGGCCGTTTT‑T‑TT‑ATGTGTAAGGAACTTCTATGAATACTGTCGGCACGCCGTTGCTATGGGGCGGATTCGCTGTTGTTGTCGCCATTATGCTGGCTa < 1:4207803/140‑1 (MQ=255) aGGTCTATGCATAAAAAGCAGCGGCTGACGTCTTCCGACGTTGGCCGTTTT‑T‑TT‑ATGTGTAAGGAACTTCTATGAATACTGTCGGCACGCCGTTGCTATGGGGCGGATTCGCTGTTGTTGTCGCCATTATGCTGGCTATc > 2:10475237/1‑140 (MQ=255) gTCTATGCATAAAAAGCAGCGGCTGACGTCTTCCGACGTTGGCCGTTTT‑T‑TT‑ATGTGTAAGGAACTTCTATGAATACTGTCGGCACGCCGTTGCTATGGGGCGGATTCGCTGTTGTTGTCGCCATTATGCTGGCTATCGa < 1:7024472/140‑1 (MQ=255) tCTTTGCATAAAAAGCAGCGGCTGACGTCTTCCGACGTTGGCCGTTTT‑T‑TT‑ATGTGTAAGGAACTTCTATGAATACTGTCGGCACGCCGTTGCTATGGGGCGGATTCGCTGTTGTTGTCGCCATTATGCTGGCTATCGAc < 2:10690271/140‑1 (MQ=255) tCTATGCCTAACAAGCAGCGGCTGACGTCTTCCGACGTTGGCCGATTT‑T‑TT‑ATGTGTAAGGAACTTCTATGAATACTGTCGGCACGCCGTTGCTATGGGGCGGATTCGCTGTTGTTGTCGCCATTATGCTGGCTATCGAc < 1:8413203/140‑1 (MQ=255) tCTATGCATAAAAAGCAGCGGCTGACGTCTTCCGACGTTGGCCGTTTT‑T‑TT‑ATGTGTAAGGAACTTCTATGAATACTGTCGGCACGCCGTTGCTATGGGGCGGATTCGCTGTTGTTGTCGCCATTATGCTGGCTATCGAc < 2:9783040/140‑1 (MQ=255) acaaTGCATAAAAAGCCGCGGCTGACGTCGTCCGACGTTGGCCT‑TTT‑TATT‑ATGTGTAAGGAACTTCTATGAATACAGACGGCACGCCGTTGCTCAGGGGCGGATTCGCAGTTGTTGTCGCCATTATGCTGGCTATCGAc < 2:4094342/137‑1 (MQ=255) cTATGCATAAAAAGCAGCGGCTGACGTCTTCCGACGTTGGCCGTTTT‑T‑TT‑ATGTGTAAGGAACTTCTATGAATACTGTCGGCACGCCGTTGCTATGGGGCGGATTCGCTGTTGTTGTCGCCATTATGCTGGCTATCGAcc < 2:2121836/140‑1 (MQ=255) tGCATAAACAGCAGCGGCTGACGTCTTCCGACGTTGGCCGTTTT‑T‑TT‑ATGTGTAAGGCACTTCTATGAATACTGTCGGCACGCCGTTGCTATGGGGCGGATTCGCTGTTGTTGTCGCCATTATGCTGGCTATCGACCtgt < 1:8781647/140‑1 (MQ=255) tGCATAAAAAGCAGCGGCTGACGTCTTCCGACGTTGGCCGTTTT‑T‑TT‑ATGTGTAAGGAACTTCTATGAATACTGTCGGCACGCCGTTGCTATGGGGCGGATTCGCTGTTGTTGTCGCCATTATGCTGGCTATCGACCtgt > 2:4233210/1‑140 (MQ=255) tGCATAAAAAGCAGAGGCTGAAGTCTTCCGACGTTGGCGG‑TTTGT‑TT‑ATGTGTAAGGAAATTCTATGAATACTGTCGGCACGCCGTTGCTATGGGGCGGGTTGGGTGTTGTGGTCGGCCTTATGCTGGAGATCGActggt > 2:6068737/1‑136 (MQ=255) aaaaaGCAGCGGCTGACGTCTTCCGACGTTGGCCGTTTT‑T‑TT‑ATGTGTAAGGAACTTCTATGAATACTGTCGGCACGCCGTTGCTATGGGGCGGATTCGCTGTTGTTGTCGCTATTATGCTGGCTATCGACCTGttgttg > 2:3875411/1‑140 (MQ=255) aaaaaGCAGCGGCTGACGTCTTCCGACGTTGGCCGTTTT‑T‑TT‑ATGTGTAAGGAACTTCTATGAATACTGTCGGCACGCCGTTGCTATGGGGCGGATTCGCTGTTGTTGTCGCCATTATGCTGGCTATCGACCTGttgttg > 1:4046389/1‑140 (MQ=255) aaaaaGCAGCGGCTGACGTCTTCCGACGTTGGCCG‑TTT‑T‑TTGATGTGTTAGGAACTTCTATGAATACTGTCGGCACGCCGTTGCTGTGGGGCGGATTCGCTGTTGTTGTCGCCCTTATGCTGGCTATCGACGGGttgttg > 2:8717275/1‑140 (MQ=255) aaaaGCAGCGGCTGACGTCTTCCGACGTTGGCCGTTTT‑T‑TT‑ATGTGTAAGGAACTTCTATGAATACTGTCGGCACGCCGTTGCTATGGGGCGGATTCGCTGTTGTTGTCGCGATTATGCTGGCTATCGACCTGTTGTTGc > 1:10019238/1‑140 (MQ=255) aaaaGCAGCGGCTGACGTCTTCCGACGTTGGCCGTTTT‑T‑TT‑ATGTGTAAGGAACTTCTATGAATACTGTCGGCACGCCGTTGCTATGGGGCGGATTCGCTGTTGTTGTCGCCATTATGCTGGCTATCGACCTGTTGTTGc > 1:2998125/1‑140 (MQ=255) aaaaGCAGCGGCTGACGTCTTCCGACGTTGGCCGTTTT‑T‑TT‑ATGTGTAAGGAACTTCTATGAATACTGTCGGCACGCCGTTGCTATGGGGCGGATTCGCTGTTGTTGTCGCCATTATGCTGGCTATCGACCTGTTGTTGc > 1:3732167/1‑140 (MQ=255) aaGCAGCGGCTGACGTCTTCCGACGTTGGCCGTTTT‑T‑TT‑ATGTGTAAGGAACTTCTATGAATACTGTCGGCACGCCGTTGCTATGGGGCGGATTCGCTGTTGTTGTCGCCATTATGCTGGCTATCGACCTGTTGTTGCAg > 1:1864794/1‑140 (MQ=255) aaGCAGCGGCTGACGTCTTCCGACGTTGGCCGATTT‑T‑TT‑ATGTGTAAGGAACTTCTATGAATACTGTCGGCACGCCGTTGCTATGGGGCGGATTCGCTGTTGTTGTCGCCATTATGCTGGCTATCGACCTGTTGTTGCAg < 1:6026210/140‑1 (MQ=255) gcagcGGCTGACGTCTTCCGACGTTGGCCGTTTT‑T‑TT‑ATGTGTAAGGAACTTCTATGAATACTGTCGGCACGCCGTTGCTATGGGGCGGATTCGCTGTTGTTGTCGCCATTATGCTGGCTATCGACCTGTTGTTGCAggg < 1:9367901/140‑1 (MQ=255) cagcGGCTGACGTCTTCCGACGTTGGCCGTTTT‑T‑TT‑ATGTGTAAGGAACTTCTATGAATACTGTCGGCACGCCGTTGCTATGGGGCGGATTCGCTGTTGTTGTCGCCATTATGCTGGCTATCGACCTGTTGTTGCAgggg < 1:2854406/140‑1 (MQ=255) gcGGCTGACGTCTTCCGACGTTGGCCGTTTT‑T‑TT‑ATGTGTAAGGAACTTCTATGAATACTGTCGGCACGCCGTTGCTATGGGGCGGATTCGCTGTTGTTGTCGCCATTATGCTGGCTATCGACCTGTTGTTGCAGGGGcg > 2:1785975/1‑140 (MQ=255) gcGGCTGACGTCTTCCGAAGTTGGCCGTTTT‑T‑TT‑ATGTGTAAGGAACTTCTATGAATACTGTCGGCACGCCGTTGCTATGGGGCGGATTCGCTGTTGTTGTCGCCATTATGCTGGCTATCGACCTGTTGTTGCAGGGGcg < 1:9668384/140‑1 (MQ=255) cGGCTGACGTCTTCCGACGTTGGCCGTTTT‑T‑TT‑ATGTGTAAGGAACTTCTATGAATACTGTCGGCACGCCGTTGCTATGGGGCGGATTCGCTGTTGTTGTCGCCATTATGCTGGCTATCGACCTGTTGTTGCAGGGGcgt > 1:1653112/1‑140 (MQ=255) ggCTGACGTCTTCCGACGTTGGCCGATTT‑T‑TT‑ATGTGTAAGGAACTTCTATGAATACTGTCGGCACGCCGTTGCTATGGGGCGGATTCGCTGTTGTTGTCGCCATTATGCTGGCTATCGACCTGTTGTTGCAGGGGcgtc < 1:10454390/140‑1 (MQ=255) cggACGTCTGCCGACGTGGGCCGTTTT‑T‑TT‑ATGTGTAAGGACCTTCTATGAATACTGTCGGCACGCCGTTGCTATGGGGCGGATTCGCTGTTGTTGTCGCCATTATGCTGGCTATCGACCTGTTGTTGCAGGGGcgtcgt < 1:9836858/138‑1 (MQ=255) tGACGTCTTCCGACGTTGGCCGTTTT‑T‑TT‑ATGTGTAAGGAACTTCTATGAATACTGTCGGCACGCCGTTGCTATGGGGCGGATTCGCTGTTGTTGTCGCCATTATGCTGGCTATCGACCTTTTGTTGCAGGGGCGTCGTg < 1:8715633/140‑1 (MQ=255) tGACGTCTTCCGACGTTGGCCGTTTT‑T‑TT‑ATGTGTAAGGAACTTCTATGAATACTGTCGGCACGCCGTTGCTATGGGGCGGATTCGCTGTTGTTGTCGCCATTATGCTGGCTATCGACCTGTTGTTGCAGGGGCGTCGTg < 2:5878290/140‑1 (MQ=255) tGACGTCTTCCGACGTTGGCCGTTTT‑T‑TT‑ATGTGTAAGGAACTTCTATGAATACTGTCGGCACGCCGTTGCTATGGGGCGGATTCGCTGTTGTTGTCGCCATTATGCTGGCTATCGACCTGTTGTTGCAGGGGCGTCGTg < 1:1373451/140‑1 (MQ=255) gACGTCTTCCGACGTTGGCCGTTTT‑T‑TT‑ATGTGTAAGGAACTTCTATGAATACTGTCGGCACGCCGTTGCTATGGGGCGGATTCGCTGTTGTTGTCGCCATTATGCTGGCTATCGACCTGTTGTTGCAGGGGCGTCGTgg < 2:3732167/140‑1 (MQ=255) tCTTCCGACGTTGGCCGTTTT‑T‑TT‑ATGTGTAAGGAACTTCTATGAATACTGTCGGCACGCCGTTGCTATGGGGCGGATTCGCTGTTGTTGTCGCCATTATGCTGGCTATCGACCTGTTGTTGCAGGGGCGTCGTGGGGca < 1:9026881/140‑1 (MQ=255) tCTTCCGACGTTGGCCGTTTT‑T‑TT‑ATGTGTAAGGAACTTCTATGAATACTGTCGGCACGCCGTTGCTATGGGGCGGATTCGCTGTTGTTGTCGCCATTATGCTGGCTATCGACCTGTTGTTGCAGGGGCGTCGTGGGGca < 2:664514/140‑1 (MQ=255) tCTTCCGACGTTGGCCGTTTT‑T‑TT‑ATGTGTAAGGAACTTCTATGAATACTGTCGGCACGCCGTTGCTATGGGGCGGATTCGCTGTTGTTGTCGCCATTATGCTGGCTATCGACCTGTTGTTGCAGGGGCGTCGTGGGGca < 1:7897969/140‑1 (MQ=255) tCTTCCGACGTTGGCCGTTTT‑T‑TT‑ATGTGTAAGGAACTTCTATGAATACTGTCGGCACGCCGTTGCTATGGGGCGGATTCGCTGTTGTTGTCGCCATTATGCTGGCTATCGACCTGTTGTTGCAGGGGCGTCGTGGGGca < 1:6555199/140‑1 (MQ=255) tCTTCCGACGTTGGCCGTTTT‑T‑TT‑ATGTGTAAGGAACTTCTATGAATACTGTCGGCACGCCGTTGCTATGGGGCGGATTCGCTGTTGTTGTCGCCATTATGCTGGCTATCGACCTGTTGTTGCAGGGGCGTCGTGGGGca < 1:10646650/140‑1 (MQ=255) tCTTCCGACGTGGGCCGTTTT‑T‑TT‑ATGTGTAAGGAACTTCTATGAATACTGTCGGCACGCCGTTGCTATGGGGCGGATTCGCTGTTGTTGTCGCCATTATGCTGGCTATCGACCTGTTGTTGCAGGGGCGTCGTGGGGca < 1:4597195/140‑1 (MQ=255) cTTCCGACGTTGGCCGTTTT‑T‑TT‑ATGTGTAAGGAACTTCTATGAATACTGTCGGCACGCCGTTGCTATGGGGCGGATTCGCTGTTGTTGTCGCCATTATGCTGGCTATCGACCTGTTGTTGCAGGGGCGTCGTGGGGcac < 1:4315584/140‑1 (MQ=255) tCCGACGTTGGCCGTTTT‑T‑TT‑ATGTGTAAGGAACTTCTATGAATACTGTCGGCACGCCGTTGCTATGGGGCGGATTCGCTGTTGTTGTCGCCATTATGCTGGCTATCGACCTGTTGTTGCAGGGGCGTCGTGGGGCACAt > 1:468628/1‑140 (MQ=255) cGTTGGCCGTTTT‑T‑TT‑ATGTGTAAGGAACTTCTATGAATACTGTCGGCACGCCGTTGCTATGGGGCGGATTCGCTGTTGTTGTCGCCATTATGCTGGCTATCGACCTGTTGTTGCAGGGGCGTCGTGGGGCACATGccat < 1:9475498/140‑1 (MQ=255) cGTTGGCCGTTTT‑T‑TT‑ATGTGTAAGGAACTTCTATGAATACTGTCGGCACGCCGTTGCTATGGGGCGGATTCGCTGTTGTTGTCGCCATTATGCTGGCTATCGACCTGTTGTTGCAGGGGCGTCGTGGGGCACATGccat < 1:9175826/140‑1 (MQ=255) cGTTGGCCGTTTT‑T‑TT‑ATGTGTAAGGAACTTCTATGAATACTGTCGGCACGCCGTTGCTATGGGGCGGATTCGCTGTTGTTGTCGCCATTATGCTGGCTATCGACCTGTTGTTGCAGGGGCGTCGTGGGGCACATGccat < 2:1010930/140‑1 (MQ=255) ggCCGTTTT‑T‑TT‑ATGTGTAAGGAACTTCTATGAATACTGTCGGCACGCCGTTGCTATGGGGCGGATTCGCTGTTGTTGTCGCCATTATGCTGGCTATCGACCTGTTGTTGCAGGGGCGTCGTGGGGCACATGccatgacc > 1:7370208/1‑140 (MQ=255) ggCCGTTTT‑T‑TT‑ATGTGTAAGGAACTTCTATGAATACTGTCGGCACGCCGTTGCTATGGGGCGGATTCGCTGTTGTTGTCGCCATTATGCTGGCTATCGACCTGTTGTTGCAGGGGCGTCGTGGGGCACATGccatgacc < 2:5555976/140‑1 (MQ=255) | TGTGTGAAAAAACACATCCGGTCACCGGGCAACCCGAAAGGAATACGCAGACGTATTCCTTTTTTGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCTGACGTCTTCCGACGTTGGCCG‑TTT‑T‑TT‑ATGTGTAAGGAACTTCTATGAATACTGTCGGCACGCCGTTGCTATGGGGCGGATTCGCTGTTGTTGTCGCCATTATGCTGGCTATCGACCTGTTGTTGCAGGGGCGTCGTGGGGCACATGCCATGACC > NZ_CP025268/3239102‑3239375 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |