Predicted mutation
evidence seq id position mutation annotation gene description
RA NZ_CP025268 3,743,290 +C intergenic (‑66/‑116) yiaJ ← / → galK IclR family transcriptional regulator YiaJ/galactokinase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NZ_CP0252683,743,2891.C98.3% 998.9 / 8.1 294intergenic (‑65/‑117)yiaJ/galKIclR family transcriptional regulator YiaJ/galactokinase
Reads supporting (aligned to +/- strand):  ref base . (2/3);  new base C (149/140);  total (151/143)
Fisher's exact test for biased strand distribution p-value = 6.77e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 310 total aligned reads displayed.

CTGGCTTCCGGCTGGACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACAATTGATTTTTATGTCTTTTGAAATTCATCAATCCTGTTGACAATTAATCATCGGCATAGTATATCGGCATAGTATAATACGACAAGGTGAGGAACTAAACCCAGGAGGCAGATCATGAGTCTGAAAGAAAAA  >  NZ_CP025268/3743153‑3743423
                                                                                                                                         |                                                                                                                                       
ctGGCTTCCGGCTGGACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAAcca                                                                                                                                      >  2:8167820/1‑138 (MQ=255)
  ggCTTCCGGCTGGACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAAccaat                                                                                                                                    <  2:4433871/140‑5 (MQ=255)
  ggCTTCCGGCTGGACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAAccaat                                                                                                                                    >  2:10123411/1‑136 (MQ=255)
    cTTCCGGCTGGACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACCAATTg                                                                                                                                  <  2:3281833/140‑1 (MQ=255)
       ccGGCTGGACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACCAATTGAtt                                                                                                                               >  1:10668495/1‑140 (MQ=255)
       ccGGCTGGACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACCAATTGAtt                                                                                                                               >  1:9655702/1‑140 (MQ=255)
            tGGACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACCAATTGATTTTTAt                                                                                                                          <  1:10466844/140‑1 (MQ=255)
            atgACGCTCTTTTTCCTGCGCGATCTCGGTCTCTTTTTTTCCCATCACTGCTTTCCCCATTTTGTCGCGTCCGGTTGGGAGCGCAAAGTGTGCCGTAGTTGACGATCTCGTCAGTTAATTTTTAACAAATTGATTTTTAt                                                                                                                          <  2:6512787/138‑1 (MQ=255)
             ggACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACCAATTGATTTTTATg                                                                                                                         >  2:771352/1‑140 (MQ=255)
             ggACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACCAATTGATTTTTATg                                                                                                                         >  2:10496523/1‑140 (MQ=255)
             ggACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACCAATTGATTTTTATg                                                                                                                         >  2:6163937/1‑140 (MQ=255)
                      ttttCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACCAATTGATTTTTATGTCTTTTGaa                                                                                                                <  1:1964472/140‑1 (MQ=255)
                      ttttCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACCAATTGATTTTTATGTCTTTTGaa                                                                                                                <  1:2782899/140‑1 (MQ=255)
                      ttgtCCTGCGCCATCTCGGTCTCGTTGTTTCCCATCACTTCTTTCCCCATTTGGTCGCGTCCGGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGAGAATTTCTAACCAAGTGATTTTTATGTCATTTGaa                                                                                                                <  2:1229638/137‑1 (MQ=255)
                        ttCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACCAATTGATTTTTATGTCTTTTGAAAt                                                                                                              >  2:2295380/1‑140 (MQ=255)
                             gcgcCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACCAATTGATTTTTATGTCTTTTGAAATtcatc                                                                                                         >  1:10012511/1‑140 (MQ=255)
                             gcgcCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACCAATTGATTTTTATGTCTTTTGAAATtcatc                                                                                                         >  2:2791172/1‑140 (MQ=255)
                              cgcCATCTCGTTCTCTTATTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACCAATTGATTTTTATGTCTTTTGAAATtcatca                                                                                                        <  1:10351245/140‑1 (MQ=255)
                               gcCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCGGTAGTTCACGTTCTCGACAGATATTTTATAACCAATTGATTTTTATGTCTTTTGAAATTCATCaa                                                                                                       >  1:5418932/1‑140 (MQ=255)
                                   tctcGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCag                                                                                                   >  2:3368245‑M1/1‑138 (MQ=255)
                                    ctcGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCaga                                                                                                  <  1:9371442‑M1/140‑4 (MQ=255)
                                        ttCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgc                                                                                              >  2:984972‑M1/1‑133 (MQ=255)
                                         tctcTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgcc                                                                                             <  1:8167820‑M1/140‑9 (MQ=255)
                                         tctcTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgcc                                                                                             <  1:381362‑M1/140‑9 (MQ=255)
                                         tctcTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgcc                                                                                             <  1:9174130‑M1/140‑9 (MQ=255)
                                         tctcTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgcc                                                                                             <  2:4758052‑M1/140‑9 (MQ=255)
                                         tctcTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgcc                                                                                             <  2:558547‑M1/140‑9 (MQ=255)
                                         tctcTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgcc                                                                                             <  1:2588918‑M1/140‑9 (MQ=255)
                                         tctcTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgcc                                                                                             <  1:7354381‑M1/140‑9 (MQ=255)
                                         tctcTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgcc                                                                                             <  2:6281449‑M1/140‑9 (MQ=255)
                                         tctcTATTTTTCCCCTCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgcc                                                                                             <  1:9903995‑M1/140‑9 (MQ=255)
                                             tttttttCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACCATTTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgg                                                                                         >  2:6625667‑M1/1‑128 (MQ=255)
                                              ttttttCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgtt                                                                                        <  2:10668495‑M1/140‑14 (MQ=255)
                                                   tCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaa                                                                                   <  1:4520577‑M1/140‑19 (MQ=255)
                                                       aTCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgcc                                                                                             >  2:10161271‑M1/1‑118 (MQ=255)
                                                       aTCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgcc                                                                                             <  1:10161271‑M1/126‑9 (MQ=255)
                                                        tCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgat                                                                              <  1:569942‑M1/140‑24 (MQ=255)
                                                        tCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgat                                                                              <  1:371769‑M1/140‑24 (MQ=255)
                                                        tCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagcgat                                                                              <  1:8315887‑M1/140‑24 (MQ=255)
                                                            ttcttTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgat                                                                          <  1:7554735‑M1/140‑28 (MQ=255)
                                                            ttcttTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgat                                                                          <  2:3614867‑M1/140‑28 (MQ=255)
                                                            ttcttTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgat                                                                          <  1:8202443‑M1/140‑28 (MQ=255)
                                                             tcttTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgata                                                                         <  1:7993463‑M1/140‑29 (MQ=255)
                                                              cttTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatat                                                                        >  2:6914283‑M1/1‑111 (MQ=255)
                                                                ttCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatat                                                                      <  1:9445962‑M1/140‑32 (MQ=255)
                                                                        tttGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatattagaaatc                                                              >  1:3398692‑M1/1‑101 (MQ=255)
                                                                                 tCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgc                                                     >  1:286065‑M1/1‑92 (MQ=255)
                                                                                 tCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgc                                                     >  2:1449947‑M1/1‑92 (MQ=255)
                                                                                      aTGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatatt                                                >  2:10848242‑M1/1‑87 (MQ=255)
                                                                                       tGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattg                                               <  2:3810605‑M1/140‑55 (MQ=255)
                                                                                           aGCTCAAAGTGTGCCGTAGTTCACGATCTCGAAAGATAATTTATAACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgcctttttaaaatgtgatcgatatatttgaaatcaagtttcgcatattgaaat                                           >  2:826760‑M1/1‑82 (MQ=255)
                                                                                           aGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaatgtgatcgatatatttgaaatcaagtttcgcatattgaaat                                           >  1:8650821‑M1/1‑82 (MQ=255)
                                                                                           aGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaat                                           >  1:7884354‑M1/1‑82 (MQ=255)
                                                                                           aGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaat                                           >  2:2007985‑M1/1‑82 (MQ=255)
                                                                                           aGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaat                                           >  1:627965‑M1/1‑82 (MQ=255)
                                                                                             cgcAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattt                                         >  1:7195754‑M1/1‑80 (MQ=255)
                                                                                             cgcAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattt                                         >  2:2929605‑M1/1‑80 (MQ=255)
                                                                                               cAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaatttta                                       <  1:6684770‑M1/140‑63 (MQ=255)
                                                                                               cAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTGATAACCAATTGAATTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaatttta                                       <  1:4248014‑M1/140‑63 (MQ=255)
                                                                                                    tgtgCCGTAGTTCACGATCTCGACAGATAATTTATAACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagcca                                  >  1:5293182‑M1/1‑73 (MQ=255)
                                                                                                    tgtgCCGTAGTTCACGATCTCGACAGATAATTTATAACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagcca                                  >  2:6361049‑M1/1‑73 (MQ=255)
                                                                                                      tgCCGTAGTTCACGATCTCGACAGATAATTTATAACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaa                                >  1:6328062‑M1/1‑71 (MQ=255)
                                                                                                       gCCGTAGTTCACGATCTCGACAGATAATTTATAACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaa                               >  1:6537971‑M1/1‑70 (MQ=255)
                                                                                                            aGTTCACGATCTCGACAGATAATTTATAACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcg                          <  2:1812603‑M1/140‑76 (MQ=255)
                                                                                                            aGTTCACGATCTCGACAGATAATTTATAACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcg                          <  1:2702360‑M1/140‑76 (MQ=255)
                                                                                                              ttCACGATCTCGACAGATAATTTATAACCCATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgat                        >  1:3005333‑M1/1‑63 (MQ=255)
                                                                                                              ttCACGATCTCGACAGATAATTTATAACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgat                        >  2:5979476‑M1/1‑63 (MQ=255)
                                                                                                              ttCACGATCTCGACAGATAATTTATAACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgat                        >  2:4828803‑M1/1‑63 (MQ=255)
                                                                                                              ttCACGATCTCGACAGATAATTTATAACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgat                        >  2:10067420‑M1/1‑63 (MQ=255)
                                                                                                              ttCACGATCTCGACAGATAATTTATAACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgtgaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgat                        >  1:1259842‑M1/1‑63 (MQ=255)
                                                                                                              ttCACGATCTCGACAGATAATTTATAACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgcc                                                                                             >  2:10806129‑M1/1‑63 (MQ=255)
                                                                                                                cACGATCTCGACAGATAATTTATAACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgatca                      >  2:5151004‑M1/1‑61 (MQ=255)
                                                                                                                cACGATCTCGACAGATAATTTATAACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgatca                      >  1:6642503‑M1/1‑61 (MQ=255)
                                                                                                                cACGATCTCGACAGATAATTTATAACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgatca                      >  1:5159277‑M1/1‑61 (MQ=255)
                                                                                                                  cGATCTCGACAGATAATTTATAACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgatcaaa                    >  2:9514448‑M1/1‑59 (MQ=255)
                                                                                                                   gATCTCGACAGATAATTTATAACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgatcaaaa                   >  1:6844207‑M1/1‑58 (MQ=255)
                                                                                                                   gATCTCGACAGATAATTTATAACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgatcaaaa                   <  1:2484681‑M1/140‑83 (MQ=255)
                                                                                                                   gATCTCGACAGATAATTTATAACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgatcaaaa                   >  1:4120830‑M1/1‑58 (MQ=255)
                                                                                                                     tctcGACAGATAATTTATAACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgatcaaaaaa                 >  1:4784914‑M1/1‑56 (MQ=255)
                                                                                                                        cGACAGATAATTTATAACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgatcaaaaaaaca              >  2:3846313‑M1/1‑53 (MQ=255)
                                                                                                                        cGACAGATAATTTATAACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgatcaaaaaaaca              >  2:8684367‑M1/1‑53 (MQ=255)
                                                                                                                        cGACAGATAATTTATAACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgatcaaaaaaaca              <  1:10561281‑M1/140‑88 (MQ=255)
                                                                                                                        cGACAGATAATTTATAACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgatcaaaaaaaca              >  1:10805011‑M1/1‑53 (MQ=255)
                                                                                                                        cGACAGATAATTTATAACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgatcaaaaaaaca              >  2:7261859‑M1/1‑53 (MQ=255)
                                                                                                                        cGACAGATAATTTATAACCAATTGATTTTCATGTCTTTTGAAAGTCATCAATCagattgccttgttataaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgatcaaaaaaaca              <  2:1939072‑M1/140‑88 (MQ=255)
                                                                                                                        cGACAGATAATTTATAACCAATTGATGTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgatcaaaaaaaca              >  2:5663892‑M1/1‑53 (MQ=255)
                                                                                                                          aCAGATAATTTATAACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatnaagtttcgcatattgaaattttaagccaaaaaagcgatcaaaaaaacaag            <  1:10139172‑M1/140‑90 (MQ=255)
                                                                                                                          aCAGATAATTTATAACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgatcaaaaaaacaag            <  2:1628171‑M1/140‑90 (MQ=255)
                                                                                                                          aCAGATAATTTATAACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagagtgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgatcaaaaaaacaag            <  2:2616535‑M1/140‑90 (MQ=255)
                                                                                                                            aGATAATTTATAACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatattttaaatcaagtttcgcatattgaaattttaagccaaaaaagcgatcaaaaaaacaagga          <  1:1525618‑M1/140‑92 (MQ=255)
                                                                                                                              aTAATTTATAACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgatcaaaaaaacaaggaag        >  2:2858780‑M1/1‑47 (MQ=255)
                                                                                                                                aaTTTATAACCACTTGATTTTTATGTATTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatctttgaaatcaagtttcgcatattgaaattttaagccaaacaagcgatcaaaaaaacacggaagcc      <  2:8587459‑M1/140‑96 (MQ=255)
                                                                                                                                aaTTTATAACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgatcaaaaaaacaaggaagcc      <  1:1447004‑M1/140‑96 (MQ=255)
                                                                                                                                aaTTTATAACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgatcaaaaaaacaaggaagcc      <  1:897835‑M1/140‑96 (MQ=255)
                                                                                                                                aaTTTATAACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgatcaaaaaaacaaggaagcc      <  1:8416474‑M1/140‑96 (MQ=255)
                                                                                                                                 aTTTATAACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagtttgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaatgttaagccaaaaaagcgatcaaaaaaacaaggaagcct     >  2:8918492‑M1/1‑44 (MQ=255)
                                                                                                                                 aTTTATAACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgatcaaaaaaacaaggaagcct     <  2:543389‑M1/140‑97 (MQ=255)
                                                                                                                                 aTTTATAACAAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgatcaaaaaaacaaggaagcct     <  2:9310471‑M1/140‑97 (MQ=255)
                                                                                                                                   ttATAACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgatcaaaaaaacaaggaagcctgg   >  1:6137461‑M1/1‑42 (MQ=255)
                                                                                                                                    tataACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgatcaaaaaaacaaggaagcctggg  <  1:522803‑M1/140‑100 (MQ=255)
                                                                                                                                         |                                                                                                                                       
CTGGCTTCCGGCTGGACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACAATTGATTTTTATGTCTTTTGAAATTCATCAATCCTGTTGACAATTAATCATCGGCATAGTATATCGGCATAGTATAATACGACAAGGTGAGGAACTAAACCCAGGAGGCAGATCATGAGTCTGAAAGAAAAA  >  NZ_CP025268/3743153‑3743423

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: