| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP025268 | 3,864,439 | +C | pseudogene (1083/1613 nt) | CXP41_RS20140 ← | PTS sugar transporter subunit IIB |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP025268 | 3,864,437 | 1 | . | C | 98.8% | 1980.8 / 12.4 | 572 | pseudogene (1085/1613 nt) | CXP41_RS20140 | PTS sugar transporter subunit IIB |
| Reads supporting (aligned to +/- strand): ref base . (4/3); new base C (271/294); total (275/297) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.16e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 604 total aligned reads displayed.
GCAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTCAATCAGACCTCCG‑CCAT‑‑‑GTT‑‑‑CACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATG > NZ_CP025268/3864298‑3864568 | gCAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCg < 1:2297631/140‑1 (MQ=255) cAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCG‑c > 2:4783115/1‑140 (MQ=255) cAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAAGGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCG‑c < 2:5620984/140‑1 (MQ=255) tCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCG‑cccatg < 1:9318232/140‑5 (MQ=255) aGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑Gtt < 2:2965091/140‑1 (MQ=255) gtgtGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTg > 1:4077088‑M1/1‑139 (MQ=255) gtgCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcc > 1:4934311‑M1/1‑137 (MQ=255) gtgCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcc < 2:2554214‑M1/140‑4 (MQ=255) gtgCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcc > 2:6226409‑M1/1‑137 (MQ=255) gtgCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcc > 2:8851855‑M1/1‑137 (MQ=255) gtgCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcc < 1:6889814‑M1/140‑4 (MQ=255) gtgCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGAGTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGCTCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcc > 2:2133805‑M1/1‑137 (MQ=255) gtgCGGAAAACCACGAAGGACAGCAGGGTAAAGCACAACCCACTCGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGCTCCAGATTAGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcc < 2:4129313‑M1/140‑4 (MQ=255) gCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgccca < 1:5702739‑M1/140‑6 (MQ=255) gCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgccca < 1:6547740‑M1/140‑6 (MQ=255) cGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccac < 1:8809178‑M1/140‑7 (MQ=255) cGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccac > 1:9587302‑M1/1‑134 (MQ=255) gAAAACCACGAAGTACAGCATGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccacca < 2:7464392‑M1/140‑9 (MQ=255) aaCCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacac < 1:8191916‑M1/140‑12 (MQ=255) aCCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacacc > 1:1305558‑M1/1‑128 (MQ=255) aCCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaac > 2:7110440‑M1/1‑128 (MQ=255) ccACGAAGTACCGCAGGGTAAAGCACAACCCAATGGCGATGTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacacca < 2:9813321‑M1/140‑14 (MQ=255) ccACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacacca < 1:6207541‑M1/140‑14 (MQ=255) ccACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacacca < 1:5612499‑M1/140‑14 (MQ=255) ccACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacacca < 1:3717976‑M1/140‑14 (MQ=255) cACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaa > 1:395967‑M1/1‑126 (MQ=255) cGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTGTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccctag > 2:6928871‑M1/1‑124 (MQ=255) aaGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagag < 1:8432593‑M1/140‑19 (MQ=255) agcagGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacat > 2:1606219‑M1/1‑116 (MQ=255) gcagGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacatt < 1:9976139‑M1/140‑26 (MQ=255) ggTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacgg > 1:4757641‑M1/1‑111 (MQ=255) gTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattccggt < 2:819300‑M1/140‑31 (MQ=255) gTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggt > 2:10144348‑M1/1‑110 (MQ=255) tAAAGCCCAACCCAACGGCGAATTGGGTCCGCAACCTCTCCGCGTGGTTGCTGAACATCGGGATCCACTTTACCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GGTGCCCACCACACCAAACAGATACCCTACGGTc < 2:4868654/140‑1 (MQ=255) tAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggtc > 2:904679‑M1/1‑109 (MQ=255) tAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggtc > 1:10360160‑M1/1‑109 (MQ=255) tAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggtc > 1:1940006‑M1/1‑109 (MQ=255) tAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggtc < 1:10793060‑M1/140‑32 (MQ=255) tAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagag > 2:6561838‑M1/1‑109 (MQ=255) tAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacacca < 2:10486131‑M1/122‑14 (MQ=255) tAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCGCCGCCCAT‑‑‑GGTgcccaccacaccaaggagatacattacggtc > 2:7236372‑M1/1‑109 (MQ=255) aGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgac > 1:2470952‑M1/1‑106 (MQ=255) cacaACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAATCCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacat > 2:8498119‑M1/1‑104 (MQ=255) aaCCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattga > 1:3235224‑M1/1‑101 (MQ=255) aCCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgag > 1:7014934‑M1/1‑100 (MQ=255) aCCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgag > 1:10046209‑M1/1‑100 (MQ=255) cccAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgagg > 2:1197096‑M1/1‑99 (MQ=255) cAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggcc > 2:6394017‑M1/1‑97 (MQ=255) aTGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgc > 1:5854360‑M1/1‑95 (MQ=255) aTGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgc < 2:4307576‑M1/140‑46 (MQ=255) aTGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgc > 1:21305‑M1/1‑95 (MQ=255) aTGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgc > 1:4633933‑M1/1‑95 (MQ=255) tGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgcc > 1:3526980‑M1/1‑94 (MQ=255) ggCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgcca < 2:2867289‑M1/140‑48 (MQ=255) cGATTTGGGTCCGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacagtgcggccgccagc < 2:804236‑M1/140‑50 (MQ=255) cGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagc < 2:1348538‑M1/140‑50 (MQ=255) gATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagca < 1:10175808‑M1/140‑51 (MQ=255) aTTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattactgtcgacattgaggccgccagcac > 2:5918652‑M1/1‑89 (MQ=255) tttGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacg < 1:298862‑M1/140‑53 (MQ=255) tGGGTCAGCATCCTCTCCGCGTGGTTGCTGCACCTCGGGATCCAGATTTGCGGTAAACCCTAGTCAATCAGACCTCCGCCCATGGGGCC‑‑‑CCCCACACCACAGAGATACATTACGGTCGACATTGACGCCGCCAGCACGGc < 2:6458630/140‑1 (MQ=255) gTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtg < 2:7705302‑M1/140‑58 (MQ=255) catcatCTCCGCGTGGTTGCTGAACCTCGGGATCCAGTTTTGCGGTAACACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgcctgcacggcgtgtcccg > 2:2301871‑M1/1‑78 (MQ=255) catcatATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattccggtcgacatggaggccgccagcacggcgtgtaccg > 2:8584029‑M1/1‑78 (MQ=255) tcatATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgca < 2:3791040‑M1/140‑65 (MQ=255) tcatATCCGCGTGGTTGCGGACCATCGGGAGCCAGTTTAGCGGTAACACCTAGTCAATCAGACCGCCGCCCAT‑‑‑GTTgcccaccacaccacagagatacatgacggtcgacattgaggccgccagcacggcgtgtaccgca < 2:6780146‑M1/140‑65 (MQ=255) tatCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgca < 2:4547985‑M1/137‑65 (MQ=255) tCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacag < 1:7477907‑M1/140‑70 (MQ=255) cgcgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagca < 1:7668070‑M1/140‑72 (MQ=255) gcgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaa > 2:1864416‑M1/1‑68 (MQ=255) gcgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacg > 2:3553582‑M1/1‑68 (MQ=255) gTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacg > 2:1967324‑M1/1‑66 (MQ=255) tGGTTGCTGACCATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccaccccaaagagatacattacggtcgacagtgaggccgccagcacggcgtgtaccgcaaacagcaacgg > 2:7806768‑M1/1‑65 (MQ=255) tGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacgg > 1:8085282‑M1/1‑65 (MQ=255) ggTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggt < 2:3429528‑M1/140‑77 (MQ=255) ggTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggt < 2:10654362‑M1/140‑77 (MQ=255) gTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtg < 2:9319799‑M1/140‑78 (MQ=255) ttGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtga > 2:3243139‑M1/1‑62 (MQ=255) aaggtCGGGATCCTGTTTTGCGGTGAATCCTTGGCAATCAGACCTCCGCCCAT‑‑‑GTTGCCCACCACACCAAAGAGGGACATTAGGGTCGACATTGAGGCCGCCAGCACGGCGTGTACAGCAAACTGCACCGGTGGATTGaa > 2:5387216/5‑140 (MQ=255) aaCATCGGGATCCAGTTTTGCGGTAAATCCTAGTCATTCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagataccttacggtcgccattgtggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaa > 1:2780066‑M1/1‑56 (MQ=255) aaCATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaa < 1:5020232‑M1/140‑85 (MQ=255) cGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacagga > 1:10584902‑M1/1‑51 (MQ=255) ggATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaag > 1:1711052‑M1/1‑49 (MQ=255) gATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaagg < 2:5064869‑M1/140‑93 (MQ=255) tCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggta > 1:4249281‑M1/1‑46 (MQ=255) tCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggta > 2:10727787‑M1/1‑46 (MQ=255) cAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaa > 1:5239905‑M1/1‑44 (MQ=255) cgttaaaACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccacagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcg < 2:9575572‑M1/137‑105 (MQ=255) ggTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcgg < 2:4024680‑M1/140‑106 (MQ=255) ggTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcgg < 2:3123483‑M1/140‑106 (MQ=255) cacctagtcAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcggttcgg < 1:7941919‑M1/136‑111 (MQ=255) aaCCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcggttcgg < 1:90250‑M1/140‑111 (MQ=255) aaCCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcggttcgg < 1:3602188‑M1/140‑111 (MQ=255) aTCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcggttcggtaattcccac < 1:6708587‑M1/140‑121 (MQ=255) aCCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcggttcggtaattcccaccagca < 1:4462941‑M1/140‑126 (MQ=255) ccTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcggttcggtaattcccaccagcat < 1:7102821‑M1/140‑127 (MQ=255) ccTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcggttcggtaattcccaccagcat < 1:6411285‑M1/140‑127 (MQ=255) ccTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcggttcggtaattcccaccagcat > 1:5421841‑M1/1‑14 (MQ=255) cTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggttaattccagcggttcggtaattcccaccagcatg < 1:1522056‑M1/140‑128 (MQ=255) cTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcggttcggtaattcccaccagcatg > 1:42989‑M1/1‑13 (MQ=255) cTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcggttcggtaattcccaccagcatg < 1:9787464‑M1/140‑128 (MQ=255) | GCAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTCAATCAGACCTCCG‑CCAT‑‑‑GTT‑‑‑CACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATG > NZ_CP025268/3864298‑3864568 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |