| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP025268 | 4,542,898 | (A)6→7 | pseudogene (27/602 nt) | fimB → | type 1 fimbria switch DNA invertase FimB |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP025268 | 4,542,892 | 1 | . | A | 98.9% | 4161.2 / 24.0 | 1096 | pseudogene (21/602 nt) | fimB | type 1 fimbria switch DNA invertase FimB |
| Reads supporting (aligned to +/- strand): ref base . (8/4); new base A (643/440); total (651/445) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.71e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 1199 total aligned reads displayed.
TCCACTTACGTTAGTTATTAAGCAAACGTTCGCTTTTATAAACATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAAC‑AAAA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGACTTTGCTTTGTTTTATTCATGGTTTCCGGGCGAGTGAAATTTGT > NZ_CP025268/4542753‑4543026 | ccACTTACGTTAGTTATTAAGCAAACGTTCGCTTTTATAAACATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAAC‑a < 1:8172846/140‑1 (MQ=255) aCTTACGTTAGTTATTAAGCAAACGTTCGCTTTTATAAACATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAAC‑aaa > 1:8406157/1‑140 (MQ=255) cTTACGTTAGTTATTAAGCAAACGTTCGCTTTTATAAACATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAAC‑aaaa > 2:1177183/1‑140 (MQ=255) cTTACGTTAGTTATTAAGCAAACGTTCGCTTTTATAAACATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAAC‑aaaa > 1:7790988/1‑140 (MQ=255) tagttaTTAAGCAAACGTTCGCTTTTATAAACATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAAC‑aaaa‑aaaggaa < 1:5625933/140‑6 (MQ=255) tagttaTTAAGCAAACGTTCGCTTTTATAAACATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAAC‑aaaa‑aaaggaa < 2:7668315/140‑6 (MQ=255) ttattaAGCAAACGTTCGCTTTTATAAACATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAAA‑AAGGAACtt > 2:136983/1‑140 (MQ=255) ttattaAGCAAACGTTCGCTTTTATAAACATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAAA‑AAGGAACtt > 1:6092800/1‑140 (MQ=255) ttattaAGCAAACGTTCGCTTTTATAAACATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAAC‑aaaa‑aaagg < 2:3122941/135‑4 (MQ=255) taAGCAAACGTTCGCTTTTATAAACATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAAC‑aaaa‑aaagg < 2:3559146/131‑4 (MQ=255) aaGCAAACGTTCGCTTTTATAAACATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGAGCGCGTCTGTAATTATAAGTGAAAAACGATGAAGAATAATGCTGATAACAAAAA‑AAGGAACTTCCTGa > 2:10890746/1‑140 (MQ=255) tcAAACGTTCGCTTTTATAAACATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGTCTGATAACAAAAA‑AAGGAACTTCCTGAcc < 2:6944093/139‑1 (MQ=255) cAAACGTTCGCTTTTATAAACATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAAA‑AAGGAACTTCCTGAccc < 1:2257257/140‑1 (MQ=255) aaaCGTTCGCTTTTATAAACATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAAA‑AAGGAACTTCCTGACCCa > 1:8847780/1‑140 (MQ=255) aaaCGTTCGCTTTTATAAACATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAAA‑AAGGAACTTCCTGACCCa > 1:181137/1‑140 (MQ=255) aaCGTTCGCTTTTATAAACATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAAA‑AAGGAACTTCCTGACCCAt > 1:7201814/1‑140 (MQ=255) aaCGTTCGCTTTTATAAACATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAAA‑AAGGAACTTCCTGACCCAt > 1:2088693/1‑140 (MQ=255) aCGTTCGCTTTTATAAACATAATCAGGATAAAAATGTTGGATTAAAGCTAACCAAGCACAGCTAGTGCGCGTCTGTAATAATAAGGGAAAAACGATGAAGAATAAGGATGATAAA‑AAAATAAGGAACTTCCTGACCCATa > 1:741928/1‑140 (MQ=255) gTTCGCTTTTATAAACATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAAA‑AAGGAACTTCCTGACCCATAGt > 2:7123668/1‑140 (MQ=255) tCGCTTTTATAAACATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAAA‑AAGGAACTTCCTGACCCATAGTGa < 1:344375/140‑1 (MQ=255) cGCTTTTATAAACATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAAA‑AAGGAACTTCCTGACCCATAGTGaa > 1:7584608/1‑140 (MQ=255) ttATAAACATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAAA‑AAGGAACTTCCTGACCCATAGTGAAATCGa > 2:2232473/1‑140 (MQ=255) ttATAAACATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAAA‑AAGGAACTTCCTGACCCATAGTGAAATCGa > 2:3934236/1‑140 (MQ=255) ttATAAACATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAAA‑AAGGAACTACCTGACCCATAGTGAAATCGa > 2:3303986/1‑140 (MQ=255) aaaCATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAAA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCa < 2:2385527/140‑1 (MQ=255) aTAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAAA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTcc > 1:1517449/1‑140 (MQ=255) aTAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAAA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTcc > 2:2722655/1‑140 (MQ=255) aaTCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAAA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATAACTCCtt > 2:10020318/1‑140 (MQ=255) cAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCTCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAAA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTaaa < 2:5346353/140‑1 (MQ=255) cAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAAA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTaaa < 2:1551488/140‑1 (MQ=255) cAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAAA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTaaa < 2:5793588/140‑1 (MQ=255) cAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAAA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTaaa < 2:5996389/140‑1 (MQ=255) cAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAAA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTaaa < 2:6632757/140‑1 (MQ=255) ggATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAAA‑AAGGAACTTCCTGACCCATAGTGAAAGCGAATCACTCCTTAAagc < 2:4059500/140‑1 (MQ=255) gATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAAA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAagca > 2:4173032/1‑140 (MQ=255) gATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAAA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAagca > 1:5062073/1‑140 (MQ=255) aTAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAAA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAagcag > 2:10500301/1‑140 (MQ=255) tAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAAA‑AAGGAACTTc < 1:2593624/102‑1 (MQ=255) aaaaTGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAAA‑AAGGAACTTCCTGACCCATAGTGAAATCGAAt < 1:1090319/122‑1 (MQ=255) aaaTGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAAA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCaaa > 2:1674375/1‑140 (MQ=255) gTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAAA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATAcc < 2:7373940/140‑1 (MQ=255) gTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAAA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATAcc < 2:2014804/140‑1 (MQ=255) ttGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAAA‑AAGGAACTTcc > 1:138163/1‑95 (MQ=255) ttGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAAA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCg > 1:10017151/1‑140 (MQ=255) ttGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAAA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCg > 1:697381/1‑140 (MQ=255) ttGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAAA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCg > 2:6794839/1‑140 (MQ=255) tGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAAA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCgg < 2:9398171/140‑1 (MQ=255) tGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAAA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATg < 2:4977881/140‑1 (MQ=255) cTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAAA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATgca < 1:278128/140‑1 (MQ=255) cTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAAA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATgca < 1:1224718/140‑1 (MQ=255) cTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAAA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATgca < 1:10746154/140‑1 (MQ=255) tAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAAA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATgcag < 1:4773954/140‑1 (MQ=255) aaCCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAAA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATgcagc > 1:6330045/1‑140 (MQ=255) aCCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAAA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATgcagca < 2:8992562/140‑1 (MQ=255) cccAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAAA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCAc > 2:10171910/1‑140 (MQ=255) ccAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAAA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACg < 1:4401281/140‑1 (MQ=255) aGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAAA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTa > 2:9772754/1‑140 (MQ=255) cacaGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAAA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAat > 2:8815437/1‑140 (MQ=255) acaGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAAA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAatt > 2:8380403/1‑140 (MQ=255) acaGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAAA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAatt < 2:5154991/140‑1 (MQ=255) caGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAAA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAatta < 2:1795441/140‑1 (MQ=255) cTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAAA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTg > 2:8084566/1‑140 (MQ=255) cTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAAA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTg > 1:5813975/1‑140 (MQ=255) gTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAAA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCt > 1:4623013/1‑140 (MQ=255) gcgcGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAAA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGAAATTATTGTCTGa > 1:895955/1‑140 (MQ=255) gcgTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAAA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGAct < 1:3996406/140‑1 (MQ=255) gcgTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAAA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGAct < 2:6184962/140‑1 (MQ=255) cgTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAAA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGActt > 1:8038388/1‑140 (MQ=255) cgTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAAA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGActt > 2:472345/1‑140 (MQ=255) tCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAAA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATgcag < 2:2540014/117‑1 (MQ=255) tCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAAA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGActttg > 2:9228437/1‑140 (MQ=255) tGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAAA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGActttgct < 2:8585568/140‑1 (MQ=255) tGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAAA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGActttgct < 2:9578076/140‑1 (MQ=255) tGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAAA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGActttgct < 1:5467283/140‑1 (MQ=255) tGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAAA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGActttgct < 2:2859428/140‑1 (MQ=255) aTTATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAAA‑AAGGAACTTCCTGACCCATAGTGAAATCGACTCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGACTTTGCTTTGt < 1:10608565/140‑1 (MQ=255) ttATAAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAAA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGACTTTGCTTTGtt < 2:6358614/140‑1 (MQ=255) ataAGGGAAAAACGATGAAGAATAAGGCTGATAACAAAAA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGACTTTGCTTTGtttt > 1:9521197/1‑140 (MQ=255) aaGGGAAAAACGATGAAGAATAAGGCTGATAACAAAAA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGACTTTGCTTTGTTTTAt > 2:7954560/1‑140 (MQ=255) aaGGGAAAAACGATGAAGAATAAGGCTGATAACAAAAA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGACTTTGCTTTGTTTTAt > 1:4175157/1‑140 (MQ=255) ggAAAAACGATGAAGAATAAGGCTGATAACAAAAA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGACTTTGCTTTGTTTTATTCa > 1:9139121/1‑140 (MQ=255) ggAAAAACGATGAAGAATAAGGCTGATAACAAAAA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGACTTTGCTTTGTTTTATTCa < 1:2952512/140‑1 (MQ=255) ggAAAAACGATGAAGAATAAGGCTGATAACAAAAA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGACTTTGCTTTGTTTTATTCa < 1:9290419/140‑1 (MQ=255) ggAAAAACGATGAAGAATAAGGCTGATAACAAAAA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGACTTTGCTTTGTTTTATTCa < 2:10728409/140‑1 (MQ=255) ggAAAAACGATGAAGAATAAGGCTGATAACAAAAA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGACTTTGCTTTGTTTTATTCa < 1:8658376/140‑1 (MQ=255) ggAAAAACGATGAAGAATAAGGCTGATAACAAAAA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGACTTTGCTTTGTTTTATTCa < 2:4569022/140‑1 (MQ=255) aaaaaCGATGAAGAATAAGGCTGATAACAAAAA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGACTTTGCTTTGTTTTATTCATg > 2:557334/1‑140 (MQ=255) aaaaCGATGAAGAATAAGGCTGATAACAAAAA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGACTTTGCTTTGTTTTATTCATgg > 1:1921940/1‑140 (MQ=255) aaaaCGATGAAGAATAAGGCTGATAACAAAAA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGACTTTGCTTTGTTTTATTCATgg > 1:6792190/1‑140 (MQ=255) aaaCGATGAAGAATAAGGCTGATAAC‑AAAA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGACTTTGCTTTGTTTTATTCATGGtt > 1:2453644/1‑140 (MQ=255) tGAAGAATAAGGCTGATAACAAAAA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGACTTTGCTTTGTTTTATTCATGGTTTCCgg > 2:2930190/1‑140 (MQ=255) tGAAGAATAAGGCTGATAACAAAAA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGACTTTGCTTTGTTTTATTCATGGTTTCCgg > 2:3745227/1‑140 (MQ=255) gATAACAAAAA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGACTTTGCTTTGTTTTATTCATGGTTTCCGGGCGAGTGAAATTTg > 1:6668995/1‑140 (MQ=255) gATAACAAAAA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGACTTTGCTTTGTTTTATTCATGGTTTCCGGGCGAGTGAAATTTg > 1:6538634/1‑140 (MQ=255) aTAACAAAAA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGACTTTGCTTTGTTTTATTCATGGTTTCCGGGCGAGTGAAATTTgc > 1:9755963/1‑139 (MQ=255) aTAACAAAAA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGACTTTGCTTTGTTTTATTCATGGTTTCCGGGCGAGTGAAATTTgc > 1:5250812/1‑139 (MQ=255) aTAACAAAAA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGACTTTGCTTTGTTTTATTCATGGTTTCCGGGCGAGTGAAATTTGt > 1:10279864/1‑140 (MQ=255) aTAACAAAAA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGACTTTGCTTTGTTTTATTCATGGTTTCCGGGCGAGTGAAATTTGt > 1:3168529/1‑140 (MQ=255) aTAACAAAAA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGACTTTGCTTTGTTTTATTCATGGTTTCCGGGCGAGTGAAATTTGt > 1:3748293/1‑140 (MQ=255) aTAACAAAAA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGACTTTGCTTTGTTTTATTCATGGTTTCCGGGCGAGTGAAATTTGt > 2:10345130/1‑140 (MQ=255) | TCCACTTACGTTAGTTATTAAGCAAACGTTCGCTTTTATAAACATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAAC‑AAAA‑AAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGACTTTGCTTTGTTTTATTCATGGTTTCCGGGCGAGTGAAATTTGT > NZ_CP025268/4542753‑4543026 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |