Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NZ_CP0252681,292,8830AG23.9% 551.1 / 259.1 457intergenic (‑25/+22)CXP41_RS06830/CXP41_RS06835RtT sRNA/RtT sRNA
Reads supporting (aligned to +/- strand):  ref base A (92/245);  new base G (78/28);  total (176/281)
Fisher's exact test for biased strand distribution p-value = 2.73e-17
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.09e-01
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 461 total aligned reads displayed.

CTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCC  >  NZ_CP025268/1292747‑1293022
                                                                                                                                        |                                                                                                                                           
  cAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCg                                                                                                                                        <  1:10087192/140‑1 (MQ=11)
  cAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCg                                                                                                                                        <  2:2710210/140‑1 (MQ=11)
  cAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCGTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGTTTGAGAACTCCg                                                                                                                                        <  1:2483208/140‑1 (MQ=11)
  cAGCGCTGCGCGCTTCGCCCTTCGGGTCGGTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCg                                                                                                                                        <  2:7843284/140‑1 (MQ=11)
    gcgcggcgcgCGTCGCCCTTCGGGTCGGGGCCTGCGGCAACGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTCGACGCTTCTCATCCGTCCCCGCTGGGGCAGAATATTTGATTGCGGATTCGTGTGAGAAGTCCggg                                                                                                                                      <  2:8585051/140‑1 (MQ=11)
          cgcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCtttt                                                                                                                                <  2:4177958/140‑1 (MQ=11)
          cgcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCtttt                                                                                                                                <  2:6652333/140‑1 (MQ=11)
             gcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTGCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGaa                                                                                                                             <  2:3685552/140‑1 (MQ=11)
                  gCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGa                                                                                                                        <  1:6492012/140‑1 (MQ=11)
                  gCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGa                                                                                                                        <  1:7498424/140‑1 (MQ=11)
                   cccTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGAt                                                                                                                       <  2:7995628/140‑1 (MQ=11)
                    ccTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGAtg                                                                                                                      <  2:8881303/140‑1 (MQ=11)
                    ccTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGAtg                                                                                                                      <  1:896637/140‑1 (MQ=11)
                    ccTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGAtg                                                                                                                      <  1:8082467/140‑1 (MQ=11)
                     cTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGAtgg                                                                                                                     <  1:7865877/140‑1 (MQ=11)
                     cTTCGGGGCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCAAGTCGAACCGTGGTCGAAGCTTCTCATCCGTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGAtgg                                                                                                                     <  1:2217507/140‑1 (MQ=11)
                         gggTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATTTTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGAtggtggt                                                                                                                 <  2:6577311/140‑1 (MQ=11)
                            tCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTggg                                                                                                              <  1:9902727/140‑1 (MQ=11)
                              ggggCCTGCGGCAACGCTCTCTCGCTGGCGCTCAAGAAGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATGTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTggggg                                                                                                            <  2:6200229/137‑1 (MQ=11)
                              gTTGCCTGCGGCAACGCTCTCTCGCTGGNGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTggggg                                                                                                            <  1:5890377/140‑1 (MQ=11)
                              gTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTggggg                                                                                                            <  1:4659132/140‑1 (MQ=11)
                              gTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTggggg                                                                                                            <  1:6272067/140‑1 (MQ=11)
                              gTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTggggg                                                                                                            <  1:5582339/140‑1 (MQ=11)
                              gTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTAGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTggggg                                                                                                            <  1:6402849/140‑1 (MQ=11)
                              gTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCGTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTggggg                                                                                                            <  2:6359410/140‑1 (MQ=11)
                              gTTGCCTGCGGCAACGCACACTCGCGGGCGCTCAAGTCGAAACGTGGTCGAAGCTTATCATCCATACCCCCCTGGGCAGAATATTTGATTGCGGATTCGATTGAGAATTCCGGGGCTTTTTAAAGTGAtggtggtggtgg                                                                                                            >  1:587465/1‑140 (MQ=11)
                                tGCCTGCGGCAACGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGAtggtggt                                                                                                                 >  2:10421289/1‑133 (MQ=11)
                                tGCCTGCGGCAACGCACACTCGCTGGCGCACAAGTCGAACCTTGGTCGAACCTTCTCAACCATCCCCGCATGGGCAGAATATTTTATTGCGGATTCGTTTGTGAATTCAGGGGATTTTTAAAGTGATGGTGGTGGGGGaa                                                                                                          >  1:7293296/1‑140 (MQ=11)
                                   cTGCGGCTACGCTCTCTCGCTGGCTCTCATGTCGAAAGTTGGTCGTATCTTCTGATCCTTACCCGTTTGGGCAGATTAATTTATTTCGGATTCGTTTGAGAATTCCTGTTATTTTGAAAGTGATGGTGGTGGGGGAAGGa                                                                                                       <  2:7816722/140‑1 (MQ=2)
                                   cTGCGGCTACGCTCTCTCGCTGGCGCTCACGTCGAACCTTGGTCGAAGCTTCTCCTCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGa                                                                                                       <  2:3891426/140‑1 (MQ=11)
                                   cTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGa                                                                                                       <  2:5381096/140‑1 (MQ=11)
                                   cTGCGGCAACGCTCTCTCGCTGGCGCTCAAGTCGACCCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGa                                                                                                       <  1:10531940/140‑1 (MQ=11)
                                   cTGCGGCAACGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGa                                                                                                       <  2:5702391/140‑1 (MQ=11)
                                   cTGCGGCAACGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTGCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGTTTGAGACTTCCGGGGCTTTTGACAGTGATGGTGGTGGGGGACGGa                                                                                                       <  2:4744768/140‑1 (MQ=11)
                                   cTGCGGCAAAGCTCTCGCGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATACTGCCCCGCTTGGGCAGAATATTTGCTTGCGGATTCGTTTGAGAATTCCGGGTCTTTTGAAAGTGATGGTGGTGGGGGAAGGa                                                                                                       <  2:2128789/140‑1 (MQ=11)
                                   cTGCCGCAACGCTCGCTCGCTGGCGCCCACGTCGAACCCTGCTCGAAGCTTCTCCTCCGTCCCCGCTTGGGTAGAATATTGGATTGCCGATTCGTATGAGAATTCCGGGGCTTTTGAATGTGATGGTGTTGGGGGattta                                                                                                       <  2:7681522/140‑5 (MQ=255)
                                          aaCGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCa                                                                                                <  1:1931998/140‑1 (MQ=14)
                                            cGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAgc                                                                                              <  1:7556262/140‑1 (MQ=14)
                                                ctctcGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTggggg                                                                                                            >  1:6611793/1‑122 (MQ=11)
                                                ctctcGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTg                                                                                          <  2:10275515/140‑1 (MQ=14)
                                                 tctcGCTGGCGCTCATGTCGATCGTTGGTCGATGCTTCTCATCCTTCCCCGCTTGGGCAGATTTTTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTgc                                                                                         <  1:6958145/140‑1 (MQ=14)
                                                  ctcGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTgcg                                                                                        <  1:9541505/140‑1 (MQ=14)
                                                    cGCTGTCGCTCTAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTgcgcg                                                                                      <  2:6796745/140‑1 (MQ=11)
                                                       tGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCtt                                                                                   <  1:2124410/140‑1 (MQ=14)
                                                       tGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCtt                                                                                   <  1:4122093/140‑1 (MQ=14)
                                                        ggCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTc                                                                                  <  1:5337151/140‑1 (MQ=14)
                                                        ggCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGAGTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTc                                                                                  <  1:6767964/140‑1 (MQ=14)
                                                         gcgcTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTATTCGGCGCTTCGCGCATcc                                                                                 >  1:7062260/1‑139 (MQ=14)
                                                           gcTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGTATATGTGTTTGCGTATTCGCTTGAGATATCAGGGAGTGTGGAGAGTGCTTGTGGTGGGGGACGGCTTACTCAGGGCTGCGCGCTTCGcg                                                                               >  1:8620714/1‑139 (MQ=2)
                                                           gcTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGcc                                                                               <  2:10596521/140‑1 (MQ=14)
                                                             tcaagtcGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCt                                                                             <  1:5441027/134‑1 (MQ=14)
                                                               gAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTc                                                                           <  1:10024510/140‑1 (MQ=255)
                                                                     aaCCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTTATTGCGGATACGTTTGAGAATTCCGGGGCTTTTGACAGAGATGGTGGTGGGGGACGGCTTACTAGGAGCTGAGCGCTTCGCCCTTCGGGGCg                                                                     >  2:10040562/1‑140 (MQ=14)
                                                                          tggtCGAAGCTTCTCCTCCGTCCCCGCTTGGGCAGAATATTTGATGGCGGATTCGTTTGAGAATTCCGGGGCTTTAGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGcc                                                                <  2:7737642/137‑1 (MQ=14)
                                                                           ggtCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGTTTGTGACTTCCGGGTCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGccg                                                               >  2:4015306/3‑139 (MQ=11)
                                                                           ggtCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCt                                                               >  2:8155073/3‑140 (MQ=255)
                                                                           agtCGAAGCTTCTNATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCt                                                               >  1:9406326/3‑140 (MQ=255)
                                                                           agtCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCATCGCCCTTCGGGACGTTGCCt                                                               >  2:8301606/3‑140 (MQ=11)
                                                                            gtCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTg                                                              <  1:3995351/139‑1 (MQ=255)
                                                                                 aGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCa                                                         <  2:2924886/140‑1 (MQ=255)
                                                                                  gCTTCTCATCCTTCCCCGCTTGGGCAGACTATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTTCGCGCTTCGCCCGTCGGGTCGTTGCCTGCGGCaa                                                        >  1:4248618/1‑140 (MQ=14)
                                                                                       tcATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGctc                                                   >  2:9714525/1‑140 (MQ=255)
                                                                                       tcATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGctc                                                   >  2:4639262/1‑140 (MQ=255)
                                                                                         ctCCGTCCCCGCTTGGGCAGATTAATTGATTGCGGATTCGTTTGAGCATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGctctc                                                 <  1:1392277/139‑1 (MQ=14)
                                                                                           ccTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCtctctc                                               >  1:2659250/1‑140 (MQ=255)
                                                                                             ttCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGc                                             >  1:3787419/1‑140 (MQ=255)
                                                                                             ttCCCCGCGTGGGCAGAATATGTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTGTGTCAGTGATGGTGGTGGGGGAAGGAGTACTCAGCGCTGCGCGCTTCGCCCTTCGGGGCGTGGCCGGCGGCAACGCTCTCgcgc                                             >  2:7035929/1‑140 (MQ=14)
                                                                                              tCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCt                                            >  1:1571565/1‑140 (MQ=255)
                                                                                              tCCACGCTTGGGCAGAATTTTTGATTTCGTATTAGTTTGAGAATTCCGGGTCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCACTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCt                                            <  2:2571458/140‑1 (MQ=14)
                                                                                               ccccGCTTGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCCGAGCTGCGCCCATCGCCCGTCGGGTCGTGGCCGGCGGCACAGCACTCTCGcgg                                           >  1:9058958/1‑138 (MQ=14)
                                                                                               ccccGCTTGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCATTCGGGTCGTTGCCGGCGGCAACGCACGCTCGcgg                                           >  1:4479144/1‑138 (MQ=14)
                                                                                                cccGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGTCGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTGGCCTGCGGCACCGCTCTCTCGCTgg                                          >  2:7089667/1‑139 (MQ=11)
                                                                                                   gCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGgcgc                                       >  1:9340914/1‑140 (MQ=255)
                                                                                                   gCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGACGTTGCCTGAGGCAACGGTCTCTCGCTGgcgc                                       >  1:841344/1‑140 (MQ=11)
                                                                                                    cttGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCt                                      <  2:9101798/138‑1 (MQ=255)
                                                                                                    cttGGGAATAATATTTGATTGCGGTTTCGTTTGAGTATTAGGGGGCTTTTGCAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCt                                      <  1:318635/138‑1 (MQ=14)
                                                                                                    cgtGGGCATAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCt                                      <  2:4413190/138‑1 (MQ=255)
                                                                                                     aTGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTGGCCGGCGGCAAAGGGCTCTCGCGGGCGCTc                                     >  1:3402200/1‑140 (MQ=11)
                                                                                                      tGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCg                                    >  2:8475281/1‑140 (MQ=255)
                                                                                                        ggCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAg                                  >  2:744562/1‑140 (MQ=255)
                                                                                                        ggCAGAATATTTGATTGCGGATTCGGTTGAGACTTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCCACGCTCTCTCGCGGCCGCTCCAg                                  >  2:5875644/1‑140 (MQ=14)
                                                                                                        ggCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAg                                  >  2:3504886/1‑140 (MQ=255)
                                                                                                        ggCAGAATATTTGATTGCGGAGGCGCGTGAGAGTTCAGGGACTTTTGACAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCGGGcgcgcgcg                                  >  1:7179390/1‑138 (MQ=11)
                                                                                                         gCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAgt                                 >  2:10166187/1‑139 (MQ=255)
                                                                                                         gCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAgg                                 >  1:10247542/1‑139 (MQ=255)
                                                                                                          cAGAATCTTTGATTGCGGATTCGATTGAGTGTTCTGGTACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAgtc                                <  1:8296820/140‑3 (MQ=11)
                                                                                                          cAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGcc                                <  1:1145760/140‑1 (MQ=255)
                                                                                                                atTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGAGGCAACGCTCTCTCGCTGACGCACGACACGCACCt                          >  2:8413757/1‑140 (MQ=14)
                                                                                                                  ttGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCttg                        >  2:10847862/1‑139 (MQ=11)
                                                                                                                   tGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCaa                                                        >  2:4492792/1‑107 (MQ=255)
                                                                                                                    gATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCGGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTagt                      <  2:1288916/140‑3 (MQ=255)
                                                                                                                       tGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTAATCAGCGCTTCGCGCTTCACCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTTTCGCTCGAGTCGAACCTTTGTCGa                   >  2:9361949/1‑140 (MQ=11)
                                                                                                                        tcGGATTCGTTTGAGAATTCCGGGTCTTTTGAAAGTGATGGTGGTGGGGGAATGATGACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGaa                  <  2:5014836/139‑1 (MQ=14)
                                                                                                                        gCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGaa                  <  1:4922428/140‑1 (MQ=255)
                                                                                                                         cGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAg                 >  2:9822384/1‑140 (MQ=255)
                                                                                                                         cGGATTCGCTTGAGAGGTCAGGGACTTTTGAAAGTGATGGGGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCGTCGGGGCGTTGGCTGCGGCAAAGCTCTCTCGCTGTCGCGAGATCCGAAGCGTGGTCGAAg                 >  2:2402624/1‑140 (MQ=11)
                                                                                                                             ttCGTTTGAGAATTCCTGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTtc             <  2:1489662/140‑1 (MQ=255)
                                                                                                                                gtttGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCa          <  2:185891/138‑1 (MQ=255)
                                                                                                                                 tttGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCAt         <  1:3608605/139‑1 (MQ=255)
                                                                                                                                      gtaTTCCGGGTCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTc    <  1:5205183/138‑1 (MQ=255)
                                                                                                                                        |                                                                                                                                           
CTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCC  >  NZ_CP025268/1292747‑1293022

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑