BRESEQ :: Evidence

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NZ_CP025268	1,292,991	0	C	T	61.5%	256.9 / inf	367	noncoding (46/132 nt)	CXP41_RS06835	RtT sRNA
Reads supporting (aligned to +/- strand): ref base C (43/91); new base T (115/99); total (174/193)
Fisher's exact test for biased strand distribution p-value = 1.01e-04
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 375 total aligned reads displayed.

GCAGAATATTTGATTGCGGATTCGCTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTT  >  NZ_CP025268/1292852‑1293126

gCAGTATATTTGATTGCGGATTCGTTTGNGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGc                                                                                                                                         <  1:5881688/140‑1 (MQ=255)

gCAGAATATTTGATTGGGGCTTCGTTTGAGTATTACTGGTCTTTTGTAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGc                                                                                                                                         <  1:8994958/140‑1 (MQ=14)

  aGAATAGTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCg                                                                                                                                       <  1:8605386/140‑1 (MQ=255)

   gAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACACAGATCTGAGCCCTTCGCCCTTCTGGTCGTTTCCTGCGGCAAAGCTCTCTCGCTCACCCTCGAGCCGa                                                                                                                                      >  2:9876204/1‑140 (MQ=14)

     atatTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAAc                                                                                                                                    <  1:4074183/140‑1 (MQ=255)

      tatTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAAcc                                                                                                                                   <  1:10071925/140‑1 (MQ=255)

      tatTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGGAGAAcc                                                                                                                                   >  2:436159/1‑140 (MQ=11)

         ttGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCttg                                                                                                                                >  1:626820/1‑139 (MQ=255)

           gATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCttggt                                                                                                                              <  1:7071739/140‑4 (MQ=255)

           gATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTagt                                                                                                                              <  1:8749220/140‑3 (MQ=255)

              tggggATTCGTTTGAGTTTTGCGGGGCTTTTGAATGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGa                                                                                                                           <  2:2978649/137‑1 (MQ=14)

              tGCGGATTCGTTTGAGATTTCGGGGGCTTTTGTAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGa                                                                                                                           <  2:5785070/140‑1 (MQ=14)

              tGCGGATTCGTTTGAGAATTCCGGGTCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGa                                                                                                                           <  2:8567760/140‑1 (MQ=255)

              tGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGa                                                                                                                           <  1:9714525/140‑1 (MQ=255)

              tGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGa                                                                                                                           >  1:6757451/1‑140 (MQ=255)

              tGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGa                                                                                                                           >  1:6424689/1‑140 (MQ=255)

              tGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGa                                                                                                                           >  2:9170527/1‑140 (MQ=255)

              tGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGa                                                                                                                           >  1:536139/1‑140 (MQ=255)

              tGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGAGAGCTTCTCCCTTCTGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGTCGCTCGAGCCGAACAATAGTCGa                                                                                                                           >  2:1852225/1‑140 (MQ=14)

               gCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGaa                                                                                                                          <  1:4922428/140‑1 (MQ=255)

               gCGGATTCGTTCCAGAATTCCGGGGCTTTTGACAGAGCTTGCGGTGGGGGAAGGATGACTCCGCGATGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGaa                                                                                                                          <  2:5141923/140‑1 (MQ=14)

               gCGGATTCCCTAGAGTTTTCCGGGGCTTTTTTAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGaa                                                                                                                          <  1:3231416/140‑1 (MQ=11)

                cGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAg                                                                                                                         <  1:7519149/140‑1 (MQ=255)

                cGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAg                                                                                                                         >  1:7386896/1‑140 (MQ=255)

                cGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAAAGCTCTCTCGCTGACGCACGAGCCGAACCTTAGTCGAAg                                                                                                                         >  1:9390579/1‑140 (MQ=255)

                    gtCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTtc                                                                                                                     <  2:6821666/139‑1 (MQ=255)

                     tCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGTGGCAACGCTCTCTCGCTTTCGCTCGATTCGAACCTTAGTCGAAGGTtct                                                                                                                    <  1:2199109/140‑1 (MQ=14)

                        tttGAGTATTCCGGTGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCAt                                                                                                                 <  2:2229729/139‑1 (MQ=255)

                        tttGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCAt                                                                                                                 <  1:1460011/139‑1 (MQ=255)

                        tttGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCAt                                                                                                                 <  1:806927/139‑1 (MQ=255)

                             gtaTTCCGGGTCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTc                                                                                                            <  1:5205183/138‑1 (MQ=255)

                             gcaTTCCGGGGCTTTTGTAAGAGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTc                                                                                                            <  2:781138/138‑1 (MQ=255)

                             gaATTCCGGGTCTTTTGAAAGTGATGGTGGCGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTc                                                                                                            <  2:10510111/140‑1 (MQ=255)

                                 tCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTAATCATCGCTGCGCTCATCACCCTTCGGGCCGTTGCCTGTGGCAACGGTCTCTCGCTGACGCTCGAGACGAACCTTAGTCGAAGCTTCTCAACCTTCCCCg                                                                                                        >  1:6921728/1‑140 (MQ=11)

                                  ccGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGACGAACCTTAGTCGAAGCTTCTCATCCTACCCCGc                                                                                                       >  2:7145508/1‑140 (MQ=255)

                                    ggggCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCAt                                                                                                     <  1:8923348/140‑1 (MQ=21)

                                       tcTTTTGAAAGGGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATggg                                                                                                  <  2:9384820/139‑1 (MQ=12)

                                        cTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGc                                                                                                 >  2:8062404/1‑140 (MQ=17)

                                         ttttGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCa                                                                                                <  1:8278054/140‑1 (MQ=17)

                                           ttGCAAGAGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGa                                                                                              <  2:9025957/140‑1 (MQ=12)

                                           tagAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGa                                                                                              <  2:4551804/138‑1 (MQ=17)

                                                                gAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGtt                                                                         <  1:3418900/140‑1 (MQ=255)

                                                                 aaGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGGCGAACCGTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGtgg                                                                        >  2:5986865/1‑138 (MQ=11)

                                                                  aGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTTGGGCAACGCTCTCTCGCTGGCGCTCGATTCGTACCTTGGTCGAAGCTTCTCAGCGGTCCCCGCAGGGGGAGTATATTTAATTGGGGAttggttgg                                                                       >  2:5471746/1‑140 (MQ=11)

                                                                   ggATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTggg                                                                      <  1:1197338/140‑1 (MQ=255)

                                                                    gATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGa                                                                     <  1:4053463/140‑1 (MQ=255)

                                                                     aTTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCg                                                                                                                                       >  2:5301182/1‑73 (MQ=34)

                                                                       tACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTTGTCGATGCTTCTCAGCCTTGCCCGCAGGGGCAGTATATTTGATTGCGGATTCGGTGGGGAGt                                                                  >  2:9305095/1‑140 (MQ=11)

                                                                         cTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCGTGGTCGAAGGTTCTCATCCTTCCCCGCATGGGCCCAATATTTAATTGCGGATTAGTTTGGAAGtta                                                                >  2:1219087/1‑139 (MQ=11)

                                                                         cTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCGTGGTCGAAGCGTCTCATCCTTCCCCGCAGGGGGCGAATATTTAATTGCGGATTCGGTGGGAAggtg                                                                >  1:9252951/1‑137 (MQ=11)

                                                                            aGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCGTCGGCAACGCTCTCTCGCTTGCGCTCGAGTCGAACCTGGGTCGAAGCATCACATCCATACCCGCATGGGCAGAATATTTAATTGCGGATAGGTTGGGAAGTACAgg                                                             >  2:488453/1‑140 (MQ=11)

                                                                              cgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGTCGCTCGAGTCGAACCTTTGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGATGGGAAGTTCAGGGa                                                           <  1:4596682/140‑1 (MQ=14)

                                                                              cgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCg                                                                                                                                       <  1:10648559/64‑1 (MQ=35)

                                                                              cgcTGCGCGCTTCGCCCTTCGGGTCGTGGCCTGCGGCAACGCGCTCTCGCTGGCGGTCGAGTCGAACCGTGGTCGAAGCGTCACATACGTCCCCCCAGGGGCAGAATATTTAATTTCGGGTTGGGGGGGTAGTTCAGGGa                                                           >  1:2697173/1‑140 (MQ=2)

                                                                              cgcTGCGCGCTTCGCCCTTCGGGTCGGTGCCTGCGGCAACGCTCTGTCGCTGGCGCGCGAGGCGAACCTTGGTCGATGCTTCTCATCCTTCCCCGCCGGGGCCGAGTAGTTTGTTGGGGATTGGGTGGGAGGTTCAgggg                                                           >  2:3869613/1‑139 (MQ=2)

                                                                               gcTGCGCGCTTCGCCCTTCGGGTCGTTGCCGGCGGCAACGCTCTCTCGCTNGCGCGCGAGTCGAACCGTGGGCGAAGCTTCGCAAACTTCCCCCCCTGGGCCGAATATATAATTGCGGTTTCGGGGGGAAGTTAAggggc                                                          >  1:10139825/1‑138 (MQ=2)

                                                                                   cgcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACtttt                                                      >  1:8321715/1‑140 (MQ=255)

                                                                                   cgcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCGTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACtttt                                                      >  2:2623643/1‑140 (MQ=14)

                                                                                   cgcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCAAGTCGCACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGTGCAGAATATTTTATTTCGGATTCGTTTGGAAGTTCAGGGACgttt                                                      >  2:4066772/1‑140 (MQ=11)

                                                                                   cgcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCGGGCGCGCGAGGCGAACCGTGGTCGAAGCGTCTCATCCTTCCCCGCCTGGGCAGGATATTTAATTGGGGTTTGGTTGGGGAGGTGAGGGTCtttt                                                      >  1:1748663/1‑140 (MQ=11)

                                                                                     cgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCTAGTCGAACCTTGGTCGAAGCTTCTCATCCGTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGa                                                    <  2:665431/140‑1 (MQ=14)

                                                                                           gCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCTAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGA                                              <  2:7241379‑M1/140‑1 (MQ=255)

                                                                                           gCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGA                                              >  2:8270480‑M1/1‑140 (MQ=255)

                                                                                           gCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGA                                              >  2:3132889‑M1/1‑140 (MQ=255)

                                                                                               ttCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGT                                          <  1:8458403‑M1/140‑1 (MQ=255)

                                                                                                tCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCCGACTATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTG                                         >  2:10053310‑M1/1‑140 (MQ=255)

                                                                                                tCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATTGTTAATTGCGGAGTCGTTGGGAAGTTCAGGGACTGTTGAAAGTGATGGTG                                         >  2:6295669‑M1/1‑140 (MQ=255)

                                                                                                      cGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCCTGGGCAGCATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGTAAGTGATGGGGGTGGGG                                   >  2:3968874‑M1/1‑140 (MQ=255)

                                                                                                        gtgCCTGCGGCAACGCTCTCTCGCTGGCGCTCTAGTCGAACCTTGGTCGAAGATTCTCATCCTTACCCGCTTGGGCAGAATATTTAATTGCGGATGCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGA                                 <  2:5888686‑M1/139‑1 (MQ=255)

                                                                                                              gCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATT                           >  2:8892131‑M1/1‑140 (MQ=255)

                                                                                                                ggCAACGCTCTCTCGCTGGCGCTCCAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTTATTGCGGATTAGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcg                         <  1:5595965‑M1/140‑3 (MQ=255)

                                                                                                                ggCAACGCTCTCCCGCTGGCGCTCGAGACGACCCATGGTCGAAGCTTCACCTCCGTCCCCGCATGGGCAGAATATTAAATTGCGGATTCGTTGGGCAGTTCCGGGACTTTTGAAAGTGATGGTGGCGGGGGAAGGAttcg                         <  1:10817812/140‑3 (MQ=11)

                                                                                                                 gCAACGCTCTCTCGCTGTCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcga                        <  2:8344382‑M1/140‑4 (MQ=255)

                                                                                                                  cAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTGAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgac                       >  2:7546694‑M1/1‑136 (MQ=255)

                                                                                                                   aaCGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCCGAAAATTTAATTGCGGATTCGTTGGGCAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGGAGGATTcgaac                      >  1:3013713‑M1/1‑135 (MQ=255)

                                                                                                                     cGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGtt                                                                         <  1:6791079/87‑1 (MQ=11)

                                                                                                                     cGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaacct                    >  2:1373214‑M1/1‑133 (MQ=255)

                                                                                                                      gCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaacctt                   <  1:10776780‑M1/140‑9 (MQ=255)

                                                                                                                        tctctcGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcg                 <  1:7629076‑M1/140‑11 (MQ=255)

                                                                                                                          tctcGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTAATTGCGGATTCGTTGGGa                                                                     <  2:2485535/86‑1 (MQ=11)

                                                                                                                           ctcGCTGTCGCTCGAGCCGAACCTTTGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTTATTGCGGATTCGTTGGCTAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaag              <  2:10749836‑M1/140‑14 (MQ=255)

                                                                                                                           ctcGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaag              <  1:4834126‑M1/140‑14 (MQ=255)

                                                                                                                            tcGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagt             >  1:2274214‑M1/1‑126 (MQ=255)

                                                                                                                              gCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATTTTTAATTGCGGATTCGGTGGGAAGTTCAGGGACTTTTGAAAGTGTTGGTGGTGGGGGAAGGATTcgaaccttcgaagtcg           >  2:1670869‑M1/1‑124 (MQ=255)

                                                                                                                               cTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGa                                                                     <  1:4217242/81‑1 (MQ=14)

                                                                                                                               cTGACGCTCGAGCCGAACCTTACTCGAAGCTTCTCAACCTTCCCCGCATGGGCCCAATATTTAAATGCGGATACGCTTTACCGATCAGGGCATTTGTACATAGATGGTGGTGGGCGAAGGATTACTCAACGCGGCGAGCt          >  2:8765778/1‑140 (MQ=255)

                                                                                                                                tggcgctCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgat         <  1:10318721‑M1/137‑19 (MQ=255)

                                                                                                                                tggcgctCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgat         <  1:1628235‑M1/137‑19 (MQ=255)

                                                                                                                                 ggcgcTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatg        >  2:9733186‑M1/3‑121 (MQ=255)

                                                                                                                                   cGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgac      <  1:3634132‑M1/140‑22 (MQ=255)

                                                                                                                                    gCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacg     >  1:7273113‑M1/1‑118 (MQ=255)

                                                                                                                                    gCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacg     >  2:1511120‑M1/1‑118 (MQ=255)

                                                                                                                                    gCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacg     >  2:1938335‑M1/1‑118 (MQ=255)

                                                                                                                                     ctctAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGTGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacgg    <  1:7993940‑M1/140‑24 (MQ=255)

                                                                                                                                     cTCGATTCGAACCTTGGTCGAAGCTTCTCATCCGTCCCCGCTTGGGCAGAATATTTAATTGCGGATTCGTTGGTTATTTCCGGTACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacgg    <  2:4733901‑M1/140‑24 (MQ=255)

                                                                                                                                     cTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacgg    <  2:3539063‑M1/140‑24 (MQ=255)

                                                                                                                                       cGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgangtcgatgacggca  <  1:5859103‑M1/140‑26 (MQ=255)

                                                                                                                                       cGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggca  <  2:5693725‑M1/140‑26 (MQ=255)

                                                                                                                                       cGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggca  <  1:3697757‑M1/140‑26 (MQ=255)

                                                                                                                                       cGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggca  <  1:436159‑M1/140‑26 (MQ=255)

GCAGAATATTTGATTGCGGATTCGCTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTT  >  NZ_CP025268/1292852‑1293126

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`