BRESEQ :: Evidence

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NZ_CP025268	3,505,559	0	T	A	21.4%	697.5 / 47.5	330	intergenic (+90/+62)	phoB/yhfS	DNA‑binding transcriptional regulator FrlR/aminotransferase class I/II‑fold pyridoxal phosphate‑dependent enzyme
Reads supporting (aligned to +/- strand): ref base T (81/165); new base A (65/2); total (161/169)
Fisher's exact test for biased strand distribution p-value = 1.62e-23
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 357 total aligned reads displayed.

TCTGCCGCGCCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATCGC  >  NZ_CP025268/3505420‑3505698

tctGCCGCGCCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCct                                                                                                                                             <  2:9680574/140‑1 (MQ=255)

tctGCCGCGCCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCct                                                                                                                                             <  2:2404872/140‑1 (MQ=255)

     cgcgCCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTccc                                                                                                                                        <  1:3669414/140‑1 (MQ=255)

       cgcCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCa                                                                                                                                      <  2:4733713/140‑1 (MQ=255)

         ccAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCaaa                                                                                                                                    <  1:7412717/140‑1 (MQ=255)

           aaTCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAAgg                                                                                                                                  <  1:3147883/140‑1 (MQ=255)

           aaTCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCACACCCAAACCCACACCCCaaaag                                                                                                                                  >  1:8524735/1‑138 (MQ=39)

             tCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAAgggg                                                                                                                                <  1:3480791/140‑1 (MQ=255)

                cATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGa                                                                                                                             <  1:3253376/140‑1 (MQ=255)

                   cACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAggg                                                                                                                          <  1:358537/140‑1 (MQ=255)

                     ccatAACGATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGGa                                                                                                                        <  2:5615482/137‑1 (MQ=255)

                      cTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTGCCCACAACCAAACCCACAACCCAAAGGGGCGGGGGGAc                                                                                                                       >  1:8741838/1‑140 (MQ=38)

                         aaCTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAAACCAATCCCCAAAGGGGAGAGTGGACCGt                                                                                                                    >  2:9418669/1‑140 (MQ=39)

                         aaCTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCCCACCCCAACCCACACCCCAAAAGGGCGAGGGGGcccg                                                                                                                    >  1:918485/1‑138 (MQ=38)

                         aaCTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTACCCTCACCCTAAACCTCTCCCCCAAGGGGCGAGGGGACCGt                                                                                                                    >  2:8878895/1‑140 (MQ=255)

                          aCTCTTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCGAACCCTCTCCCCAAAGGGGCGAGGGGACCGtt                                                                                                                   <  1:4874353/140‑1 (MQ=255)

                          aCTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGGACCGtt                                                                                                                   <  1:7393489/140‑1 (MQ=255)

                          aCTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCACACCCTTACCCTCTCCCCAAAGGGGGGAGGGGACCggt                                                                                                                   >  2:8126628/1‑138 (MQ=255)

                          aCTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCACGTACGTTCCCCACACCCTAACCCTCTCCCCAAAGGGGCGAGGGGACCGtt                                                                                                                   <  2:1292571/140‑1 (MQ=255)

                           cTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCACACCCAAACCCGCTCCCCAAAGGGGCGAGGGGACCGGTc                                                                                                                  >  1:10518573/1‑140 (MQ=255)

                             aTTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCGCACCCAAACCCACTCCCCCAAGGGGCGAGGGGACCCTTCAg                                                                                                                >  2:6649329/1‑140 (MQ=39)

                               tGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCGCACCCAAAACCTCACCCCCAAGGGGCGCGGGGACCGGTCAgga                                                                                                              >  2:3409141/1‑138 (MQ=38)

                               tGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCACACCCTAACCCACACCCCAAAGGGGCGAGGGGACCGTTCAGTa                                                                                                              >  1:10767408/1‑140 (MQ=255)

                               tGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCACACCCAAACCCACACCCCCAAAGGGCGAGGGGACCCGTCAgga                                                                                                              >  2:8455425/1‑138 (MQ=37)

                               tGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTACCCACACCCTAACCCACACCCCAAACGGGCGGGGGGACCGTTAAGTa                                                                                                              >  2:5300065/1‑140 (MQ=38)

                               tGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGAACGTTCCCCAAACCCTAACCCTCACCCCCAAGGGGCGAGGGGACCGGTAAGTa                                                                                                              >  2:2268755/1‑140 (MQ=38)

                                gATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGGACCGGTCAGTAc                                                                                                             >  1:6258470/1‑140 (MQ=255)

                                gATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCACACCCAAACCCACTACCCAAAGGGGCGAGGGGACCGTTCAGTAc                                                                                                             >  1:10929132/1‑140 (MQ=255)

                                gATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCACACCCAAAACCTCTCCCCAAAGGGGCGAGGGGGCCGTTCAGTAc                                                                                                             >  1:9628536/1‑140 (MQ=255)

                                gATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGGTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGGACCGTTCAGTAc                                                                                                             >  2:7507954/1‑140 (MQ=255)

                                gATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGGTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGGACCGTTCAGTAc                                                                                                             <  2:10185146/140‑1 (MQ=255)

                                gATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAAGTTTACATCCCGTACGTTCCCCGCACCCAAACCCGCTCCCCAAAGGGGCGAGGGGACCGTTCAGTaa                                                                                                             >  2:89598/1‑139 (MQ=255)

                                   aataaAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCACACCCAAACCCACAACCCCAAAGGGCGCGGGGACCCGTCAGTAAGGa                                                                                                          >  2:1035308/1‑140 (MQ=37)

                                     taaAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCACACCCAAACCCACACCCCAAAGGGGCGAGGGGACCGGTCAGTACGGAAt                                                                                                        >  1:2710349/1‑140 (MQ=39)

                                      aaaaGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCGAACCCTCTACCCAAAGGGGCGAGGGGACCGTTCAGTACGGaaat                                                                                                       >  1:8067789/1‑138 (MQ=255)

                                        aaGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTa                                                                                                     >  2:3764864/1‑140 (MQ=255)

                                          gACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGc                                                                                                   <  2:1408155/140‑1 (MQ=255)

                                            cATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCtt                                                                                                 <  1:1748247/140‑1 (MQ=255)

                                             aTTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTACCCACAACCTAACCCACAACCCCAAGGGGCGGGGGGACCGTTCAGTACGGCAATTAGCttt                                                                                                >  2:32333/1‑139 (MQ=37)

                                              ttAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACCTCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGa                                                                                               <  2:9249489/140‑1 (MQ=255)

                                              ttAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCACAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGa                                                                                               <  1:2115940/140‑1 (MQ=255)

                                              ttAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGa                                                                                               <  1:6443951/140‑1 (MQ=255)

                                              ttAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGa                                                                                               <  1:9937687/140‑1 (MQ=255)

                                              atAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGGTCCCCTCACCCTAACCCTCTCCCCAACGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGa                                                                                               <  2:5696740/139‑1 (MQ=255)

                                               tAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTACCCTCCCCCTAACCCACACCCCAAAGGGGCGCGGGGACCGTTCAGTACGGAATTTAGCTTGaa                                                                                              >  2:4534959/1‑139 (MQ=38)

                                                aaCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCACACCCTAACCCACTCCCCAAAGGGGCGAGGGGCCCGTTCCGTACGGAATTTAGCTTGACg                                                                                             >  1:8025630/1‑140 (MQ=255)

                                                   cGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTg                                                                                          <  1:8455425/140‑1 (MQ=255)

                                                     tAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGGTCCCCACCCCCTAACCCTCTCCCCAAAGTGGCGAGGGGCACGTTCAGTACGGACATTAGCTTGACGGTGcg                                                                                        >  2:2602446/1‑139 (MQ=38)

                                                       ggCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTGCCCACACCCGAACCCTATCACCAAATGGGCGAGGGGTCCGGTGAGGACGGAATTTTGCTTTACGGTGCTAt                                                                                      >  1:5987536/1‑140 (MQ=37)

                                                       ggCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGGTTCCCACACCCCAAACCACACCCCAAACGGGCGCGGGGCCCGGTACGTACAGCAATTATCGTGACggggggat                                                                                      >  1:4100605/1‑134 (MQ=19)

                                                        gCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCaa                                                                                                                                     <  1:5463920/92‑1 (MQ=255)

                                                        gCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATc                                                                                     <  2:5502373/140‑1 (MQ=255)

                                                        gCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATc                                                                                     <  2:4970405/140‑1 (MQ=255)

                                                          cGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCa                                                                                   <  1:3869183/140‑1 (MQ=255)

                                                          cGGATAAGAGGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACCGCCCGTACGTTCCCCTCCCCCTACCCCTCTCCCCACAGGGGCGAGGGGACCGTTCAGTACGGAATTGCGCTTGACGGTGCTATCCa                                                                                   <  2:10546684/140‑1 (MQ=255)

                                                            gATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCct                                                                                                                                             <  2:4308087/80‑1 (MQ=255)

                                                            gATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTGGCCCACACCCAAACCCCCACCCCCAAGGGGGGGGGGGGCCCTGCAGTACCGCAGTTAGCTTTGCGGTGGGATACAGc                                                                                 >  1:5734326/1‑140 (MQ=255)

                                                             aTAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCa                                                                                <  1:2343740/140‑1 (MQ=255)

                                                             aTAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCAACCAAACCCACTACCCAAAGGGGCGAGGGGACCGTTCATTACGGAATTTATCATTAAGGTTCTATACAGCa                                                                                >  2:5276990/1‑140 (MQ=255)

                                                             aTAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCCCACCCGAACCCTCTCCCCAAAGGGGCGAGGGGACCGGTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCa                                                                                >  1:7257332/1‑140 (MQ=255)

                                                             aTAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCACACCCAAACCCTCAACCCAAAGGGGCGGGGGGACCGGTCAGTAAGGAATTTATCTTTAAGGTGCTATCCAGCa                                                                                >  1:10374254/1‑140 (MQ=255)

                                                             aTAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCACACCCAAACCCACACCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAAATTAGCTTGACGGTGCTATACAGCa                                                                                >  1:6634009/1‑140 (MQ=38)

                                                             aTAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCACACCCAAAAACACAACCCAAACGGGCGAGGGGACCGTTCAGTAAGGAAATTATCTTTTCAGTGATATACAGCa                                                                                >  1:1672139/1‑140 (MQ=255)

                                                             aTAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCACCACAACCCAACCCACACCCCAAAGGGGCGAGGGGGACGGTAAGTACCGAAAGTAGCTTGTAGGGGGTATCCCGcc                                                                                >  1:10214696/1‑139 (MQ=255)

                                                              tAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCAt                                                                               <  1:8214789/140‑1 (MQ=255)

                                                                  aTGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGa                                                                                                                             >  2:10838886/1‑90 (MQ=255)

                                                                  aTGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCAAACCCTCTCCCCAAAGGGGCGAGGGGACCGTTCAGTAAGGAATTTATCTTTACGGTGCTATACAGCATTaaa                                                                           >  2:6099076/1‑140 (MQ=38)

                                                                    gcgcCAGCATCGCATCCGGCGATGCTGGCGCGATGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATa                                                                         <  1:7027349/140‑1 (MQ=255)

                                                                      gcCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGGTCCCCTCCCCCTAACCCTCTCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACt                                                                       <  1:5640843/140‑1 (MQ=255)

                                                                       ccAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCACACCCAAACCCACACACCCAAGGGGCGAGGGGACCCTTCAGTTCGGAAATTATAATGACGGGGCGATACACCAATAAATAATg                                                                      >  2:3018280/1‑140 (MQ=255)

                                                                             tcgcatcCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATa                                                                <  1:3764864/140‑1 (MQ=255)

                                                                             tcgcatcCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATa                                                                <  1:4287694/140‑1 (MQ=255)

                                                                                         aTGCTGGCGCGTTGAATTTTACATCCCGTACGTTGCCCTCACCCGAACCCGCACCCCAAATGGGCGGGGGGGCCGGGGAGTACGGAATTTAGCTTGTCGGTGGTCTCCAGCATTAAAAAATGGGCATACTCACACGCaaa                                                    >  1:10843194/1‑140 (MQ=255)

                                                                                         aTGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCaaa                                                    <  1:10346158/140‑1 (MQ=255)

                                                                                               gcgcGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCACTCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCgc                                              <  1:7689737/140‑1 (MQ=255)

                                                                                               gcgcGTTGAATTTTACATCCCGTACGTTCCCCACACCCTAACCCACTCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTATCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAAACCgc                                              >  2:6303697/1‑140 (MQ=255)

                                                                                                    ttGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCAc                                         <  2:2835803/140‑1 (MQ=255)

                                                                                                    ttGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCAc                                         <  2:713676/140‑1 (MQ=255)

                                                                                                    ttGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCAc                                         <  1:9020276/140‑1 (MQ=255)

                                                                                                     tGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCACAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATCCTCTCACGCAAAATCCGCAGCAcc                                        <  2:2142564/140‑1 (MQ=255)

                                                                                                      gAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCg                                       <  2:3832656/140‑1 (MQ=255)

                                                                                                                     tACGTTCCCCACAACCTAACCCTCTCCCCAAATGGGCGAGGGGCCCGTTCAGTAGGGAATTTTGCTTGTCGGTGCATTCCTGCTTTAAATTCTGGGAATACTCTCACGCAAAATGCGCAGCACCGGCTCTTAACGGCTGc                        >  2:1737181/1‑140 (MQ=255)

                                                                                                                        gTTCCCCTCACCCTAACCCTCTCCCCAACGGGGCGAGGGGACCGTTCAGGACGGAAGTGCGCTTGACGTTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCGTCACCGCTGCGAt                     <  2:764771/140‑1 (MQ=38)

                                                                                                                         ttacccTCAACCAAACCCTCAACCCAAAGGGGCGAGGGGACCGTTGAGTATGGAATGTAGCGTGAAGGTGCTATCCAGCATTATATACAGGCGATACTATAACGCAAAAACCTCAGCCCATTCACTTAAACGCAGCGagt                    >  2:9184494/4‑138 (MQ=255)

                                                                                                                         gtCCCCTCACCCTACCCCTCTCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGAtt                    <  1:3064175/139‑1 (MQ=255)

                                                                                                                          tCCCCACACCCAAAACCTCTACCCAAACGGGCGAGGGGACCCTTCAGTACGGAATTTAGCATGACGGTTCAAAACAGCAATAAATAAAGGAAATAAACTAACGCAAAATACGCAGCACCGACACATCACCCCTTCGAATc                   >  2:8373306/1‑140 (MQ=255)

                                                                                                                            cccTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCgg                 >  2:6483602/1‑140 (MQ=255)

                                                                                                                             ccTCACCCTAACCCTCTCCCCCACGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCggg                <  1:10477788/140‑1 (MQ=255)

                                                                                                                               tCACCCTAACCCACTACCCAAATGGGCGAGGGGAACGTTAAGTAAGGAATTTAGCTTTACGGTGCTATCCAGCATTAAATAATGGCAATACTCTCAAGCAAAATACGCAGCACCGTCTCATCACCGCATCGATTAGGGtt              >  2:1449069/1‑140 (MQ=255)

                                                                                                                                     gaaCCCTCTCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCg        <  1:1535880/139‑1 (MQ=255)

                                                                                                                                      aaCCCTCTCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGa       >  2:463519/1‑140 (MQ=255)

                                                                                                                                      aaCCCTCTCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGa       >  1:2450458/1‑140 (MQ=255)

                                                                                                                                      aaCCCTCTCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCAATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGa       >  1:7523171/1‑140 (MQ=255)

                                                                                                                                       aCCCTCTCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGaa      <  2:9636992/140‑1 (MQ=255)

                                                                                                                                       aCCCTCTCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGaa      <  2:9891395/140‑1 (MQ=255)

                                                                                                                                       aCCCTCTCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGaa      <  1:4025693/140‑1 (MQ=255)

                                                                                                                                          ctctCCCCAACGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCCCGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATCg   <  1:8270024/140‑1 (MQ=255)

                                                                                                                                           tctcCCCCAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCGTCACCGCTGCGATTCGGGTGAATGCGAATCGc  >  2:7851892/1‑140 (MQ=255)

                                                                                                                                           tctcCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATCGc  >  2:1572429/1‑140 (MQ=255)

                                                                                                                                           tctcCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATCGc  >  1:10044400/1‑140 (MQ=255)

TCTGCCGCGCCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATCGC  >  NZ_CP025268/3505420‑3505698

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`