Predicted mutation
evidence seq id position mutation annotation gene description
RA NZ_CP025268 1,371,754 T→C *326* (TAA→TAG pspF ← phage shock protein operon transcriptional activator

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NZ_CP0252681,371,7540TC99.8% 2029.3 / NA 581*326* (TAA→TAGpspFphage shock protein operon transcriptional activator
Reads supporting (aligned to +/- strand):  ref base T (0/0);  major base C (340/240);  minor base G (1/0);  total (341/240)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 581 total aligned reads displayed.

TGCGCTGAGCGATTAATAGCCCAACGCAATAATGTCTGATGCGCTGCGCTTATCAGGCCTGCAAACGACGTATTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGTTAAATCTGGTGCTTTTTCAACAACGCGCGGAACTGATGATAAGTTAACCCCAGTAATTCAGCCGCGCGCTTCTGGTTATATTTCCCTTGTTGCAAACTGAGTTGCAGCAACTCTTTTTCCTGCTGCATCTGAAACT  >  NZ_CP025268/1371619‑1371890
                                                                                                                                       |                                                                                                                                        
tGCGCTGAGCGATTAATAGCCCAACGCAATAATGTCTGATGCGCTGCGCTTATCAGGCCTGCAAACGACGTATTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTaaa                                                                                                                                      >  1:6877828/1‑140 (MQ=255)
tGCGCTGAGCGATTAATAGCCCAACGCAATAATGTCTGATGCGCTGCGCTTATCAGGCCTGCAAACGACGTATTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTaaa                                                                                                                                      >  2:9116698/1‑140 (MQ=255)
      gAGCGATTAATAGCCCAACGCAATAATGTCTGATGCGCTGCGCTTATCAGGCCTGCAAACGACGTATTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGt                                                                                                                                <  1:9625135/140‑1 (MQ=255)
          gATTAATAGCCCAACGCAATAATGTCTGATGCGCTGCGCTTATCAGGCCTGCAAACGACGTATTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCtt                                                                                                                            >  1:3751950/1‑140 (MQ=255)
              aaTAGCCCAACGCAATAATGTCTGATGCGCTGCGCTTATCAGGCCTGCAAACGACGTATTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTc                                                                                                                        >  1:1319822/1‑140 (MQ=255)
                      aaCGCACTAATGTCTGATGCGCTGCGCTTATCAGGCCTGCAAACGACGTATTGATTATGTATGCCGAATAAAGCAGTCACGCCGCATCCGGCAAGTTGTATTGCTCATCTAAGCTAAATCTGGTGCTTTTTCAACAAcgc                                                                                                                >  2:9255993/1‑140 (MQ=255)
                      aaCGCAATAATGTCTGTTGCGCTGCGCTTATCAGGCCTGCAAACGACGTATTGATTATGTATGCCGAATACAGCCTTCACTCCGCATCCGGCAAGTTGTATTGATCTACTTCGCTCAATCTGGTGCTTGTTcaacgccgc                                                                                                                >  2:8012098/1‑135 (MQ=255)
                      aaCGCAATAATGTCTGATGCGCTGCGCTTATCAGGCCTGCAAACGACGTATTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAAcgc                                                                                                                >  1:8159040/1‑140 (MQ=255)
                      aaCGCAATAATGTCTGATGCGCTGCGCTTATCAGGCCTGCAAACGACGTATTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAAcgc                                                                                                                >  2:1648580/1‑140 (MQ=255)
                       aCGCAATAATGTCTGATGCGCTGCGCTTATCAGGCCTGCAAACGACGTATTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAAcgcg                                                                                                               <  1:1051985/140‑1 (MQ=255)
                       aCGCAATAATGTCTGATGCGCTGCGCTTATCAGGCCTGCAAACGACGTATTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAAcgcg                                                                                                               <  2:605628/140‑1 (MQ=255)
                       aCGCAATAATGACTGATGCGCTGCGCTTATCAGGCCTGCAAACGACGTAGTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAAcgcg                                                                                                               <  1:5072416/140‑1 (MQ=255)
                         gCAATAATGTCTGATGCGCTGCGCTTATCAGGCCTGCAAACGACGTATTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAAcgcgcg                                                                                                             >  1:4091830/1‑140 (MQ=255)
                         gCAATAATGTCTGATGCGCTGCGCTTATCAGGCCTGCAAACGACGTATTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAAcgcgcg                                                                                                             <  1:2477837/140‑1 (MQ=255)
                         gCAATAATGTCGGATGCGCTGCGCTTATCAGGCCTGCAAACGACGTATTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAAcgcgcg                                                                                                             <  2:6463995/140‑1 (MQ=255)
                            ataatGTCTGATGCGCTGCGCTTATCAGGCCTGCAAACGACGTATTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGaa                                                                                                          <  1:10114396/140‑1 (MQ=255)
                            ataatGTCTGATGCGCTGCGCTTATCAGGCCTGCAAACGACGTATTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGaa                                                                                                          <  1:10275047/140‑1 (MQ=255)
                            ataatGTCTGATGCGCTGCGCTTATCAGGCCTGCAAACGACGTATTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTGTCAACAACGCGCGGaa                                                                                                          >  2:2861310/1‑140 (MQ=255)
                            ataagGTCTGATGCGCTGCGCTTATCAGGCCTGCAAACGACGTATTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGaa                                                                                                          <  1:4313785/140‑1 (MQ=255)
                             taatGTCTGATGCGCTGCGCTTATCAGGCCTGCAAACGACGTATTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAAc                                                                                                         >  1:317698/1‑140 (MQ=255)
                               atGTCTGATGCGCTGCGCTTATCAGGCCTGCAAACGACGTATTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACtg                                                                                                       >  1:8812234/1‑140 (MQ=255)
                                  tCTGATGCGCTGCGCTTCTCAGGCCTGCAAACGACGTATTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACtgatg                                                                                                    >  1:618451/1‑140 (MQ=255)
                                  tCTGATGCGCTGCGCTTATCAGGCCTGCAAACGACGTATTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACtgatg                                                                                                    >  2:2197614/1‑140 (MQ=255)
                                  tCTGATGCGCTGCGCTTATCAGGCCTGCAAACGACGTATTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACtgatg                                                                                                    >  2:4084549/1‑140 (MQ=255)
                                  tCTGATGCGCTGCGCTTATCAGGCCTGCAAACGACGTATTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACtgatg                                                                                                    >  1:771530/1‑140 (MQ=255)
                                  tCTGATGCGCTGCGCTTATCAGGCCTGCAAACGACGTATTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACtgatg                                                                                                    >  1:6500418/1‑140 (MQ=255)
                                  tCTGATGCGCTGCGCTTATCAGGCCTGCAAACGACGTATTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACtgatg                                                                                                    >  2:3685090/1‑140 (MQ=255)
                                  tCTGATGCGCTGCGCTTATCAGGCCTGCAAACGACGTATTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACtgatg                                                                                                    <  1:222931/140‑1 (MQ=255)
                                  tCTGATGCGCTGCGCTTATCAGGCCTGCAAACGACGTATTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACtgatg                                                                                                    >  2:8609322/1‑140 (MQ=255)
                                   cTGATGCGCTGCGCTTATCAGGCCTGCAAACGACGTATTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACtgatga                                                                                                   <  1:5281642/140‑1 (MQ=255)
                                   cTGATGCGCTGCGCTTATCAGGCCTGCAAACGACGTATTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACtgatga                                                                                                   >  2:4816010/1‑140 (MQ=255)
                                   cTGATGCGCTGCGATTATCAGGCCTGCAAACGACGTATTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACtgatga                                                                                                   <  2:1132852/140‑1 (MQ=255)
                                    tGATGCGCTGCGCTTATCAGGCCTGCAAACGACGTATTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACTgatgat                                                                                                  <  2:5675186/140‑1 (MQ=255)
                                    tGATGCGCTGCGCTTATCAGGCCTGCAAACGACGTATTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTNTTTCAACAACGCGCGGAACTgatgat                                                                                                  >  1:6665599/1‑140 (MQ=255)
                                     gATGCGCTGCGCTTATCAGGCCTGCAAACGACGTATTGATTATGTATGCCGAAAAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTGCGCTAAAGATGGTGCTTTTTCAACAACGCGCGGAACTGATGATa                                                                                                 >  1:9210948/1‑140 (MQ=255)
                                       tgcgctgcgcTTATCAGGCCTGCAAACGACGTATTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACTGATGATAAg                                                                                               >  2:4508770/1‑140 (MQ=255)
                                       tgcgctgcgcTTATCAGGCCTGCAAACGACGTATTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACTGATGATAAg                                                                                               >  1:7106578/1‑140 (MQ=255)
                                          gctgcgctTATCAGGCCTGCAAACGACGTATTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACTGATGATAAGTTa                                                                                            <  1:7341959/140‑1 (MQ=255)
                                          gctgcgctTATCAGGCCTGCAAACGACGTATTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACTGATGATAAGTTa                                                                                            <  1:4677254/140‑1 (MQ=255)
                                            tgcgctTATCAGGCCTGCAAACGACGTATTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACTGATGATAAGTTAAc                                                                                          <  2:8337468/140‑1 (MQ=255)
                                            tgcgctTATCAGGCCTGCAAACGACGTATTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACTGATGATAAGTTAAc                                                                                          <  1:4534844/140‑1 (MQ=255)
                                            tgcgctTATCAGGCCTGCAAACGACGTATTGATTATGTATGCAGAATAAAGCATTCACGCCGCATCCGGCATGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACTGATGATAAGTTAAc                                                                                          <  2:3876954/140‑1 (MQ=255)
                                            tgcgctTATCAGGCCTGCAAACGACGTAGTGATTATGTATGCCGACTAAAGCAGTCACGCCGCATCCGGCAAGTTGTATTGCTCACCTTCGCTAATTCTGGTGCTTTGTCAACAACGCGCGGAACTGTTGTTAAGTTAAc                                                                                          >  2:6982506/1‑140 (MQ=255)
                                            tgcgctTATCAGGCCTGAAAACGACGTATTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGTCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACTGATGATAAGTTAAc                                                                                          >  2:1321457/1‑140 (MQ=255)
                                                    tCAGGCCTGCAAACGACGTATTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACTGATGATAAGTTAACCCCAGTaa                                                                                  >  1:3040454/1‑140 (MQ=255)
                                                        gCCTGCAAACGACGTATTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACTGATGATAAGTTAACCCCAGTAATTCa                                                                              >  1:4824024/1‑140 (MQ=255)
                                                        gCCTGCAAACGACGTATTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACTGATGAGAAGTTAACCCCAGTAATTCa                                                                              >  1:1212569/1‑140 (MQ=255)
                                                           tGCAAACGACGTATTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTACGCTAAATCTGTTGCTTTTTCAACAACGCGCGGACCTGATGATAAGATAACCCCAGTAATTCAGcc                                                                           >  2:8742107/1‑140 (MQ=255)
                                                             cAAACGACGTATTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACTGATGATACGTTAACCCCAGTAATTCAGCcgc                                                                         >  1:1946877/1‑140 (MQ=255)
                                                             cAAACGACGTATTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACTGATGATAAGTTAACCCCAGTAATTCAGCcgc                                                                         >  2:8127441/1‑140 (MQ=255)
                                                              aaaCGACGTATTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACTGATGATAAGTTAACCCCAGTAATTCAGCcgcg                                                                        <  2:432146/140‑1 (MQ=255)
                                                              aaaCGACGTATTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACTGATGATAAGTTAACCCCAGTAATTCAGCcgcg                                                                        <  2:2943010/140‑1 (MQ=255)
                                                                  gacgTATTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCACGTTGTATTGCTCAACTTCGCTACATCGGGTGCTGTTTCAACAACGCGCGGCACTGATGATCAGTTAACCCCAGTAATTCAGCCGCGCGCt                                                                    >  2:2027443/1‑140 (MQ=255)
                                                                  gacgTATTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACTGATGATAAGTTAACCCCAGTAATTCAGCCGCGCGCt                                                                    <  1:8737885/140‑1 (MQ=255)
                                                                  gacgTATTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACTGATGATAAGTTAACCCCAGTAATTCAGCCGCGCGCt                                                                    >  1:5529229/1‑140 (MQ=255)
                                                                   acgTATTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACTGATGATAAGTTAACCCCAGTAATTCAGCCGCGCGCtt                                                                   <  2:508245/140‑1 (MQ=255)
                                                                   acctcttGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTAGTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACTGATGATAAGTTAACCCCAGTAATTCAGCCGCGCGCtt                                                                   <  1:9883333/135‑1 (MQ=255)
                                                                   acctATTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACTGATGATAAGTTAACCCCAGTAATTCAGCCGCGCGCtt                                                                   <  2:8438257/137‑1 (MQ=255)
                                                                       aTTGATTATGTATGCCGAATACAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACTGATGATAAGTTAACCCCAGTAATTCAGCCGCGCGCTTCTgg                                                               <  1:10035769/140‑1 (MQ=255)
                                                                       aTTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGACCTGATGATAAGTTAACCCCAGTAATTCAGCCGCGCGCTTCTgg                                                               >  2:7449169/1‑140 (MQ=255)
                                                                       aTTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACTGATGATAAGTTAACCCCAGTAATTCAGCCGCGCGCTTCTgg                                                               <  1:5706568/140‑1 (MQ=255)
                                                                       aTTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACTGATGATAAGTTAACCCCAGTAATTCAGCCGCGCGCTTCTgg                                                               <  1:1464165/140‑1 (MQ=255)
                                                                        ttGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACTGATGATAAGTTAACCCCAGTAATTCAGCCGCGCGCTTCTGGt                                                              <  2:7656666/140‑1 (MQ=255)
                                                                              atgtatgCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACTGATGATAAGTTAACCCCAGTAATTCAGCCGCGCGCTTCTGGTTATAtt                                                        >  2:1273659/1‑140 (MQ=255)
                                                                                  atgCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACTGATGATAAGTTAACCCCAGTAATTCAGCCGCGCGCTTCTGGTTATATTTccc                                                    >  2:9620108/1‑140 (MQ=255)
                                                                                  atgCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACTGATGATAAGTTAACCCCAGTAATTCAGCCGCGCGCTTCTGGTTATATTTccc                                                    <  1:9285097/140‑1 (MQ=255)
                                                                                   tgCCGAATAAAGCATTCACGCTGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACTGATGATAAGTTAACCCCAGTAATTCAGCCGCGCGCTTCTGGTTATATTTCCCt                                                   >  2:9808880/1‑140 (MQ=255)
                                                                                   tgCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACTGATGATAAGTTAACCCCAGTCATTCAGCCGCGCGCTTCTGGTTATATTTCCCt                                                   >  2:10714098/1‑140 (MQ=255)
                                                                                   tgCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACTGATGATAAGTTAACCCCAGTAATTCAGCCGCGCGCTTCTGGTTATATTTCCCt                                                   >  2:2607575/1‑140 (MQ=255)
                                                                                   tgCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACTGATGATAAGTTAACCCCAGTAATTCAGCCGCGCGCTTCTGGTTATATTTCCCt                                                   >  2:6714376/1‑140 (MQ=255)
                                                                                   tgCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACTGATGATAAGTTAACCCCAGTAATTCAGCCGCGCGCTTCTGGTTATATTTCCCt                                                   >  2:10643993/1‑140 (MQ=255)
                                                                                     ccGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACTGATGATAAGTTACCCCCAGTAATTCAGCCGCGCGCTTCTGGTTTTATTTCCCttg                                                 >  2:8983156/1‑140 (MQ=255)
                                                                                     ccGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACTGATGATAAGTTAACCCCAGTAATTCAGCCGCGCGCTTCTGGTTATATTTCCCttg                                                 >  1:8632963/1‑140 (MQ=255)
                                                                                     ccGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACTGATGATAAGTTAACCCCAGTAATTCAGCCGCGCGCTTCTGGTTATATTTCCCttg                                                 >  1:2626843/1‑140 (MQ=255)
                                                                                          tAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACTGATGATAAGTTAACCCCAGTAATTCAGCCGCGCGCTTCTGGTTATATTTCCCTTGTTGCa                                            <  1:10788129/140‑1 (MQ=255)
                                                                                          tAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACTGATGATAAGTTAACCCCAGTAATTCAGCCGCGCGCTTCTGGTTATATTTCCCTTGTTGCa                                            <  1:3983117/140‑1 (MQ=255)
                                                                                            aaGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACTGATGATAAGTTAACCCCAGTAATTCAGCCGCGCGCTTCTGGTTATATTTCCCTTGTTGCaaa                                          <  2:7354225/140‑1 (MQ=255)
                                                                                            aaGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACTGATGATAAGTTAACCCCAGTAATTCAGCCGCGCGCTTCTGGTTATATTTCCCTTGTTGCaaa                                          <  1:283146/140‑1 (MQ=255)
                                                                                             aGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGACCTGATGATAAGTTAAACCCAGTAATTCAGCCGCGCGCTTCTGGTTATATGTCCCTTGTTGCAAAc                                         >  2:2348441/1‑140 (MQ=255)
                                                                                                  tCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACTGATGATAAGTTAACCCCAGTAATTCAGCCGCGCGCTTCTGGTTATATTTCCCTTGTTGCAAACTGAGt                                    >  2:9446217/1‑140 (MQ=255)
                                                                                                  tCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACTGATGATAAGTTAACCCCAGTAATTCAGCCGCGCGCTTCTGGTTATATTTCCCTTGTTGCAAACTGAGt                                    >  1:1781823/1‑140 (MQ=255)
                                                                                                  tCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACTGATGATAAGTTAACCCCAGTAATTCAGCCGCGCGCTTCTGGTTATATTTCCCTTGTTGCAAACTGAGt                                    >  1:8008556/1‑140 (MQ=255)
                                                                                                  tCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACTGATGATAAGTTAACCCCAGTAATTCAGCCGCGCGCTTCTGGTTATATTTCCCTTGTTGCAAACTGAGt                                    >  2:308896/1‑140 (MQ=255)
                                                                                                         gcATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACTGATGATAAGTTAACCCCAGTAATTCAGCCGCGCGCTTCTGGTTATATTTCCCTTGTTGCaaa                                          >  2:7124187/1‑127 (MQ=255)
                                                                                                         gcATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACTGATGATAAGTTAACCCCAGTAATTCAGCCGCGCGCTTCTGGTTATATTTCCCTTGTTGCAAACTGAGTTgcagca                             <  2:6877828/140‑1 (MQ=255)
                                                                                                         gcATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACTGATGATAAGTTAACCCCAGTAATTCAGCCGCGCGCTTCTGGTTATATTTCCCTTGTTGCAAACTGAGTTgcagca                             <  1:9482566/140‑1 (MQ=255)
                                                                                                         gcATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACTGATGATAAGTTAACCCCAGTAATTCAGCCGCGCGCTTCTGGTTATATTTCCCTTGTTGCAAACTGAGTTgcagca                             >  1:364802/1‑140 (MQ=255)
                                                                                                          cATCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACTGATGATAAGTTAACCCCAGTAATTCAGCCGCGCGCTTCTGGTTATATTTCCCTTGTTGCAAACTGAGTTGCAGCaa                            >  1:8413389/1‑140 (MQ=255)
                                                                                                           aTCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTGTTTCAACAACGCGCGGAACTGAGGATAAGTTAACCACAGTAAGTCAGCCGCGCGCTGCTGGTTATATTTCCCTTGTTGCAAACTGAGTTGCAGCAAc                           >  2:6256080/1‑140 (MQ=255)
                                                                                                            tCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACTGATGATAAGTTAACCCCAGTAATTCAGCCGCGCGCTTCTGGTTATATTTCCCTTGTTGCAAACTGAGTTGCAGCAAct                          <  2:3574200/140‑1 (MQ=255)
                                                                                                            tCCGGCAAGTTGTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACTGATGATAAGTTAACCCCAGTAATTCAGCCGCGCGCTTCTGGTTATATTTCCCTTGTTGCAAACTGAGTTGCAGCAAct                          <  2:10134263/140‑1 (MQ=255)
                                                                                                                       gTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACTGATGATAAGTTAACCCCAGTAATTCAGCCGCGCGCTTCTGGTTATATTTCCCTTGTTGCAGACTGAGTTGCAGCAACTCTTTTTCctgc               >  1:7836420/1‑140 (MQ=255)
                                                                                                                       gTATTGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACTGATGATAAGTTAACCCCAGTAATTCAGCCGCGCGCTTCTGGTTATATTTCCCTTGTTGCAAACTGAGTTGCAGCAACTCTTTTTCctgc               <  1:2947703/140‑1 (MQ=255)
                                                                                                                        tcttGCTCAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACTGATGATAAGTTACCCCCAGTAATTCAGCCGCGCGCTTCTGGTTATATTTCCCTTGTTGCAAACTGAGTTGCAGCAACTCTTTTTCctgct              <  2:1716135/138‑1 (MQ=255)
                                                                                                                         aTTGCTCAACGTCGCGAAATCTGGTGCCTTTTCAACAACGCGCGGAACTGAAGATAAGTTAACCCCAGTAATTCAGCCGCGCGCATCTGGTTATATTTCCCTTGTTGCAAACTGAGTTGCAGCAACTCTTTTTCctgcag             <  2:9204493/140‑3 (MQ=255)
                                                                                                                               cAACTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACTGATGATAAGTTAACACCAGTAATTCAGACGCGCGCTTCTGGTTATATTTCCCTTGTTGCAAACTGAGTTGCAGCAACTCTTTTTCCTGCTGCATCTg       >  2:3281188/1‑140 (MQ=255)
                                                                                                                                  cTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACTGATGATAAGTTAACCCCAGTAATTCAGCCGCGCGCTTCTGGTTATATTTCCCTTGTTGCAAACTGAGTTGCAGCAACTCTTTTTCCTGCTGCATCTGaaa    <  1:8517498/140‑1 (MQ=255)
                                                                                                                                  cTTCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACTGATGATAAGTTAACCCCAGTAATTCAGCCGCGCGCTTCTGGTTATATTTCCCTTGTTGCAAACTGAGTTGCAGCAACTCTTTTTCCTGCTGCATCTGaaa    <  2:10512687/140‑1 (MQ=255)
                                                                                                                                   ttCGCTAAATCTGGTGCTTTTTCAACAACGCGCGGAACTGATGATAAGTTAACCCCAGTAATTCAGCCGCGCGCTTCTGGTTATATTTCCCTTGTTGCAAACTGAGTTGCAGCAACTCTTTTTCCTGCTGCATCTGAAAc   <  1:9072204/140‑1 (MQ=255)
                                                                                                                                    tCGCTAACTCTGGTGCTTTTTCAACAACGCGCGGAACTGATGATAAGTTAACCCCAGTAATTCAGCCGCGCGCTTCTGGTTATATTTCCCTTGTTGCAAACTGAGTTGCAGCAACTCTTTTTCCTGCTGCATCTGAAACt  <  2:5300486/140‑1 (MQ=255)
                                                                                                                                       |                                                                                                                                        
TGCGCTGAGCGATTAATAGCCCAACGCAATAATGTCTGATGCGCTGCGCTTATCAGGCCTGCAAACGACGTATTGATTATGTATGCCGAATAAAGCATTCACGCCGCATCCGGCAAGTTGTATTGCTCAACTTCGTTAAATCTGGTGCTTTTTCAACAACGCGCGGAACTGATGATAAGTTAACCCCAGTAATTCAGCCGCGCGCTTCTGGTTATATTTCCCTTGTTGCAAACTGAGTTGCAGCAACTCTTTTTCCTGCTGCATCTGAAACT  >  NZ_CP025268/1371619‑1371890

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: