| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP025268 | 3,864,419 | T→C | pseudogene (1103/1613 nt) | CXP41_RS20140 ← | PTS sugar transporter subunit IIB |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP025268 | 3,864,419 | 0 | T | C | 99.8% | 2136.4 / NA | 613 | pseudogene (1103/1613 nt) | CXP41_RS20140 | PTS sugar transporter subunit IIB |
| Reads supporting (aligned to +/- strand): ref base T (0/0); major base C (293/319); minor base A (1/0); total (294/319) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.80e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 613 total aligned reads displayed.
GTGCACATGTTGAACTGCAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTCAATCAGACCTCCG‑CCAT‑‑GT‑‑TCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTC > NZ_CP025268/3864282‑3864549 | ctGCACATGTTGAACCGCAGCATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCCGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTa < 1:8511145/139‑1 (MQ=255) tGCACATGTTGAACTGCAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAg < 2:6394390/140‑1 (MQ=255) tGCACATGTTGAACTGCAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAg < 2:3670637/140‑1 (MQ=255) tGCACATGTTGAACAGCAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAg < 2:1749335/140‑1 (MQ=255) cacaTGTTGAACTGCCGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTGGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTc > 2:2120823/1‑140 (MQ=255) cacaTGTTGAACTGCAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTc < 1:6987927/140‑1 (MQ=255) aTGTTGAACTGCAGAATCAGTGTGCGGAAAACCACGAACTACAGCAGGGTAAAGCACAACCCAAGGGCGATTTGGGTCAGCATCCAATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAAt < 1:8202525/140‑1 (MQ=255) tGTTGAACTGCAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCAAAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATc < 2:2826203/140‑1 (MQ=255) gTTGAACTGCAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAANGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCa > 1:10136403/1‑140 (MQ=255) gAACTGCAGAATCAGTTTGCGGAAAACCACGAAGTACAGCCGGGTAAAGCACAACCCAATGGCGATTTTGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGAc < 2:2249413/140‑1 (MQ=255) gAACTGCAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGAc > 1:4938385/1‑140 (MQ=255) tGCAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTcc < 1:913104/140‑1 (MQ=255) gCAGAATCAGTGTNCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCNGTAAAACCTAGTCAATCAGACCTCCg > 1:5853009/1‑140 (MQ=255) cAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAATACCTAGTCAATCAGACCTCCG‑c > 2:4105755/1‑140 (MQ=255) tCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCACTGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCG‑cccatg < 2:9078169/140‑5 (MQ=255) tCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCG‑cccatg < 1:4265122/140‑5 (MQ=255) tCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCG‑cccatg < 2:7336429/140‑5 (MQ=255) tCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCG‑cccatg < 1:9318232/140‑5 (MQ=255) aGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATTGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑Gt‑‑t < 2:4406357/140‑1 (MQ=255) aGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑Gt‑‑t < 2:7048983/140‑1 (MQ=255) gtgCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑GT‑‑Tgcc > 1:3072989‑M1/1‑137 (MQ=255) gtgCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑GT‑‑Tgcc > 1:7071886‑M1/1‑137 (MQ=255) gtgCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑GT‑‑Tgcc > 2:6226409‑M1/1‑137 (MQ=255) gtgCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑GT‑‑Tgcc < 1:4387491‑M1/140‑4 (MQ=255) tgCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTGTTGCGGTAAAACCTAGTCCATCAGACCTCCGCCCAT‑‑GT‑‑Tgccc > 2:7224242‑M1/1‑136 (MQ=255) gCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑GT‑‑Tgccca < 1:1785591‑M1/140‑6 (MQ=255) gCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑GT‑‑Tgccca < 2:6779078‑M1/140‑6 (MQ=255) cGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAATCCTAGGCAATCAGACCTCCGCCCAT‑‑GT‑‑Tgcccac > 1:3347054‑M1/1‑134 (MQ=255) cGGAAAACCACGAAGGACAGCAGGGTACAGCACAACCCAATGGCGATTTGGGTCAGCAGCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑GT‑‑Tgcccac > 2:644511‑M1/1‑134 (MQ=255) ggAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑GT‑‑Tgcccacc < 2:5103515‑M1/140‑8 (MQ=255) aaCCACGAAGTACAGCAGGGTAACGCACAACCCAAGGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑GT‑‑Tgcccaccacac < 2:4560994‑M1/140‑12 (MQ=255) aCCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑GT‑‑Tgcccaccacacc > 2:10487388‑M1/1‑128 (MQ=255) ccACGAAGTACCGCAGGGTAAAGCACAACCCAATGGCGATGTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑GT‑‑Tgcccaccacacca < 2:9813321‑M1/140‑14 (MQ=255) ccACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑GT‑‑Tgcccaccacacca < 2:7781767‑M1/140‑14 (MQ=255) aCGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑GT‑‑Tgcccaccacaccaaa < 1:675720‑M1/140‑16 (MQ=255) cGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGATGTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑GT‑‑Tgcccaccacacccaag > 2:7999930‑M1/1‑124 (MQ=255) cagcagGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑GT‑‑Tgcccaccacaccaaagagataca < 1:5515958‑M1/140‑24 (MQ=255) cagcagGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑GT‑‑Tgcccaccacaccaaagagataca < 1:1445564‑M1/140‑24 (MQ=255) agcagGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑GT‑‑Tgcccaccacaccaaagagatacat > 2:1606219‑M1/1‑116 (MQ=255) gcagGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑GT‑‑Tgcccaccacaccaaagagatacatt < 1:9976139‑M1/140‑26 (MQ=255) gcagGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑GT‑‑Tgcccaccacaccaaagagatacatt < 2:4916132‑M1/140‑26 (MQ=255) gggTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑GT‑‑Tgcccaccacaccaaagagatacattacg > 2:4154007‑M1/1‑112 (MQ=255) ggTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑GT‑‑Tgcccaccacaccaaagagatacattacgg < 1:6404518‑M1/140‑30 (MQ=255) gTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑GT‑‑Tgcccaccacaccaaagagatacattacggt > 2:10144348‑M1/1‑110 (MQ=255) tAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTCAAACCTAGTCAATCAGACCTCCGCCCAT‑‑GT‑‑Tgcccaccacaccaaagagatacattacggtc > 2:3529506‑M1/1‑109 (MQ=255) tAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑GT‑‑Tgcccaccacaccaaagagatacattccggtc > 2:1944898‑M1/1‑109 (MQ=255) tAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑GT‑‑Tgcccaccacaccaaagagatacattacggtc > 1:2340391‑M1/1‑109 (MQ=255) tAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑GT‑‑Tgcccaccacaccaaagagatacattacggtc > 1:5188999‑M1/1‑109 (MQ=255) tAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑GT‑‑Tgcccaccacaccaaagagatacattacggtc < 1:10793060‑M1/140‑32 (MQ=255) tAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑GT‑‑Tgcccaccacaccaaagagatacattacggtc > 1:3581518‑M1/1‑109 (MQ=255) tAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑GT‑‑Tgcccaccacaccaaagagatacattacggtc > 1:10360160‑M1/1‑109 (MQ=255) tAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑GT‑‑Tgcccaccacaccaaagagatacattacggtc > 1:6160711‑M1/1‑109 (MQ=255) tAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑GT‑‑Tgcccaccacaccaaagagatacattacggtc > 2:2938670‑M1/1‑109 (MQ=255) tAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑GT‑‑Tgcccaccacaccaaagag < 1:6561838‑M1/127‑19 (MQ=255) aGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑GT‑‑Tgcccaccacaccaaagagatacattacggtcgac > 1:4703878‑M1/1‑106 (MQ=255) cacaACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAATCCTAGTCAATCAGACCTCCGCCCAT‑‑GT‑‑Tgcccaccacaccaaagagatacattacggtcgacat > 2:8498119‑M1/1‑104 (MQ=255) aaCACAATGGCGATTTGGGTCAGCCTCAAATCCGCGTGGTTGCTGAACATCGGGATCAAGTTTTGCGGTACACCCTAGTCAATCCGACCTCCG‑CCCTTGGTGCCCACCACACCAAAGAGAGACATTACGGTCGACATTgt > 2:310781/1‑139 (MQ=255) aCCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑GT‑‑Tgcccaccacaccaaagagatacattacggtcgacattgag < 2:2470060‑M1/140‑41 (MQ=255) aCCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑GT‑‑Tgcccaccacaccaaagagatacattacggtcgacattgag > 1:10046209‑M1/1‑100 (MQ=255) cccAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑GT‑‑Tgcccaccacaccaaagagatacattacggtcgacattgagg > 2:1197096‑M1/1‑99 (MQ=255) tGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑GT‑‑Tgcccaccacaccaaagagatacattacggtcgacattgaggccgcc > 1:4125281‑M1/1‑94 (MQ=255) tGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑GT‑‑Tgcccaccacaccaaagagatacattacggtcgacattgaggccgcc > 1:8112585‑M1/1‑94 (MQ=255) tGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑GT‑‑Tgcccaccacaccaaagagatacattacggtcgacattgaggccgcc > 1:2884430‑M1/1‑94 (MQ=255) cGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑GT‑‑Tgcccaccacaccaaagagatacattacggtcgacattgaggccgccagc < 2:1348538‑M1/140‑50 (MQ=255) cGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑GT‑‑Tgcccaccacaccaaagagatacattacggtcgacattgaggccgccagc < 2:10859289‑M1/140‑50 (MQ=255) cGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑GT‑‑Tgcccaccacaccaaagagatacattacggtcgacattgaggccgccagc < 1:1300422‑M1/140‑50 (MQ=255) cGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑GT‑‑Tgcccaccacaccaaagagatacattacggtcgacattgaggccgccagc < 1:8833523‑M1/140‑50 (MQ=255) gATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑GT‑‑Tgcccaccacaccaaagagatacattacggtcgacattgaggccgccagca < 1:2744266‑M1/140‑51 (MQ=255) aTTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑GT‑‑Tgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcac > 1:3645895‑M1/1‑89 (MQ=255) aTTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑GT‑‑Tgcccaccacaccaaagagatacattacggtcgacattgaggccgc > 1:402740‑M1/1‑89 (MQ=255) ttGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑GT‑‑Tgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacgg > 1:7941983‑M1/1‑87 (MQ=255) tGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑GT‑‑Tgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggc < 2:6870243‑M1/140‑55 (MQ=255) cAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑GT‑‑Tgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgta < 2:587765‑M1/140‑60 (MQ=255) tatCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑GT‑‑Ttaccaccacaccaaagagatacattacggtcgtcattgaggccgccagcacggcgtgtacagcaaac > 2:7656326‑M1/1‑73 (MQ=255) tatCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑GT‑‑Tgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcacac > 1:9545022‑M1/1‑73 (MQ=255) tatCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑GT‑‑Tgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgca > 1:4547985‑M1/1‑73 (MQ=255) cgcgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑GT‑‑Tgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagca < 1:7328585‑M1/140‑72 (MQ=255) cgcgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑GG‑‑Tgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagca < 2:6521203‑M1/140‑72 (MQ=255) gcgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑GT‑‑Tgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaa < 1:4815937‑M1/140‑73 (MQ=255) gcgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑GT‑‑Tgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaa > 1:5695511‑M1/1‑68 (MQ=255) gcgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑GT‑‑Tgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaa > 2:4784993‑M1/1‑68 (MQ=255) cgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑GT‑‑Tgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaac > 1:3815480‑M1/1‑67 (MQ=255) gTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑GT‑‑Tgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacg < 1:9730648‑M1/140‑75 (MQ=255) tGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑GT‑‑Tgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacgg > 1:7634281‑M1/1‑65 (MQ=255) ggTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑GT‑‑Tgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggt < 2:10654362‑M1/140‑77 (MQ=255) gTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑GT‑‑Tgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtg < 2:9319799‑M1/140‑78 (MQ=255) ttGCTGAACATCGGGATCCAGTGTGGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑GT‑‑Tgcccaccacaccaaagagatacattacggtcgacagtgaggccgccagcacggcgtgtaccgcaaacagcaacggtga > 2:3242912‑M1/1‑62 (MQ=255) tGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑GT‑‑Tgcccaccactccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaa < 2:559960‑M1/140‑80 (MQ=255) gCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑GT‑‑Tgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaa > 1:5272782‑M1/1‑60 (MQ=255) tGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑GT‑‑Tgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatg > 1:20254‑M1/1‑58 (MQ=255) aaaatctGGATCAAGTTTTGCTGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑GT‑‑Tgcccaccacaccaaagagatacattacgttcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaa < 2:8900996‑M1/137‑85 (MQ=255) aaCCTCGGGAACCAGTTTTGCGTTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑GT‑‑Tgcccaccacaccacagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgta < 2:8730019‑M1/140‑85 (MQ=255) aaCATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑GT‑‑Tgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaa < 1:5020232‑M1/140‑85 (MQ=255) tCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑GT‑‑Tgccccccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacagg > 1:1672781‑M1/1‑52 (MQ=255) cGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑GT‑‑Tgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacagga > 1:10584902‑M1/1‑51 (MQ=255) ggATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑GT‑‑Tgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaag < 2:8168070‑M1/140‑92 (MQ=255) ggATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑GT‑‑Tgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaag > 1:2177711‑M1/1‑49 (MQ=255) tGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑GT‑‑Tgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcacacagcaacggtgacatgaacaggacggtaaattccag > 2:3428472‑M1/1‑38 (MQ=255) cgttaaaACCTAGTCAATCAGACCTCCGCCCAT‑‑GT‑‑Tgcccaccacaccacagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcg < 2:9575572‑M1/137‑105 (MQ=255) ggTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑GT‑‑Tgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcgg < 2:5422575‑M1/140‑106 (MQ=255) | GTGCACATGTTGAACTGCAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTCAATCAGACCTCCG‑CCAT‑‑GT‑‑TCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTC > NZ_CP025268/3864282‑3864549 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |