BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NZ_CP025268	383,110	T→C	pseudogene (558/672 nt)	CXP41_RS01990 ←	PIG‑L family deacetylase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NZ_CP025268	383,110	0	T	C	99.8%	1650.2 / NA	482	pseudogene (558/672 nt)	CXP41_RS01990	PIG‑L family deacetylase
Reads supporting (aligned to +/- strand): ref base T (0/0); major base C (273/208); minor base A (0/1); total (273/209)
Fisher's exact test for biased strand distribution p-value = 4.34e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 482 total aligned reads displayed.

ATCCAGGTTTTCATGCAATTTGCTCAAAGAATCATTTTATGAATTACAAAGCCTTCACCCAGATCGCTATTGACCTGTTGTCCGCGAAATTGTGCAACTGCACGCAGGCGATCATGACGCATATAATCGCGTCGTTCTTAGCTTTTATGTTTTTTTAATGCAGCAAGTTTGACTGTGAAATATTCTTCTTTAACGGATTCAAAAACCTGAGGCATAAATGAAAGCCAGGTACTTGGGGTTTCGTAGCCGAGAATTTGCGGAATAGTTCGGCAGG  >  NZ_CP025268/382973‑383246

  ccAGGTTTTCATGCAATTTGCTCAAAGAATCATTTTATGAATTACAAAGCCTTCACCCAGATCGCTATTGACCTGTTGTCCGCGAAATTGTGCAACTGCACGCAGGCGATCATGACGCATATAATCGCGTCGTTCCTAGc                                                                                                                                      >  1:9959432/1‑140 (MQ=255)

  ccAGGTTTTCATGCAATTTGCTCAAAGAATCATTTTATGAATTACAAAGCCTTCACCCAGATCGCTATTGACCTGTTGTCCGCGAAATTGTGCAACTGCACGCAGGCGATCATGACGCATATAATCGCGTCGTTCCTAGc                                                                                                                                      >  1:4012141/1‑140 (MQ=255)

  ccAGGTTTTCATGCAATTTGCTCAAAGAATCATTTTATGAATTACAAAGCCTTCACCCAGATCGCTATTGACCTGTTGTCCGCGAAATTGTGCAACTGCACGCAGGCGAGCATGACGCATATAATCGCGTCGTTCCTAgg                                                                                                                                      >  2:6346168/1‑139 (MQ=255)

    aGGTTTTCATGCAATTTGCTCAAAGAATCATTTTATGAATTACAAAGCCTTCACCCAGATCGCTATTGACCTGTTGTCCGCGAAATTGTGCAACTGCACGCAGGCGATCATGACGCATATAATCGCGTCGTTCCTAGCtt                                                                                                                                    >  1:2871682/1‑140 (MQ=255)

      gTTTTCATGCAATTTGCTCAAAGAATCATTTTATGAATTACAAAGCCTTCACCCAGATCGCTATTGACCTGTTGTCCGCGAAATTGTGCAACTGCACGCAGGCGATCATGACGCATATAATCGCGTCGTTCCTAGCttgt                                                                                                                                  >  2:4883487/1‑138 (MQ=255)

        tttCATGCAATTTGCTCAAAGAATCATTTTATGAATTACAAAGCCTTCACCCAGATCGCTATTGACCTGTTGTCCGCGAAATTGTGCAACTGCACGCAGGCGATCATGACGCATATAATCGCGTCGTTCCTAGCTTTTAt                                                                                                                                >  1:904386/1‑140 (MQ=255)

         ttCATGCAATTTGCTCAAAGAATCATTTTATGAATTACAAAGCCTTCACCCAGATCGCTATTGACCGGTTGTCCGCGAAATTGTGCAACTGCACGCAGGCGATCATGACGCATATAATCGCGTCGTTCCTAGCGTTTATg                                                                                                                               >  2:2772840/1‑140 (MQ=255)

           cATGCAATTTGCTCAAAGAATCATTTTATGAATTACAAAGCCTTCACCCAGATCGCTATTGACCTGTTGTCCGCGAAATTGTGCAACTGCACGCAGGCGATCATGACGCATATAATCGCGTCGTTCCTAGCTTTTATGtt                                                                                                                             >  2:313336/1‑140 (MQ=255)

             tGCAATTTGCTCAAAGAATCATTTTATGAATTACAAAGCCTTCACCCAGATCGCTATTGACCTGTTGTCCGCGAAATTGTGCAACTGCACGCAGGCGATCATGACGCATATAATCGCGTCGTTCCTAGCTTTTATGtttt                                                                                                                           >  1:8002230/1‑140 (MQ=255)

                 aTTTGCTGAAAGATTCATTTTATGAATTACAATGCCTTCACCCAGATCGCTCTTGTCCTGTTGTGCGGGATATTGTGCAAGTGCTAGCAGGGGTTCTTGAGGCATAGAATCGCGTCGTTCCGAGGTTTTATGtttttttg                                                                                                                       >  2:7502081/1‑139 (MQ=255)

                  tttGCTCAAAGAATCATTTTATGAATTACAAAGCCTTCACCCAGATCGCTATTGACCTGTTGTCCGCGAAATTGTGCAACTGCACGCAGGCGATCATGACGCATATAATCGCGTCGTTCCTAGCTTTTATGTTTTTTTaa                                                                                                                      >  2:1319934/1‑140 (MQ=255)

                  tttGCTCAAAGAATCATTTTATGAATTACAAAGCCTTCACCCAGATCGCTATTGACCTGTTGTCCGCGAAATTGTGCAACTGCACGCAGGCGATCATGACGCATATAATCGCGTCGTTCCTAGCTTTTATGTTTTTTTaa                                                                                                                      >  1:2538869/1‑140 (MQ=255)

                    tGCTCAAAGAATCATTTTATGAATTACAAAGCCTTCACCCAGATCGCTATTGACCTGTTGTCCGCGAAATTGTGCAACTGCACGCAGGCGATCATGACGCATATAATCGCGTCGTTCCTAGCTTTTATGTTTTTTTAATg                                                                                                                    <  1:6872603/140‑1 (MQ=255)

                      cTCCAAGAAGCATTTTAAGAATTACAAAGCCTTCACCCAGATCGCTATTGACCTGTTGTCCGCGAAATTGTGCAACTGCACGCAGGCGATCATGACGCATATAATCGCGTCGTTCCTAGCTTTTATGTTTTTTTAATgca                                                                                                                  <  2:5697867/140‑1 (MQ=255)

                      cTCAAAGAATCATTTTATGAATTACAAAGCCTTCACCCAGATCGCTATTGACCTGTTGTCCGCGAAATTGTGCAACTGCACGCAGTCGATCATGACGCATATAATCGCGTCGTTCCTAGCTTTTATGTTTTTTTAATgca                                                                                                                  >  2:10822741/1‑140 (MQ=255)

                      cTCAAAGAATCATTTTATGAATTACAAAGCCTTCACCCAGATCGCTATTGACCTGTTGTCCGCGAAATTGTGCAACTGCACGCAGGCGATCATGACGCATATAATCGCGTCGTTCCTAGCTTTTATGTTTTTTTAATgca                                                                                                                  <  1:7248358/140‑1 (MQ=255)

                      cTCAAAGAATCATTTTATGAATTACAAAGCCTTCACCCAGATCGCTATTGACCTGTTGTCCGCGAAATTGTGCAACTGCACGCAGGCGATCATGACGCATATAATCGCGTCGTTCCTAGCTTTTATGTTTTTTTAATgca                                                                                                                  <  2:2998708/140‑1 (MQ=255)

                        cAAAGAATCATTTTATGAATTACAAAGCCTTCACCCAGATCGCTATTGACCTGTTGTCCGCGAAATTGTGCAACTGCACGCAGGCGATCATGACGCATATAATCGCGTCGTTCCTAGCTTTTATGTTTTTTTAATgcagc                                                                                                                <  1:6606281/140‑1 (MQ=255)

                        cAAAGAATCATTTTATGAATTACAAAGCCTTCACCCAGATCGCTATTGACCTGTTGTCCGCGAAATTGTGCAACTGCACGCAGGCGATCATGACGCATATAATCGCGTCGTTCCTAGCTTTTATGTTTTTTTAATgcagc                                                                                                                <  2:1569680/140‑1 (MQ=255)

                              aTCATTTTATGAATTACAAAGCCTTCACCCAGATCGCTATTGACCTGTTGTCCGCGAAATTGTGCAACTGCACGCAGGCGATCATGACGCATATAATCGCGTCGTTCCTAGCTTTTATGTTTTTTTAATGCAGCAAGttt                                                                                                          <  2:1181894/140‑1 (MQ=255)

                                cATTTTATGAATTACAAAGCCTTCACCCAGATCGCTATTGACCTGTTGTCCGCGAAATTGTGCAACTGCACGCAGGCGATCATGACGCATATAATCGCGTCGTTCCTAGCTTTTATGTTTTTTTAATGCAGCAAGTTTGa                                                                                                        <  1:1776732/140‑1 (MQ=255)

                                cATTTTATGAATTACAAAGCCTTCACCCAGATCGCTATTGACCTGTTGTCCGCGAAATTGTGCAACTGCACGCAGGCGATCATGACGCATATAATCGCGTCGTTCCTAGCTTTTATGTTTTTTTAATGCAGCAAGTTTGa                                                                                                        <  1:10395966/140‑1 (MQ=255)

                                cATTTTATGAATTACAAAGCCTTCACCCAGATCGCTATTGACCTGTTGTCCGCGAAATTGTGCAACTGCACGCAGGCGATCATGACGCATATAATCGCGTCGTTCCTAGCTTTTATGTTTTTTTAATGCAGCAAGTTTGa                                                                                                        <  1:9263802/140‑1 (MQ=255)

                                cATTTTATGAATTACAAAGCCTTCACCCAGATCGCTATTGACCTGTTGTCCGCGAAATTGTGCAACTGCACGCAGGCGATCATGACGCATATAATCGCGTCGTTCCTAGCTTTTATGTTTTTTTAATGCAGCAAGATTGa                                                                                                        <  1:5371507/140‑1 (MQ=255)

                                       tGAATTACAAAGCGTTCACCCAGATCGCTATTGACCTGTTGTCCGCGAAATTGTGCAACTGCACGCAGGCGATCATGACGCATATAATCGCGTCGTTCCTAGCTTTTATGTTTTTTTAATGCAGCAAGTTTGACtgtg                                                                                                   >  1:8529700/1‑138 (MQ=255)

                                       tGAATTACAAAGCCTTCACCCAGATCGCTATTGACCTGTTGTCCGCGAAATTGTGCAACTGCACGCAGGCGATCATGACGCATATAATCGCGTCGTTCCTAGCTTTTATGTTTTTTTAATGCAGCAAGTTTGACtgtg                                                                                                   <  2:8529652/138‑1 (MQ=255)

                                       tGAATTACAAAGCCTTCACCCAGATCGCTATTGACCTGTTGTCCGCGAAATTGTGCAACTGCACGCAGGCGATCATGACGCATATAATCGCGTCGTTCCTAGCTTTTATGTTTTTTTAATGCAGCAAGTTTGACTGTGaa                                                                                                 >  1:3812226/1‑140 (MQ=255)

                                            tACAAAGCCTTCACCCAGATCGCTATTGACCTGTTGTCCGCGAAATTGTGCAACTGCACGCAGGCGATCATGACGCATATAATCGCGTCGTTCCTAGCTTTTATGTTTTTTTAATGCAGCAAGTTTGACTGTGAAATAtt                                                                                            <  1:5011477/140‑1 (MQ=255)

                                            tACAAAGCCTTCACCCAGATCGCTATTGACCTGTTGTCCGCGAAATTGTGCAACTGCACGCAGGCGATCATGACGCATATAATCGCGTCGTTCCTAGCTTTTATGTTTTTTTAATGCAGCAAGTTTGACTGTGAAATAtt                                                                                            <  1:5653971/140‑1 (MQ=255)

                                            aacacAGCCCTCCCCCACAGCGCTATTGACCTGTTGGCCGCGAAATTGGGCACCTCCACGCAGGCGATCATGACGCACATAATCGCGTCGTTCCTCGCCGATATGATTATTCACTCCAGCCCGTGTGACTGTGAAATAtt                                                                                            <  2:4745093/139‑1 (MQ=255)

                                             aCAAAGCCTTCACCCAGATCGCTATTGACCTGTTGTCCGCGAAATTGTGCAACTGCACGCAGGCGATCATGACGCATATAATCGCGTCGTTCCTAGCTTTTATGTTTTTTTAATGCAGCAAGTTTGACTGTGAAATAttc                                                                                           >  2:9238847/1‑140 (MQ=255)

                                             aCAAAGCCTTCACCCAGATCGCTATTGACCTGTTGTCCGCGAAATTGTGCAACTGCACGCAGGCGATCATGACGCATATAATCGCGTCGTTCCTAGCTTTTATGTTTTTTTAATGCAGCAAGTTTGACTGTGAAATAttc                                                                                           >  2:8282424/1‑140 (MQ=255)

                                                   ccTTCACCCAGATCGCTATTGACCTGTTGTCCGCGAAATTGTGCAACTGCACGCAGGCGATCATGACGCATATAATCGCGTCGTTCCTAGCTTTTATGTTTTTTTAATGCAGCAAGTTTGACTGTGAAATATTCTTCttt                                                                                     >  1:3301963/1‑140 (MQ=255)

                                                      tCACCCAGATCGCTATTGACCTGTTGTCCGCGAAATTGTGCAACTGCACGCAGGCGATCATGACGCATATAATCGCGTCGTTCCTAGCTTTTCTGTTTTTTTAATGCAGCAAGTTTGACTGTGAAATAGTCTTCTTTAAc                                                                                  >  2:7987228/1‑140 (MQ=255)

                                                      tCACCCAGATCGCTATTGACCTGTTGTCCGCGAAATTGTGCAACTGCACGCAGGCGATCATGACGCATATAATCGCGTCGTTCCTAGCTTTTATGTTTTTTTAATGCAGCAAGTTTGACTGTGAAATATTCTTCTTTAAc                                                                                  >  1:1155938/1‑140 (MQ=255)

                                                      tCACCCAGATCGCTATTGACCTGTTGTCCGCGAAATTGTGCAACTGCACGCAGGCGATCATGACGCATATAATCGCGTCGTTCCTAGCTTTTATGTTTTTTTAATGCAGCAAGTTTGACTGTGAAATATTCTTCTTTAAc                                                                                  >  1:1282085/1‑140 (MQ=255)

                                                      tCACCCAGATCGCTATTGACCTGTTGTCCGCGAAATTGTGCAACTGCACGCAGGCGATCATGACGCATATAATCGCGTCGTTCCTAGCTTTTATGTTTTTTTAATGCAGCAAGTTTGACTGTGAAATATTCTTCTTTAAc                                                                                  >  1:3124231/1‑140 (MQ=255)

                                                      tCACCCAGATCGCTATTGACCTGTTGTCCGCGAAATTGTGCAACTGCACGCAGGCGATCATGACGCATATAATCGCGTCGTTCCTAGCTTTTATGTTTTTTTAATGCAGCAAGTTTGACTGTGAAATATTCTTCTTTAAc                                                                                  >  1:2276904/1‑140 (MQ=255)

                                                       cACCCATCTCGCCATAGACCAGTGGTCCGCGTAAGTGTTCAACAGCACGCCGGCGTACATGACGCATATAATAGCGTCGGTCCGAGCATTTATGTTTTTTTAATGCAGCAAGTTTGACTGTGAAATATTCTTCTTTACCg                                                                                 <  2:4077911/140‑1 (MQ=255)

                                                        aCCCAGATCGCTATTGACCTGTTGTCCGCGAAATTGTGCAACTGCACGCAGGCGATCATGACGCATATAATCGCGTCGTTCCTAGCTTTTATGTTTTTTTAATGCAGCAAGTTTGACTGTGAAATATTCTTCTTTAACgg                                                                                <  1:323261/140‑1 (MQ=255)

                                                             gATCGCTATTGACCTGTTGTCCGCGAAATTGTGCAACTGCACGCAGGCGATCATGACGCATATAATCGCGTCGTTCCTAGCTTTTATGTTTTTTTAATGCAGCAAGTTTGACTGTGAAATATTCTTCTTTAACGGATTCa                                                                           >  1:10645252/1‑140 (MQ=255)

                                                             gATCGCTATTGACCTGTTGTCCGCGAAATTGTGCAACTGCACGCAGGCGATCATGACGCATATAATCGCGTCGTTCCTAGCTTTTATGTTTTTTTAATGCAGCAAGTTTGACTGTGAAATATTCTTCTTTAACGGATTCa                                                                           >  2:1706273/1‑140 (MQ=255)

                                                                   tATTGACCTGTTGTCCGCGAAATTGTGCAACTGCACGCAGGCGATCATGACGCATATAATCGCGTCGTTCCTAGCTTTTATGTTTTTTTAATGCAGCAAGTTTGACTGTGAAATATTCTTCTTTAACGGATTCAAAAAcc                                                                     <  1:6241998/140‑1 (MQ=255)

                                                                     ttGACCTGTTGTCCGCGAAATTGTGCAACTGCACGCAGGCGTTCATGACGCATATAATCGCGTCGTTCCTAGCTTTTATGTTTTTTTAATGCAGCAAGTTTGACTGTGAAATATTCTTCTTTAACGGATTCAAAAACCTg                                                                   <  1:10053352/140‑1 (MQ=255)

                                                                     ttGACCTGTTGTCCGCGAAATTGTGCAACTGCACGCAGGCGATCATGACGCATATAATCGCGTCGTTCCTAGCTTTTATGTTTTTTTAATGCAGCAAGTTTGACTGTGAAATATTCTTCTTTAACGGATTCAAAAACCTg                                                                   <  1:1477673/140‑1 (MQ=255)

                                                                     ttGACCTGTTGTCCGCGAAATTGTGCAACTGCACGCAGGCGATCATGACGCATATAATCGCGTCGTTCCTAGCTTTTATGTTTTTTTAATGCAGCAAGTTTGACTGTGAAATATTCTTCTTTAACGGATTCAAAAACCTg                                                                   <  1:2762733/140‑1 (MQ=255)

                                                                        aCCTGTTGTCCGCGAAATTGTGCAACTGCACGCAGGCGATCATGACGCATATAATCGCGTCGTTCCTAGCTTTTATGTTTTTTTAATGCAGCAAGTTTGACTGTGAAATATTCTTCTTTAACGGATTCAAAAACCTGAgg                                                                >  2:8736919/1‑140 (MQ=255)

                                                                          cTGTTGTCCGCGAAATTGTGCAACTGCACGCAGGCGATCATGACGCATATAATCGCGTCGTTCCTAGCTTTTATGTTTTTTTAATGCAGCAAGTTTGACTGTGAAATATTCTTCTTTAACGGATTCAAAAACCTGAGGCa                                                              <  2:8555833/140‑1 (MQ=255)

                                                                          cTGTTGTCCGAGAAATTGTGCAACTGCACGCAGGCGATCATGACGCATATAATCGCGTCGTTCCTAGCTTTTATGATTTTTTAATGCAGCAAGTTTGACTGTGAAATATTCTTCTTTAACGGATTCAAAAACCTGAGGCa                                                              <  2:2302458/140‑1 (MQ=255)

                                                                           tgttgtCCGCGAAATTGTGCAACTGCACGCAGGCGATCATGACGCATATAATCGCGTCGTTCCTAGCTTTTATGTTTTTTTAATGCAGCAAGTTTGACTGTGAAATATTCTTCTTTAACGGATTCAAAAACCTGAGGCAt                                                             <  2:334625/140‑1 (MQ=255)

                                                                             ttgtCCGCGAAATTGTGCCACTGCACGCAGGCGATCATGACGCATATAATCGCGTCGTTCCTAGCGTTTATGTTTGTTTAATGCAGCAAGTGTGACTGTGAAATATTCTTCGTGAACGGAGTCAAAAACCTGAGGCATaa                                                           >  2:10150850/1‑140 (MQ=255)

                                                                             ttgtCCGCGAAATTGTGCAACTGCACGCAGGCGATCATGACGCATATAATCGCGTCGTTCCTAGCTTTTATGTTTTTTTAATGCAGCAAGTTTGACTGTGAAATATTCTTCTTTAACGGATTCAAAAACCTGAGGCATaa                                                           >  1:7712631/1‑140 (MQ=255)

                                                                             ttgtCCGCGAAATTGTGCAACTGCACGCAGGCGATCATGACGCATATAATCGCGTCGTTCCTAGCGTTTATGTTTTTTTAATGCAGCAAGTTTGACTGTGAAATATTCTTCTTTAACGGATTCAAAAACCTGAGGCATaa                                                           >  1:3512491/1‑140 (MQ=255)

                                                                             ttgtCCGCGAAATTGTGCAACTGCACGCAGGCGATCATGACGCATATAATCGCGTCGTTACTAGCTTTTATGTTTTTTTAATGCAGCAAGTTTGACTGTGAAATATTCTTCTTTAACGGATTCAAAAACCTGAGGCATaa                                                           >  2:5093628/1‑140 (MQ=255)

                                                                                 ccGCGAAATTGTGCAACTGCACGCAGGCGATCATGACGCATATAATCGCGTCGTTCCTAGCTTTTATGTTTTTTTAATGCAGCAAGTTTGACTGTGAAATATTCTTCTTTAACGGATTCAAAAACCTGAGGCATAAATGa                                                       <  1:5271150/140‑1 (MQ=255)

                                                                                 ccGCGAAATTGTGCAACTGCACGCAGGCGATCATGACGCATATAATCGCGTCGTTCCTAGCTTTTATGTTTTTTTAATGCAGCAAGTTTGACTGTGAAATATTCTTCTTTAACGGATTCAAAAACCTGAGGCATAAATGa                                                       <  2:10645252/140‑1 (MQ=255)

                                                                                 ccGCGAAATTGTGCAACTGCACGCAGGCGATCATGACGCATATAATCGCGTCGTTCCTAGCTTTTATGTTTTTTTAATGCAGCAAGTTTGACTGTGAAATATTCTTCTTTAACGGATTCAAAAACCTGAGGCATAAATGa                                                       <  1:5982812/140‑1 (MQ=255)

                                                                                  cgcgAAATTGTGCAACTGCACGCAGGCGATCATGACGCATATAATCGCGTCGTTCCTAGCTTTTATGTTTTTTTAATGCAGCAAGTTTGACTGTGAAATATTCTTCTTTAACGGATTCAAAAACCTGAGGCATAAATGaa                                                      >  1:9451221/1‑140 (MQ=255)

                                                                                  cgcgAAATTGTGCAACTGCACGCAGGCGATCATGACGCATATAATCGCGTCGTTCCTAGCTTTTATGTTTTTTTAATGCAGCAAGTTTGACTGTGAAATATTCTTCTTTAACGGATTCAAAAACCTGAGGCATAAATGaa                                                      >  1:9134116/1‑140 (MQ=255)

                                                                                  cgcgAAATTGTGCAACTGCACGCAGGCGATCATGACGCATATAATCGCGTCGTTCCTAGCTTTTATGTTTTTTTAATGCAGCAAGTTTGACTGTGAAATATTCTTCTTTAACGGATTCAAAAACCTGAGGCATAAATGaa                                                      >  1:2967464/1‑140 (MQ=255)

                                                                                    cgAAATTGTGCAACTGCACGCAGGCGATCATGACGCATATAATCGCGTCGTTCCTAGCTTTTATGTTTTTTTAATGCAGCAAGTTTGACTGTGAAATATTCTTCTTTAACGGATTCAAAAACCTGAGGCATAAATGAAAg                                                    >  1:1970211/1‑140 (MQ=255)

                                                                                    cgAAATTGTGCAACTGCACGCAGGCGATCATGACGCATATAATCGCGTCGTACCTCGCTTTTATGTTTTTTTAATGCAGCAAGTTTGACTGTGAAATATTCTACTTTAACGGATTCAAAAACCTGAGGCATAAATGAAAg                                                    >  2:6498256/1‑140 (MQ=255)

                                                                                       aaTTGTGCAACTGCACGCAGGCGATCATGACGCATATAATCGCGTCGTTCCTAGCTTTTATGTTTTTTTAATGCAGCAAGTTTGACTGTGAAATATTCTTCTTTAACGGATTCAAAAACCTGAGGCATAAATGAAAGCCa                                                 >  1:4209964/1‑140 (MQ=255)

                                                                                       aaTTGTGCAACTGCACGCAGGCGATCATGACGCATATAATCGCGTCGTTCCTAGCTTTTATGTTTTTTTAATGCAGCAAGTTTGACTGTGAAATATTCTTCTTTAACGGATTCAAAAACCTGAGGCATAAATGAAAGCCa                                                 >  1:4707182/1‑140 (MQ=255)

                                                                                         ttGTGCAACTGCACGCAGGCGATCATGACGCATATAATCGCGTCGTTCCTAGCTTTTATGTTTTTTTAATGCAGCAAGTTTGACTGTGAAATATTCTTCTTTAACGGATTCAAAAACCTGAGGCATAAATGAAAGCCAgg                                               <  2:903249/140‑1 (MQ=255)

                                                                                          tgtgCAACTGCACGCAGGCGATCATGACGCATATAATCGCGTCGTTCCTAGCTTTTATGTTTTTTTAATGCAGCAAGTTTGACTGTGAAATATTCTTCTTTAACGGATTCAAAAACCTGAGGCATAAATGAAAGCCAGGt                                              >  1:7151728/1‑140 (MQ=255)

                                                                                             gCAACTGCACGCAGGCGATCATGACGCATATAATCGCGTCGTTCCTAGCTTTTATGTTTTTTTAATGCAGCAAGTTTGACTGTGAAATATTCTTCTTTAACGGATTCAAAAACCTGAGGCATAAATGAAAGCCAGGTACt                                           <  2:7117325/140‑1 (MQ=255)

                                                                                                 cTGCACGCAGGCGATCATGACGCATATACTCGCGTCGTTCCTATCTTTTATGTTTTTTTAATGCAGCAAGTTTGACTGTGAAATATTCTTCTTTAACGGATTCAAAAACCTGAGGCATAAATGAAAGCCAGGTACTTggg                                       <  2:9384029/140‑1 (MQ=255)

                                                                                                   gCACGCAGGCGATCATGACGCATATAATCGCGTCGTTCCTAGCTTTTATGTTTTTTTAATGCAGCAAGTTTGACTGTGAAATATTCTTCTTTAACGGATTCAAAAACCTGAGGCATAAATGAAAGCCAGGTACTTGGGGt                                     >  1:6515689/1‑140 (MQ=255)

                                                                                                      cGCAGGCGATCATGACGCATATAATCGCGTCGTTCCTAGCTTGTATGTTTTTTTAATGCAGCAAGTTTGACTGTGAACTATTCTTCTGTAACGGATTCAAAAACCTGAGGCAGAAATGAAAGCCAGGTACTTGGGGTTTc                                  >  2:3597122/1‑140 (MQ=255)

                                                                                                        cAGGCGATCATGACGCATATAATCGCGTCGTTCCTAGCTTTTATGTTTTATTAATGAAGCAAGTTTGACTGTGAAAAATTCTTCTATAACGGATTCAAAAACCTGAGGCATAAAAGAAAGCAAGGTACTTGGGGTTTCGt                                >  1:7451110/1‑140 (MQ=255)

                                                                                                         aGGCGATCATGACGCATATAATCGCGTCGTTCCTAGCTTTTATGTTTTTTTAATGCAGCAAGTTTGACTGTGAAATATTCTTCTTTAACGGATTCAAAAACCTGAGGCATAAATGAAAGCCAGGTACTTGGGGTTTCGTa                               >  1:8773552/1‑140 (MQ=255)

                                                                                                           gCGATCATGACGCATATAATCGCGTCGTTCCTAGCTTTTATGTTTTTTTAATGCAGCAAGTTTGACTGTGAAATATTCTTCTTTAACGGATTCAAAAACCTGAGGCATAAATGAAAGCCAGGTACTTGGGGTTTCGTAGc                             >  1:810540/1‑140 (MQ=255)

                                                                                                           gCGATCATGACGCATATAATCGCGTCGTTCCTAGCTTTTATGTTTTTTTAATGCAGCAAGTTTGACTGTGAAATATTCTTCTTTAACGGATTCAAAAACCTGAGGCATAAATGAAAGCCAGGTACTTGGGGTTTCGTAGc                             >  1:84531/1‑140 (MQ=255)

                                                                                                              aTCATGACGCATATAATCGCGTCGTTCCTAGCTTTTATGTTTTTTTAATGCAGCAAGTTTGACTGTGAAATATTCTTCTTTAACGGATTCAAAAACCTGAGGCATAAATGAAAGCCGGGTACTTGGGGTTTCGTAGCCga                          >  1:10801741/1‑140 (MQ=255)

                                                                                                                cATGACGCATATAATCGCTTCGTTACTACCTAATATGTATTATTAATGCAGCAATTTTGACTGTGAAATATTCTCCTTTAACGGATTCAAAAACCTGAGGCAAAAAAGAAATCCAGGTACTTGGGGTTTCGTAGCCgaga                        <  2:4531933/140‑1 (MQ=255)

                                                                                                                cATGACGCATATAATCGCGTCGTTCCTANCTTTTATGTTTTTTTAATGCAGCAAGTTTGACTGTGAAATATTCTTCTTTAACGGATTCAAAAACCTGAGGCATAAATGAAAGCCAGGTACTTGGGGTTTCGTAGCCgaga                        <  1:5885814/140‑1 (MQ=255)

                                                                                                                cATGACGCATATAATCGCGTCGTTCCTAGCTTTTATGTTTTTTTAATGCAGCAAGTTTGACTGTGAAATATTCTTCTTTAACGGATTCAAAAACCTGAGGCATAAATGAAAGCCAGGTACTTGGGGTTTCGTAGCCgaga                        <  1:3065076/140‑1 (MQ=255)

                                                                                                                cATGACGCATATAATCGCGTCGTTCCTAGCTTTTATGTTTTTTTAATGCAGCAAGTTTGACTGTGAAATATTCTTCTTTAACGGATTCAAAAACCTGAGGCATAAATGAAAGCCAGGTACTTGGGGTTTCGTAGCCgaga                        >  1:2404881/1‑140 (MQ=255)

                                                                                                                cATGACGCATATAATCGCGTCGTTCCTAGCTTTTATGTTTTTTTAATGCAGCAAGTTTGACTGTGAAATATTCTTCTTTAACGGATTCAAAAACCTGAGGCATAAATGAAAGCCAGGTACTTGGGGTTTCGTAGCCgaga                        <  2:2449757/140‑1 (MQ=255)

                                                                                                                     cGCATATAATCGCGTCGTTCCTAGCTTTTATGTTTTTTTAATGCAGCAAGTTTGACtgtg                                                                                                   >  1:4483978/1‑60 (MQ=255)

                                                                                                                     cGCATATAATCGCGTCGTTCCTAGCTTTTATGTTTTTTTAATGCAGCAAGTTTGACtgtg                                                                                                   <  2:4483978/60‑1 (MQ=255)

                                                                                                                     cGCATATAATCGCGTCGTTCCTAGCTTTTATGTTTTTTTAATGCAGCAAGTTTGACTGTGAAATATTCTTCTTTAACGGATTCAAAAACCTGAGGCATAAATGAAAGCCAGGTACTTGGGGTTTCGTAGCCGAGACTTTg                   >  2:10443201/1‑140 (MQ=255)

                                                                                                                     cGCATATAATCGCGTCGTTCCTAGCTTTTATGTTTTTTTAATGCAGCAAGTTTGACTGTGAAATATTCTTCTTTAACGGATTCAAAAACCTGAGGCATAAATGAAAGCCAGGTACTTGGGGTTTCGTAGCCGAGAATTTg                   >  2:6833877/1‑140 (MQ=255)

                                                                                                                     cGCATATAATCGCGTCGTTCCTAGCTTTTATGTTTTTTTAATGCAGCAAGTTTGACTGTGAAATATTCTTCTTTAACGGATTCAAAAACCTGAGGCATAAATGAAAGCCAGGTACTTGGGGTTTCGTAGCCGAGAATTTg                   <  2:4164996/140‑1 (MQ=255)

                                                                                                                     cGCATATAATCGCGTCGTTCCTAGCTTTTATGTTTTTTTAATGCAGCAAGTTTGACTGTGAAATATTCTTCTTTAACGGATTCAAAAACCTGAGGCATAAATGAAAGCCAGGTACTTGGGGTTTCGTAGCCGAGAATTTg                   >  2:387866/1‑140 (MQ=255)

                                                                                                                     cGCATATAATCGCGTCGTTCCTAGCTTTTATGTTTTTTTAATGCAGCAAGTTTGACTGTGAAATATTCTTCTTTAACGGATTCAAAAACCTGAGGCATAAATGAAAGCCAGGTACTTGGGGTTTCGTAGCCGAGAATTTg                   >  2:8902073/1‑140 (MQ=255)

                                                                                                                        atatAATCGCGTCGTTCCTAGCTTTTATGTTTTTTTAATGCAGCAAGTTTGACTGTGAAATATTCTTCTTTAACGGATTCAAAAACCTGAGGCATAAATGAAAGCCAGGTACTTgg                                        <  2:10748824/116‑1 (MQ=255)

                                                                                                                         tataATCGCGTCGTTCCTAGCTTTTATGTTTTTTTAATGCAGCAAGTTTGACTGTGAAATATTCTTCTTTAACGGATTCAATAACCTGAGGACTAAATGAATGCCAGGTACTTGGGGTTTCGTAGCCGAGAATTTGAGGa               >  2:7689358/1‑140 (MQ=255)

                                                                                                                         tataATCGCGTCGTTCCTAGCTTTTATGTTTTTTTAATGCAGCAAGTTTGACTGTGAAATATTCTTCTTTAACGGATTCAAAAACCTg                                                                   >  1:6457038/1‑88 (MQ=255)

                                                                                                                         tataATCGCGTCGTTCCTAGCTTTTATGTTTTTTTAATGCAGCAAGTTTGACTGTGAAATATTCTTCTTTAACGGATTCAAAAACCTGAGGCATAAATGAAAGCCAGGTACTTGGGGTTTCGTAGCCGAGAATTTGCGGa               >  2:5566368/1‑140 (MQ=255)

                                                                                                                         tataATCGCGTCGTTCCTAGCTTTTATGTTTTTTTAATGCAGCAAGTTTGACTGTGAAATATTCTTCTTTAACGGATTCAAAAACCGGAGGCATAAATGAAAGCCAGGTACTTGGGGTTTCGTAGCCGAGAATTTGCGGa               >  2:6026850/1‑140 (MQ=255)

                                                                                                                              tCGCGTCGTTCCTAGCTTTTATGTTTTTTTAATGCAGCAAGTTTGACTGTGAAATATTCTTCTTTAACGGATTCAAAAACCTGAGGCATAAATGAAAGCCAGGTACTTGGGGTTTCGTAGCCGAGAATTTGCGGAATAGt          >  2:4282564/1‑140 (MQ=255)

                                                                                                                                 cgtcgtTCCTAGCTTTTATGTTTTTTTAATGCAGCAAGTTTGACTGTGAAATATTCTTCTTTAACGGATTCAAAAACCTGAGGCATAAATGa                                                       <  2:200955/92‑1 (MQ=255)

                                                                                                                                 cgtcgtTCCTAGCTTTTATGTTTTTTTAATGCAGCAAGTTTGACTGTGAAATATTCTTCTTTAACGGATTCAAAAACCTGAGGCATAAATGAAAGCCAGGTACTTGGGGTTTCGTAGCCGAGAATTTGCGGAATAGTTCg       >  1:9711118/1‑140 (MQ=255)

                                                                                                                                  gtcgtTCCTAGCTTTTATGTTTTTTTAATGCAGCAAGTTTGACTGTGAAATATTCTTCTTTAACGGATTCAAAAACCTGAGGCATAAATGAAAGCCAGGTACTTGGGGTTTCGTAGCCGAGAATTTGCGGAATAGTTCgg      <  2:7304614/140‑1 (MQ=255)

                                                                                                                                  gtcgtTCCTAGCTTTTATGTTTTTTTAATGCAGCAAGTTTGACTGTGAAATATTCTTCTTTAACGGATTCAAAAACCTGAGGCATAAATGAAAGCCAGGTACTTGGGGTTTCGTAGCCGAGAATTTGCGGAATAGTTCgg      >  1:8255519/1‑140 (MQ=255)

                                                                                                                                    cgtTCCTTGCTTTTATGTTTTTTTAATGCAGCAAGTTTGACTGTGAAATATTCTTCTTTAACGGATTCAAAAACCTGAGGCATAAATGAAAGCCAGGTACTTGGGGTTTCGTAGCCGAGAATTTGCGGAATAGTTCggca    <  1:8692014/140‑1 (MQ=255)

                                                                                                                                     gtTCCTAGCTTTTATGTATTCTTAATGCAGCAAGTTTGACTGTGTAATATTCTCCTTTACCGGATTCATAAACCTGTGTCATAAATGAAAGCCAGGTACTTGTGGTTTCTTAGCCGTGATTTTGCGGATTAGTTCggcag   <  2:9197050/140‑1 (MQ=255)

                                                                                                                                      ttCCTAGCTTTTATGTTTTTTTAATGCAGCAAGTTTGACTGTGAAATATTCTTCTTTAACGGATTCAAAAACCTGAGGCATAAATGAAAGCCAGGTACTTGGGGTTTCGTAGCCGAGAATTTGCGGAATAGTTCggcagg  >  2:9742385/1‑140 (MQ=255)

ATCCAGGTTTTCATGCAATTTGCTCAAAGAATCATTTTATGAATTACAAAGCCTTCACCCAGATCGCTATTGACCTGTTGTCCGCGAAATTGTGCAACTGCACGCAGGCGATCATGACGCATATAATCGCGTCGTTCTTAGCTTTTATGTTTTTTTAATGCAGCAAGTTTGACTGTGAAATATTCTTCTTTAACGGATTCAAAAACCTGAGGCATAAATGAAAGCCAGGTACTTGGGGTTTCGTAGCCGAGAATTTGCGGAATAGTTCGGCAGG  >  NZ_CP025268/382973‑383246

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`