| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP025268 | 7,926 | Δ1 bp | pseudogene (35/1432 nt) | yaaJ ← | sodium:alanine symporter family protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP025268 | 7,923 | 0 | A | . | 99.7% | 2706.8 / 0.2 | 569 | pseudogene (38/1432 nt) | yaaJ | sodium:alanine symporter family protein |
| Reads supporting (aligned to +/- strand): ref base A (0/2); new base . (183/383); total (184/385) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 662 total aligned reads displayed.
GTTAAACCGCCTGGCTGTGGATGAATGCTATTTTTAAGACTTTTGCCAAACTGGCGGATGTAGCGAAACTGCACAAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCCAAAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAATTGTTTAAGAAGTATATACGCTACGAGGTACTTGATAACTTCTGCG > NZ_CP025268/7784‑8059 | gTTAAACCGCCTGGCTGTGGATGAATGCTATTTTTAAGACTTTTGCCAAACTGGCGGATGTAGCGAAACTGCACAAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCCa < 1:4402305/140‑1 (MQ=255) aaaCCGCCTGGCTGTGGATGAATGCTATTTTTAAGACTTTTGCCAAACTGGCGGATGTAGCGAAACTGCACAAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCCaaag > 1:6242636/1‑139 (MQ=255) aaaCCGCCTGGCTGTGGATGAATGCTATTTTTAAGACTTTTGCCAAACTGGCGGATGTAGCGAAACTGCACAAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCCaaag > 2:6711860/1‑139 (MQ=255) aaCCGCCTGGCTGTGGATGAATGCTATTTTTAAGACTTTTGCCAAACTGGCGGATGTAGCGAAACTGCACAAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCCaaagg > 1:6097664/1‑138 (MQ=255) cccGCCTGGCTGTGGATGACTGCTATTTTTAAGACTTTGGCCAAACGGGCGGATGTAGCGAAACTGCACAAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCCaaagga < 2:1984278/139‑4 (MQ=255) aCCGCCTGGCTGTGGATGAATGCTATTTTTAAGACTTTTGCCAAACTGGCGGATGTAGCGAAACTGCACAAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCCaaagga < 2:1621250/140‑4 (MQ=255) aCCGCCTGGCTGTGGATGAATGCCATTTTTAAGACTTTTGCCAAACTGGCGGATGTAGCGAAACTGCACAAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCCaaagga < 2:5073874/140‑4 (MQ=255) ccGCCTGGCTGTGGATGAATGCTATTTTTAAGACTTGTGCCAAACTGGCGGATGTAGCGAAACTGCACAAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCCaaaggac < 2:4113050/140‑5 (MQ=255) cGCCTGGCTGTGGATGAATGCTATTTTTAAGACTTTTGCCAAACTGGCGGATGTAGCGAAACTGCACAAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACg < 1:347300/140‑1 (MQ=255) cGCCTGGCTGTGGATGAATGCTATTTTTAAGACTTTTGCCAAACTGGCGGATGTAGCGAAACTGCACAAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACg < 1:8316406/140‑1 (MQ=255) gCCTGGCTGTGGATGAATGCTATTTTTAAGACTTTTGCCAAACTGGCGGATGTAGCGAAACTGCACAAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGc < 2:5285748/140‑1 (MQ=255) gCCTGGCTGTGGATGAATGCTATTTTTAAGACTTTTGCCAAACTGGCGGATGTAGCGAAACTGCACAAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGc < 1:5687541/140‑1 (MQ=255) gCCTGGCTGTGGATGAATGCTATTTTTAAGACTTTTGCCAAACTGGCGGATGTAGCGAAACTGCACAAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGc < 1:2420537/140‑1 (MQ=255) gCCTGGCTGTGGATGAATGCTATTTTTAAGACTTTTGCCAAACTGGCGGATGTAGCGAAACTGCACAAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGc < 1:2262019/140‑1 (MQ=255) ccTGGCTGTGGATGAATGCTATTTTTAAGACTTTTGCCAAACTGGCGGATGTAGCGAAACTGCACAAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCCaaaggac > 1:9415952/1‑133 (MQ=255) ccTGGCTGTGGATGAATGCTATTTTTAAGACTTTTGCCAAACTGGCGGATGTAGCGAAACTGCACAAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCCaaaggac < 2:9415952/137‑5 (MQ=255) ccTGGCTGTGGATGAATGCTATTTTTAAGACTTTTGCCAAACTGGCGGATGTAGCGAAACTGCACAAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCt > 2:901706/1‑140 (MQ=255) ccTGGCTGTGGATGAATGCTATTTTTAAGACTTTTGCCAAACTGGCGGATGTAGCGAAACTGCACAAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCt > 1:169012/1‑140 (MQ=255) cTGGCTGTGGATGAATGCTATTTTTAAGACTTTTGCCAAACTGGCGGATGTAGCGAAACTGCACAAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTg > 2:2683555/1‑140 (MQ=255) aTGCTATGTTTAAGACTTTTGCCAAACTGGCGGAGGGAGCGAAACTGCACAAATCCGGGGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGaa > 2:1777763/1‑140 (MQ=255) tGCTATTTTTAAGACTTTTGCCAAACTGGCGGATGTAGCGAAACTGCACAAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGaaa > 2:7232464/1‑140 (MQ=255) cTATTTTTAAGACTTTTGCCAAACTGGCGGATGTAGCGAAACTGCACAAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGaaaaa > 1:10660899/1‑140 (MQ=255) tttttAAGACTTTTGCCAAACTGGCGGATGTAGCGAAACTGCACAAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATc > 2:10771422/1‑140 (MQ=255) tttAAGACTTTTGCCAAACTGGCGGATGTAGCGAAACTGCACAAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTg > 2:10644275/1‑140 (MQ=255) tttAAGACTTTTGCCAAACTGGCGGATGTAGCGAAACTGCACAAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTg < 1:3860943/140‑1 (MQ=255) ttAAGACTTTTGCCAAACTGGCGGATGTAGCGAAACTGCACAAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTgg > 1:9921639/1‑140 (MQ=255) ttAAGACTTTTGCCAAACTGGCGGATGTAGCGAAACTGCACAAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTgg > 1:2974464/1‑140 (MQ=255) tAAGACTTTTGCCAAACTGGCGGATGTAGCGAAACTGCACAAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGgc < 2:10839150/140‑1 (MQ=255) aaGACTTTTGCCAAACTGGCGGATGTAGCGAAACTGCACAAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGgca > 1:6390367/1‑140 (MQ=255) aGACTTTTGCCAAACTGGCGGATGTAGCGAAACTGCACAAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGgcat < 2:5798555/140‑1 (MQ=255) cTTTTGCCAAACTGGCGGATGTAGCGAAACTGCACAAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGgcatgca < 2:4490396/140‑1 (MQ=255) ttttGCCAAACTGGCGGATGTAGCGAAACTGCACAAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGgcatgcat > 2:9271865/1‑140 (MQ=255) ttttGCCAAACTGGCGGATGTAGCGAAACTGCACAAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGgc < 2:2608388/134‑1 (MQ=255) ttGCCAAACTGGCGGATGTAGCGAAACTGCACAAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCatat > 1:5422970/1‑140 (MQ=255) tGCCAAACTGGCGGATGTAGCGAAACTGCACAAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATc < 1:5204889/140‑1 (MQ=255) gCCAAACTGGCGGATGTAGCGAAACTGCACAAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATcc < 2:3430878/140‑1 (MQ=255) cGAACCTGCACAAATCCGGTGCGAACAGTGAACCAACAAACAGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑ACAGGACGCTGTTAATGAAGGCGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGa < 2:11399358/140‑1 (MQ=255) cGAAACTGCACAAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGa > 1:4107788/1‑140 (MQ=255) cGAAACTGCACAAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGa < 1:1442018/140‑1 (MQ=255) aaCTGCACAAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGa < 2:3675502/140‑1 (MQ=255) aCTGCACAAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGAc > 1:2585328/1‑140 (MQ=255) cTGCACAAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAAAGAAGGAGAAAAAATCTGGCATCCATATCCCTCTTATTGCCGGTCGCGATGACt > 2:11616309/1‑140 (MQ=255) cacaAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGTAGAGCAGGTAAATCAGTACCGATCCCC‑AAAGGACGCTGTTTATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTc < 2:6360892/140‑1 (MQ=255) cacaAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTc < 2:10100297/140‑1 (MQ=255) cacaAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTc > 2:8069075/1‑140 (MQ=255) cacaAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTc < 1:8915207/140‑1 (MQ=255) cacaAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTc < 2:2350644/140‑1 (MQ=255) cacaAATCCGGTGCGAAAAGTGAACCAACAACCAGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTc < 1:10827755/140‑1 (MQ=255) aTCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCtgtg > 2:11206791/1‑140 (MQ=255) aTCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCtgtg > 1:3226737/1‑140 (MQ=255) cGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTaa < 2:3738338/140‑1 (MQ=255) cGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCATGTGTaa > 1:6653996/1‑140 (MQ=255) tGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACg < 2:9591815/140‑1 (MQ=255) aaaaGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTAc > 1:7730001/1‑140 (MQ=255) aaaaGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTGTCCTGTGTAATCGTTAc > 2:10459547/1‑140 (MQ=255) tGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAAtt > 1:1302912/1‑140 (MQ=255) gAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAATTg > 1:5569285/1‑140 (MQ=255) ccAACAACCTGCTCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATTAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAATTGttt < 2:8524408/140‑1 (MQ=255) aacaacCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑ACAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAACCGTTACCAATTGTTTaa < 2:1033687/140‑1 (MQ=255) acaacCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAATTACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCCTATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACTTTCCCAATTGTTTaag < 2:3175659/140‑1 (MQ=255) acaacCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAATTGTTTaag < 1:9714994/140‑1 (MQ=255) acaacCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAATTGTTTaag < 1:7606458/140‑1 (MQ=255) acaacCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAATTGTTTaag < 1:6912546/140‑1 (MQ=255) acaacCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAATTGTTTaag < 2:6567804/140‑1 (MQ=255) acaacCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAATTGTTTaag < 1:1861305/140‑1 (MQ=255) acaacCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAATTGTTTaag < 2:9753055/140‑1 (MQ=255) cacccTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAATTGTTTaaga < 1:8592795/137‑1 (MQ=255) cacccTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAATTGTTTaaga < 1:7446201/137‑1 (MQ=255) caacCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAATTGTTTaaga < 2:2118520/140‑1 (MQ=255) caacCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAATTGTTTaaga < 1:11436385/140‑1 (MQ=255) caacCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAATTGTTTaaga < 2:2907496/140‑1 (MQ=255) acCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AATGGAGGCTGGAAAGGAAGGAGAAAAAAAATGGCTTCCATCGCCCGCTAATTGCCGGTCGCGATGAGTTGCCTGTGTAAACGTTACCAATTGTTTaagaag > 1:10319190/1‑140 (MQ=255) acCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAATTGTTTaagaag > 1:11001619/1‑140 (MQ=255) ccTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAATGACGCTGTTAATGAAGGAGACAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAATTGTTTAAGAAGt < 2:5462269/140‑1 (MQ=255) ccTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAATTGTTTAAGAAGt < 1:10089385/140‑1 (MQ=255) tGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAATTGTTTAAGAAGtat < 2:6097664/140‑1 (MQ=255) gcgcCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAATTGTTTAAGAAGtata < 1:3759125/140‑1 (MQ=255) gcgcCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAATTGTTTAAGAAGtata < 1:4167924/140‑1 (MQ=255) gcgcCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAATTGTTTAAGAAGtata < 1:4984592/140‑1 (MQ=255) gcgcCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGATGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAACCGTTACCAATTGTTTAAGAAGtata < 2:3045037/140‑1 (MQ=255) cgcCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTgg < 1:591287/67‑1 (MQ=255) gcCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAATTGTTTAAGAAGtatata < 2:1422430/140‑1 (MQ=255) cGAAGAGCAGGTAAATCCTTACCGATCCCC‑AAAGCACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAATTGTTTAAGAAGTATATACg < 1:7088799/140‑1 (MQ=255) cGAAGAGCAGGTAAATCAGTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAATTGTTTAAGAAGTATATACg < 1:7938577/140‑1 (MQ=255) gAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAATTGTTTAAGAAGTATATACGc > 2:8791991/1‑140 (MQ=255) aaGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAATTGTTTAAGAAGTATATACGCt > 1:9570694/1‑140 (MQ=255) agagCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAATTGTTTAAGAAGTATATACGCTa < 1:9262940/140‑1 (MQ=255) agCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAATTGTTTAAGAAGTATATACGCTACg < 1:11206791/140‑1 (MQ=255) gTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAATTGTTTAAGAAGTATATACGCTACGAGGTa > 2:8252378/1‑140 (MQ=255) gTAAATCAGTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAATTGTTTAAGAAGTATATACGCTACGAGGTa < 1:3080987/140‑1 (MQ=255) tCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTgg > 2:3894732/1‑49 (MQ=255) tCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATCTCCCGCTTATTGCCGGTCGCGATGACTGTCCTGTGGAATCGTTAGCAGTTGTTTAGGAAGTTTATGCGCTACGCGGtcggtga > 2:7503960/1‑134 (MQ=255) tCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAATTGTTTAAGAAGTATATACGCTACGAGGTACTTGa > 1:3589127/1‑140 (MQ=255) aCCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAATTGTTTAAGAAGTATATACGCTACGAGGTCCTTGATAACt > 1:5107040/1‑140 (MQ=255) aCCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAATTGTTTAAGAAGTATATACGCTACGAGGTACTTGATAACt > 1:475725/1‑140 (MQ=255) aCCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAATTGTTTAAGAAGTATATACGCTACGAGGTACTTGATAACt > 2:4897800/1‑140 (MQ=255) atccccAAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCGTGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTAGCAATTGTTTAAGAAGTATATACGCTACGAGGTACTTGATATCTTCTg > 1:1581483/3‑140 (MQ=255) atccccAAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATAACCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAATTGTTAAAGAAGTATATACGCTACGAGGTACTTGATAACTTCTg > 2:7857731/3‑140 (MQ=255) ccccAAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAATTGTTTAAGAAGTATATACGCTACGAGGTACTTGATAACTTCTGCg < 1:2832067/140‑1 (MQ=255) ccccAAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAATTGTTTAAGAAGTATATACGCTACGAGGTACTTGATAACTTCTGCg < 1:7266785/140‑1 (MQ=255) | GTTAAACCGCCTGGCTGTGGATGAATGCTATTTTTAAGACTTTTGCCAAACTGGCGGATGTAGCGAAACTGCACAAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCCAAAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAATTGTTTAAGAAGTATATACGCTACGAGGTACTTGATAACTTCTGCG > NZ_CP025268/7784‑8059 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |