| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP025268 | 1,678,164 | (T)8→7 | pseudogene (157/367 nt) | mdtJ ← | multidrug/spermidine efflux SMR transporter subunit MdtJ |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP025268 | 1,678,157 | 0 | T | . | 99.6% | 2356.8 / 0.7 | 496 | pseudogene (164/367 nt) | mdtJ | multidrug/spermidine efflux SMR transporter subunit MdtJ |
| Reads supporting (aligned to +/- strand): ref base T (0/2); new base . (262/231); total (262/234) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.21e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 520 total aligned reads displayed.
AACACAATCCCGGCGACCAGGGTGGTTAACCCGGCAATTTTCATCAGCGATAAACTTTCGTCGAATAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGATTTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTAATTTCTGTAGCAATAGCCAGAC > NZ_CP025268/1678018‑1678295 | cacaATCCCGGCGACCAGGGTGGTTAACCCGGCAATTTTCATCAGCGATAAACTTTCGTCGAATAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGAttt > 2:2339455/1‑140 (MQ=255) tCCCGGCGACCAGGGTGGTTAACCCGGCAATTTTCATCAGCGATAAACTTTCGTCGAATAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGAttttttta > 1:3674543/1‑139 (MQ=255) cccGGCGACCAGGGTGGTTAACCCGGCAATTTTCATCAGCGATAAACTTTCGTCGAATAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGAtttttttaa < 2:8789721/140‑3 (MQ=255) cGGCGACCAGGGTGGTTAACCCGGCAATTTTCATCAGCGATAAACTTTCGTCGAATAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGAtttttttaacg > 1:9551548/1‑136 (MQ=255) ggCGACCAGGGTGGTTAACCCGGCAATTTTCATCAGCGATAAACTTTCGTCGAATAACAAAACGCTAAACAAGGTAATAAATAAACTACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACgg < 1:6432575/140‑1 (MQ=255) ggCGACCAGGGTGGTTAACCCGGCAATTTTCATCAGCGATAAACTTTCGTCGAATAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACgg > 1:2010819/1‑140 (MQ=255) gCGACCAGGGTGGTTAACCCGGCAATTTTCATCAGCGATAAACTTTCGTCGAATAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGc > 1:3031715/1‑140 (MQ=255) aGGGTGGTTAACCCGGCAATTTTCATCAGCGATAAACTTTCGTCGAATAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAaga < 1:8208235/140‑1 (MQ=255) gggTGGTTAACCCGGCAATTTTCATCAGCGATAAACTTTCGTCGAATAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAagag > 2:10568322/1‑140 (MQ=255) gggTGGTTAACCCGGCAATTTTCATCAGCGATAAACTTTCGTCGAATAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAagag < 2:11368081/140‑1 (MQ=255) ggtggtTAACCCGGCAATTTTCATCAGCGATAAACTTTCGTCGAATAACAAAACGCTAAACACGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAagaga < 2:9165640/140‑1 (MQ=255) ggtggtTAACCCGGCAATTTTCATCAGCGATAAACTTTCGTCGAATAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAagaga < 2:2993071/140‑1 (MQ=255) gtggtTAACCCGGCAATTTTCATCAGTGATAAACTTTCGTCGAATAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTATCGGCGAAagagag < 1:6124988/140‑1 (MQ=255) gtggtTAACCCGGCAATTTTCATCAGCGATAAACTTTCGTCGAATAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAagagag < 1:9904858/140‑1 (MQ=255) gtggtTAACCCGGCAAGTTTCATCAGCGATAAACTTTCGTCGAATAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAagagag < 1:6697492/140‑1 (MQ=255) ggtTAACTCGCCAATTTTCATCAGCGATAAACTTTCGTCGAATAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGaa < 1:10877775/140‑1 (MQ=255) ggtTAACCCGGCATTTTTCATCAGCGATAAACTTTCGTCGAATAACAAAACGCTAAACAAGTTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAtgagagta < 2:2152221/140‑3 (MQ=255) ggtTAACCCGGCAATTTTCATCAGCGATAAACTTTCGTCGAATAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGaa < 1:784807/140‑1 (MQ=255) ggtTAACCCGGCAATTTTCATCAGCGATAAACTTTCGTCGAATAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGaa < 2:4270891/140‑1 (MQ=255) ggatAACCCGGCAATTTTCATCAGCGATAAACTTTCGTCGAATAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGaa < 2:11638794/137‑1 (MQ=255) cccGGCAATTTTCATCAGCGATAAACTTTCGTCGAATAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAatatat > 2:2485352/1‑140 (MQ=255) ccGGCAATTTTCATCAGCGATAAACTTTCGTCGAATAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAAtatata > 2:1821994/1‑140 (MQ=255) cGGCAATTTTCATCAGCGATAAACTTTCGTCGAATAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATAc < 2:9383667/140‑1 (MQ=255) gCAATTTTCATCAGCGATAAACTTTCGTCGAATAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGa < 2:5653844/140‑1 (MQ=255) cAATTTTCATCAGCGATAAACTTTCGTCGAATAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGAc > 2:6097465/1‑140 (MQ=255) tttCATCAGCGATAAACTTTCGTCGAATAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACagag < 2:3109453/140‑1 (MQ=255) ttCATCAGCGATAAACTTTCGTCGAATAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAgaga > 1:11141197/1‑140 (MQ=255) tcatcaGCGATAAACTTTCGTCGAATAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGaa > 2:10853135/1‑140 (MQ=255) catcaGCGATAAACTTTCGTCGAATAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGaaa < 1:6896946/140‑1 (MQ=255) atcaGCGATAAACTTTCGTCGAATAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAat > 1:6260097/1‑140 (MQ=255) cGATAAACTTTCGTCGAATAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAAtcatca > 1:10014106/1‑140 (MQ=255) aTAAACTTTCGTCGAATAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCAcc < 2:8262207/140‑1 (MQ=255) aTAAACTTTCGTCGAATAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCAcc < 2:10040130/140‑1 (MQ=255) aTAAACTTTCGTCGAATAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCAcc < 1:2900104/140‑1 (MQ=255) cTTTCGTCGAATAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCAt < 1:177318/140‑1 (MQ=255) tcgtcgAATAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTaa > 1:2779793/1‑140 (MQ=255) tAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAgc > 1:5860545/1‑140 (MQ=255) aaaCGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCa < 1:7359146/140‑1 (MQ=255) cGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACCGAGAAATCATCACCAGCATTAAAATAAAGCCGCCAttt > 1:772195/1‑140 (MQ=255) cTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTcc < 2:6436407/140‑1 (MQ=255) tAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTccc < 1:3999017/140‑1 (MQ=255) ggTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGa > 1:716853/1‑140 (MQ=255) gTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGAc > 2:4907549/1‑140 (MQ=255) taaataaaATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTc > 1:4906431/1‑140 (MQ=255) aataaaattCCGATACCTTCCCACAGCGAATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGATAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCAATGACGCTCGc < 2:7694571/140‑1 (MQ=255) tcacagaCCGAGACCGTCCCACAGCGCATACCCTACCCCTAACGCGA‑TTATTTTAACGGCGAAAGAGAGAAATATATCCTCCAGAGAAATCATCACCAGCATGAACATAAAGCCGCCCTTTCCCTCACGGACGCTCGccc < 2:6696168/134‑1 (MQ=255) taaaataCCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGccc < 2:961868/140‑1 (MQ=255) taaaataCCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGccc < 1:559600/140‑1 (MQ=255) taaaataCCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGccc < 1:10644612/140‑1 (MQ=255) aaataCCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCAt > 2:4504611/1‑140 (MQ=255) aataCCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCAtt > 1:4536063/1‑140 (MQ=255) aataCCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCAtt > 2:9018300/1‑140 (MQ=255) aataCCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCAtt > 2:10269098/1‑140 (MQ=255) aataCCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCAtt > 1:3363140/1‑140 (MQ=255) aataCCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCAtt > 1:1578453/1‑140 (MQ=255) ccGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCAt > 2:5771624/1‑140 (MQ=255) aTACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAgccgcc > 1:9068366/1‑107 (MQ=255) aTACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGa > 1:6055332/1‑140 (MQ=255) aTACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGa < 2:7025661/140‑1 (MQ=255) aTACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGa > 1:4425677/1‑140 (MQ=255) ttCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCg > 2:3880102/1‑140 (MQ=255) tCCCACAGCGCATAAGCTCCGCCTAAGGCGA‑TTTTTTTAACGGCGACAGCGAGAAATATATACGACAGAGACCTCATCACCCGCATTAAAATACAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCAGTGACAGCgg > 2:8575650/1‑139 (MQ=255) tCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGt > 1:10226270/1‑140 (MQ=255) tCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCACCCATTTCATTGACAGCGt > 1:8639715/1‑140 (MQ=255) cccACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTa > 1:8300276/1‑140 (MQ=255) cccACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTa > 1:8515673/1‑140 (MQ=255) gcgcATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTa > 2:5085620/1‑140 (MQ=255) cgcATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGACATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCAGTGACAGCGTACCGGTaa > 1:2675410/1‑140 (MQ=255) cgcATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTaa > 1:4287760/1‑140 (MQ=255) cgcATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTaa > 1:2454344/1‑140 (MQ=255) cgcATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTaa < 2:3674543/140‑1 (MQ=255) cgcATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTaa > 1:9771648/1‑140 (MQ=255) cgcATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTaa > 1:11367081/1‑140 (MQ=255) cgcATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTaa > 2:714402/1‑140 (MQ=255) cgcATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATGTCATTGACAGCGTACCGGTaa > 2:11087982/1‑140 (MQ=255) cgcATAAGCTACGCCTAAGGCGA‑TTTTTATAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTaa > 2:6944084/1‑140 (MQ=255) cgcATAAGCTACGCCTAAGGCGA‑TATTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATGTCAATGACAGCGTCCCGGTaa > 2:1767933/1‑140 (MQ=255) gcATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACTCTCGCCCATTTCATTGACAGCGTACCGGTAAt > 1:10432043/1‑140 (MQ=255) cATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTAAtt > 2:2646464/1‑140 (MQ=255) cATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTAAtt > 1:11499958/1‑140 (MQ=255) cATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTAAtt > 2:1383098/1‑140 (MQ=255) cATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTAAtt > 2:1481285/1‑140 (MQ=255) aTAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTAAttt > 2:5891255/1‑140 (MQ=255) aTAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGGACCGGTAAttt > 1:4228681/1‑140 (MQ=255) tcaGCTACGCCTAAGGCGA‑CTTTTTGAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCCGCATTAAAATAAAGCCGCCAGTTCCCTCACTGACGCTCGCCCAGTTCATTGACAGCGTACCGGTAATTTc < 2:7640849/138‑1 (MQ=255) tAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTAATTTc > 1:4694604/1‑140 (MQ=255) aGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGTGTACCGGTAATTTCTg < 1:934200/140‑1 (MQ=255) aGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTAATTTCTg < 1:1847610/140‑1 (MQ=255) aGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTAATTTCTg < 1:1276024/140‑1 (MQ=255) aGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTAATTTCTg < 2:2666438/140‑1 (MQ=255) aCGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTAATTTCTGTAGc < 1:8032246/140‑1 (MQ=255) aCGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTAATTTCTGTAGc < 1:5138682/140‑1 (MQ=255) aCGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTAATTTCTGTAGc < 2:4697241/140‑1 (MQ=255) gCCTAATGCGA‑TTTTTTTAACGGCGAATGTGAGAAATATTTACGACAGAGAATTCATCACAAGCATTATAATAAAGCCGCCATTTCCCTCTCTGACGCTCGCCCATTTCAGTGAGAGCGTACATGTAATTTCTGTAGCaa > 2:4816670/1‑140 (MQ=255) gCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTAATTTCTGTAGCaa > 2:5314239/1‑140 (MQ=255) gCCTAAGGCGA‑TTTATTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTAATTTCTGTAGCaa < 1:10754873/140‑1 (MQ=255) aaGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTAATTTCTGTAGCAATAGc < 1:2339455/140‑1 (MQ=255) aGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTAATTTCTGTAGCAATAGcc > 2:807203/1‑140 (MQ=255) aGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTAATTTCTGTAGCAATAGcc < 2:10779121/140‑1 (MQ=255) gttttttttAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTAATTTCTGTAGCAATAGCCAGAc < 2:2001371/139‑1 (MQ=255) | AACACAATCCCGGCGACCAGGGTGGTTAACCCGGCAATTTTCATCAGCGATAAACTTTCGTCGAATAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGATTTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTAATTTCTGTAGCAATAGCCAGAC > NZ_CP025268/1678018‑1678295 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |