BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NZ_CP025268	674,649	+T	pseudogene (947/977 nt)	ybeQ ←	SEL1‑like repeat protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NZ_CP025268	674,649	1	.	T	98.4%	2621.6 / 23.2	700	pseudogene (947/977 nt)	ybeQ	SEL1‑like repeat protein
Reads supporting (aligned to +/- strand): ref base . (8/3); new base T (313/370); total (322/378)
Fisher's exact test for biased strand distribution p-value = 1.24e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 714 total aligned reads displayed.

TGGTCATGACCAGTTCCAGAGACGCCCGTTTGAGCCGTAATAGTCTGATTTCGCACAGCAATAAAGAGAATATGGGCCGAATGAAATTCCCCGGCCCTTGTTTTTATCTTTACAGTAAATCTTCAGTCTCACGAATTT‑C‑C‑GACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTCGAGAGCCTGTCGGAGATCGACAGGTCTTCCTTCTCCGTAGTGATACATAATGGCCAGGTTATACCAGGCAGTGGCGTCATTGCA  >  NZ_CP025268/674510‑674779

tgGTCATGACCAGTTCCAGAGACGCCCGTTTGAGCCGTAATAGTCTGATTTCGCACAGCAATAAAGAGAATATGGGCCGAATGAAATTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTT‑c‑c                                                                                                                                     <  2:10376481/140‑1 (MQ=255)

 ggTCATGACCAGTTCCAGAGACGACCGTTTGAGACGTAATAGTCTGATTTCGCACAGCAATCATGAGACTATGGGCCGAATGAACTTCCCCGGCGCTTGTTTTTATCTCTCCAGTAATGCTTCAGTCTCGCGAATGT‑c‑ct                                                                                                                                    >  2:10883416/1‑139 (MQ=255)

  gTCATGACCAGTTCCAGAGACGCCCGTTTGAGCCGTAATAGTCTGATTTCGCACAGCAATAAAGAGAATATGGGCCGAATGAAATTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTT‑c‑ctg                                                                                                                                   >  2:3287620/1‑138 (MQ=255)

  gTCATGACCAGTTCCAGAGACGCCCGTTTGAGCCGTAATAGTCTGATTTCGCACAGCAATAAAGAGAATATGGGCCGAATGAAATTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTT‑c‑ctg                                                                                                                                   >  1:11616794/1‑138 (MQ=255)

      tGACCAGTTCCAGAGACGCCCGTTTGAGCCGTAATAGTCTGATTTCGCACAGCAATAAAGAGAATATGGGCCGAATGAAATTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTT‑C‑CTGACTg                                                                                                                               >  2:5027498/1‑140 (MQ=255)

      tGACCAGTTCCAGAGACGCCCGTTTGAGCCGTAATAGTCTGATTTCGCACAGCAATAAAGAGAATATGGGCCGAATGAAATTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTT‑C‑CTGACTg                                                                                                                               >  1:1873594/1‑140 (MQ=255)

        aCCAGTTCCAGAGACGCCCGTTTGAGCCGTAATAGTCTGATTTCGCACAGCAATAAAGAGAATATGGGCCGAATGAAATTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTT‑C‑CTgactgac                                                                                                                             <  2:10000812/140‑1 (MQ=255)

            gTTCCAGAGACGCCCGTTTGAGCCGTAATAGTCTGATTTCGCACAGCAATAAAGAGAATATGGGCCGAATGAAATTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTT‑C‑CTGACTGACAtct                                                                                                                         >  1:7534933/1‑140 (MQ=255)

             ttCCAGAGACGCCCGTTTGAGCCGTAATAGTCTGATTTCGCACAGCAATAAAGAGAATATGGGCCGAATGAAATTCCCCGGCCCTGGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGACTTT‑C‑CTGACTGACAtctc                                                                                                                        >  2:1344881/1‑140 (MQ=255)

                cAGAGACGCCCGTTTGAGCCGTAATAGTCTGATTTCGCACAGCAATAAAGAGAATATGGGCCGAATGAAATTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTT‑C‑CTGACTGACATCTCTgg                                                                                                                     <  1:11481688/140‑1 (MQ=255)

                  gagaCGCCCGTTTGAGCCGTAATAGTCTGATTTCGCACAGCAATAAAGAGAATATGGGCCGAATGAAATTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTT‑C‑CTGACTGACATCTCTGGtt                                                                                                                   <  1:5848388/140‑1 (MQ=255)

                      cGCCCGTTTGAGCCGTAATAGTCTGATTTCGCACAGCAATAAAGAGAATATGGGCCGAATGAAATTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTT‑C‑CTGACTGACATCTCTGGTTCCgg                                                                                                               <  1:8718499/140‑1 (MQ=255)

                      cGCCCGTTTGAGCCGTAATAGTCTGATTTCGCACAGCAATAAAGAGAATATGGGCCGAATGAAATTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTT‑C‑CTGACTGACATCTCTGGTTCCgg                                                                                                               <  2:2087914/140‑1 (MQ=255)

                       gCCCGTTTGAGCCGTAATAGTCTGATTTCGCACAGCAATAAAGAGAATATGGGCCGAATGACATTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAAGTT‑C‑CTGACTGACATCTCTGGTTCCGGa                                                                                                              >  2:3558194/1‑140 (MQ=255)

                       gCCCGTTTGAGCCGTAATAGTCTGATTTCGCACAGCAATAAAGAGAATATGGGCCGAATGAAATTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTT‑C‑CTGACTGACATCTCTGGTTCCGGa                                                                                                              >  1:4488345/1‑140 (MQ=255)

                       gCCCGTTTGAGCCGTAATAGTCTGATTTCGCACAGCAATAAAGAGAATATGGGCCGAATGAAATTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTT‑C‑CTGACTGACATCTCTGGTTCCGGa                                                                                                              >  1:2875334/1‑140 (MQ=255)

                       gCCCGTTTGAGCCGTAATAGTCTGATTTCGCACAGCAATAAAGAGAATATGGGCCGAATGAAATTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTT‑C‑CTGACTGACATCTCTGGTTCCGGa                                                                                                              >  1:1413260/1‑140 (MQ=255)

                       gCCCGTTTGAGCCGTAATAGTCTGATTTCGCACAGCAATAAAGAGAATATGGGCCGAATGAAATTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTT‑C‑CTGACTGACATCTCTGGTTCCGGa                                                                                                              >  1:10023109/1‑140 (MQ=255)

                       gCCCGTTTGAGCCGTAATAGTCTGATTTCGCACAGCAATAAAGAGAATATGGGCCGAATGAAAGTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTT‑C‑CTGACTGACATCTCTGGTTCCGGa                                                                                                              <  2:10201039/140‑1 (MQ=255)

                       gCCCGGTTGAGCCGTAATAGTCTGATTTCGCACAGCAATAAAGAGAATATGGGCCGAATGAAATTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTT‑C‑CTGACTGACATCTCTGGTTCCGGa                                                                                                              >  1:263464/1‑140 (MQ=255)

                        cccGTTTGAGCCGTAATAGTCTGATTTCGCACAGCAATAAAGAGAATATGGGCCGAATGAAATTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTT‑C‑CTGACTGACATCTCTGGTTCCGGAt                                                                                                             >  1:7696615/1‑140 (MQ=255)

                          cGTTTGAGCCGTAATAGTCTGATTTCGCACAGCAATAAAGAGAATATGGGCCGAATGAAATTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTT‑C‑CTGACTGACATCTCTGGTTCCGGATGa                                                                                                           <  2:287315/140‑1 (MQ=255)

                            tttGAGCCGTAATAGTCTGATTTCGCACAGCAATAAAGAGAATATGGGCCGAATGAAATTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTT‑C‑CTGACTGACATCTCTGGTTCCGGATGACt                                                                                                         <  2:6751526/140‑1 (MQ=255)

                               gAGCCGTAATAGTCTGATTTCGCACAGCAATAAAGAGAATATGGGCCGAATGAAATTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTT‑C‑CTGACTGACATCTCTGGTTCCGGATGACTGaa                                                                                                      <  2:4068334/140‑1 (MQ=255)

                               gAGCCGTAATAGTCTGATTTCGCACAGCAATAAAGAGAATATGGGCCGAATGAAATTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTT‑C‑CTGACTGACATCTCTGGTTCCGGATGACTGaa                                                                                                      <  2:7372471/140‑1 (MQ=255)

                               gAGCCGTAATAGTCTGATTTCGCACAGCAATAAAGAGAATATGGGCCGAATGAAATTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTT‑C‑CTGACTGACATCTCTGGTTCCGGATGACTGaa                                                                                                      <  1:10117931/140‑1 (MQ=255)

                                  ccGTAATAGTCTGATTTCGCACAGCAATAAAGAGAATATGGGCCGAATGAAATTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTT‑C‑CTGACTGACATCTCTGGTTCCGGATGTCTGAACtt                                                                                                   >  1:8238701/1‑140 (MQ=255)

                                     tAATAGTCTGATTTCGCACAGCAATAAAGAGAATATGGGCCGAATGAAATTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTT‑C‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTAc                                                                                                >  1:9730494/1‑140 (MQ=255)

                                      aaTAGTCTGATTTCGCACAGCAATAAAGAGAATATGGGCCGAATGAAATTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTT‑C‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACg                                                                                               >  1:7055890/1‑140 (MQ=255)

                                           tCTGATTTCGCACAGCAATAAAGAGAATATGGGCCGAATGAAATTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTT‑C‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACa                                                                                          <  2:1552830/140‑1 (MQ=255)

                                           tCTGATTTCGCACAGCAATAAAGAGAATATGGGCCGAATGAAATTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTT‑C‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACa                                                                                          >  1:558252/1‑140 (MQ=255)

                                             tGATTTCGCACAGCAATAAAGAGAATATGGGCCGAATGAAATTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTT‑C‑CTgactgac                                                                                                                             >  1:8558098/1‑103 (MQ=255)

                                             tGATTTCGCACAGCAATAAAGAGAATATGGGCCGAATGAAATTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTT‑C‑CTgactgac                                                                                                                             <  2:1216083/103‑1 (MQ=255)

                                             tGATTTCGCACAGCAATAAAGAGAATATGGGCCGAATGAAATTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTT‑C‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAgg                                                                                        >  1:3062672/1‑140 (MQ=255)

                                               aTTTCGCACAGCAATAAAGAGAATATGGGCCGAATGAAATTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTT‑C‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATCCAGGTc                                                                                      >  1:9319187/1‑140 (MQ=255)

                                               aTTTCGCACAGCAATAAAGAGAATATGGGCCGAATGAAATTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTT‑C‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTc                                                                                      >  1:10548117/1‑140 (MQ=255)

                                               aTTTCGCACAGCAATAAAGAGAATATGGGCCGAATGAAATTCCCCGGCCCTTGTTTTCATCTCTACAGTAAATCTTCAGTCTCACGAATTT‑C‑CTGACTGACATCTCTGGTTCCGGATGACTGaa                                                                                                      >  2:11404857/1‑124 (MQ=255)

                                                   cGCACAGCAATAAAGAGAATATGGGCCGAATGAAATTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTT‑C‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTCgaga                                                                                  <  1:5129467/140‑1 (MQ=255)

                                                     cacaGCAATAAAGAGAATATGGGCCGAATGAAATTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTT‑C‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTCGAGAGc                                                                                <  2:456323/140‑1 (MQ=255)

                                                     cacaGCAATAAAGAGAATATGGGCCGAATGAAATTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTT‑C‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTCGAGAGc                                                                                >  1:6850921/1‑140 (MQ=255)

                                                     cacaGCAATAAAGAGAATATGGGCCGAATGAAATTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTT‑C‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTCGAGAGc                                                                                <  2:5968097/140‑1 (MQ=255)

                                                     cacaGCAATAAAGAGAATATGGGCCGAATGAAATTCCCCGGCCCTTGTTTTTATCTCAACAGTAAATCTTCAGTCTCACGAATTT‑CAT‑GACTGACATATCTGGTTACGGATGACTGAACTTTACGATACAGGTCGAGAGc                                                                                >  1:486732/1‑140 (MQ=255)

                                                      acaGCAATAAAGAGAATATGGGCCGAATGAAATTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTT‑C‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTCGAGAGcc                                                                               <  1:10877515/140‑1 (MQ=255)

                                                         gCAATAAAGAGAATATGGGCCGAATGAAATTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTT‑C‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTCGAGAGCCTGt                                                                            <  1:9087306/140‑1 (MQ=255)

                                                              aaaGAGAATATGGGCCGAATGAAATTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTT‑C‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTCGAGAGCCTGTCGgag                                                                       <  1:11234865/140‑1 (MQ=255)

                                                                  agaATATGGGCCGAATGAAATTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTT‑C‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTCGAGAGCCTGTCGGAGATCg                                                                   >  2:8319596/1‑140 (MQ=255)

                                                                    aaTATGGGCCGAATGAAATTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTT‑C‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTCGAGAGCCTGTCGGAGATCGAc                                                                 >  2:3149336/1‑140 (MQ=255)

                                                                    aaTATGGGCCGAATGAAATTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTT‑C‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTCGAGAGCCTGTCGGAGATCGAc                                                                 >  2:437643/1‑140 (MQ=255)

                                                                    aaTATGGGCCGAATGAAATTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTT‑C‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTCGAGAGCCTGTCGGAGATCGAc                                                                 >  1:403771/1‑140 (MQ=255)

                                                                     atatGGGCCGAATGAAATTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTT‑C‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTCGAGAGCCTGTCGGAGATCGACa                                                                <  1:1568741/140‑1 (MQ=255)

                                                                      tatGGGCCGAATGAAATTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTT‑C‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTCGAGAGCCTGTCGGAGATCGACAg                                                               >  2:10559876/1‑140 (MQ=255)

                                                                       atGGGCCGAATGAAATTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTT‑C‑CTGACTGACATCTCTGGGTCCGGATGACTGAACTTTACGAGACAGGTCGAGAGCCTGTCGGAGATCGACAgg                                                              >  1:7932881/1‑140 (MQ=255)

                                                                              gAATGAAATTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTT‑C‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTCGAGAGCCTGTCGGAGATCGACa                                                                <  1:2455464/131‑1 (MQ=255)

                                                                              gAATGAAATTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTT‑C‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTCGAGAGCCTGTCGGAGATCGACa                                                                >  2:2455464/1‑131 (MQ=255)

                                                                              gAATGAAATTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTT‑C‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTCGAGAGCCTGTCGGAGATCGACAGGTcttcct                                                       >  1:3592412/1‑140 (MQ=255)

                                                                              gAATGAAATTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTT‑C‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTCGAGAGCCTGTCGGAGATCGACAGGTcttcct                                                       >  2:2664554/1‑140 (MQ=255)

                                                                              gAATGAAATTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTT‑C‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTCGAGAGCCTGTCGGAGATCGACAGGTcttcct                                                       >  1:8064876/1‑140 (MQ=255)

                                                                              gAATGAAATTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGCCTCACGAATTT‑C‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTCGAGAGCCTGTCGGAGATCGACAGGTcttcct                                                       >  1:5450485/1‑140 (MQ=255)

                                                                               aaTGAAATTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTT‑C‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTCGAGAGCCTGTCGGAGATCGACAGGTcttcctt                                                      >  1:6554353/1‑140 (MQ=255)

                                                                               aaTGAAATTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTT‑C‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTCGAGAGCCTGTCGGAGATCGACAGGTcttcctt                                                      <  2:3821409/140‑1 (MQ=255)

                                                                               aaTGAAATTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTT‑C‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTCGAGAGCCTGTCGGAGATCGACAGGTcttcctt                                                      >  2:9359452/1‑140 (MQ=255)

                                                                                  gAAATTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTT‑C‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTCGAGAGCCTGTCGGAGATCGACAGGTCTTCCTtctc                                                   <  2:3906348/140‑1 (MQ=255)

                                                                                    aagtCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTT‑C‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTCGAGAGCCTGTCGGAGATCGACAGGTCTTCCTTCTCCg                                                 <  1:3308474/137‑1 (MQ=255)

                                                                                    aagtCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTT‑C‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTCGAGAGCCTGTCGGAGATCGACAGGTCTTCCTTCTCCg                                                 <  2:1938352/137‑1 (MQ=255)

                                                                                         cccGGCCCTTGTTTTTATCTCAACAGTAAATCTTCAGTCTCACGAATTT‑C‑CTGACTGACATCTCTGGTTCCGGATGACTGTACTTTACGATACAGGTCGAGAGCCTGTCGGAGATCGACAGGTATTCCTTCTCCGTAGTg                                            >  2:8902381/1‑140 (MQ=255)

                                                                                          ccGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTT‑C‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTCGAGAGCCTGTCGGAGATCGACAGGTCTTCCTTCTCCGTAGTGa                                           <  2:9520166/140‑1 (MQ=255)

                                                                                           cGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGATTTT‑C‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTCGAGAGCCTGTCGGAGATCGACAGGTCTTCCTTCTCCGTAGTGAt                                          <  1:2093864/140‑1 (MQ=255)

                                                                                           cGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTT‑C‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTCGAGAGCCTGTCGGAGATCGACAGGTCTTCCTTCTCCGTAGTGAt                                          <  2:8568853/140‑1 (MQ=255)

                                                                                           cGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTT‑C‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTCGAGAGCCTGTCGGAGATCGACAGGTCTTCCTTCTCCGTAGTGAt                                          >  1:5960969/1‑140 (MQ=255)

                                                                                             gCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTT‑C‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTCGAGAGCCTGTCGGAGATCGACAGGTCTTCCTTCTCCGTAGTGATAc                                        >  1:1060816/1‑140 (MQ=255)

                                                                                              cccTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTT‑C‑CTGACTGACATCTCTGGTTCCGGATGACGGAACTTTACGATACAGGTCGAGAGCCTGTCGGAGATCGACAGGTCTTCCTTCTCCGTAGTGATACa                                       >  1:4675842/1‑140 (MQ=255)

                                                                                                cTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTT‑C‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTCGAGAGCCTGTCGGAGATCGACAGGTCTTCCTTCTCCGTAGTGATACATa                                     <  1:10746034/140‑1 (MQ=255)

                                                                                                cTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTT‑C‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTCGAGAGCCTGTCGGAGATCGACAGGTCTTCCTTCTCCGTAGTGATACATa                                     <  2:7988697/140‑1 (MQ=255)

                                                                                                  tGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTT‑C‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTa                                                                                                 <  1:4166636/78‑1 (MQ=255)

                                                                                                  tGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTT‑C‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTCGAGAGCCTGTCGGAGATCGACAGGTCTTCCTTCTCCGTAGTGATACATAAt                                   >  1:6397390/1‑140 (MQ=255)

                                                                                                    tttttATCTCTACAGTAACTCTTCAGTCTCACGAATTT‑C‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTCGAGAGCCTGTCGGAGATCGACAGGTCTTCCTTCTCCGTAGTGATACATAATgg                                 <  2:6446895/140‑1 (MQ=255)

                                                                                                     ttttATCTCTACAGTAAATCTTCAGTCTCACGAATTT‑C‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTCGAGAGCCTGTCGGAGATCGACGGGTCTTCCTTCTCCGTAGTGATACATAATGGc                                <  2:5420123/140‑1 (MQ=255)

                                                                                                     ttttATCTCTACAGTAAATCTTCAGTCTCACGAATTT‑C‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTCGAGAGCCTGTCGGAGATCGACAGGTCTTCCTTCTCCGTAGTGATACATAATGGc                                <  1:4109254/140‑1 (MQ=255)

                                                                                                     ttttATCTCTACAGTAAATCTTCAGTCTCACGAATTT‑C‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTCGAGAGCCTGTCGGAGATCGACAGGTCTTCCTTCTCCGTAGTGATACATAATGGc                                <  1:7263349/140‑1 (MQ=255)

                                                                                                     ttttATCTCTACAGTAAATCTTCAGTCTCACGAATTT‑C‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTCGAGAGCCTGTCGGAGATCGACAGGTCTTCCTTCTCCGTAGTGATACATAATGGc                                <  1:229101/140‑1 (MQ=255)

                                                                                                      tttATCTCTACAGTAAATCTTCAGTCTCACGAATTT‑C‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTCGAGAGCCTGTCGGAGATCGACAGGTCTTCCTTCTCCGTAGTGATACATAATGGcc                               <  2:486732/140‑1 (MQ=255)

                                                                                                        tATCTCTACAGTAAATCTTCAGTCTCACGAATTT‑C‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTCGAGAGCCTGTCGGAGATCGACAGGTCTTCCTTCTCCGTAGTGATACATAATGGCCAg                             >  2:5241520/1‑140 (MQ=255)

                                                                                                        tATCTCTACAGTAAATCTTCAGTCTCACGAATTT‑C‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTCGAGAGCCTGTCGGAGATCGACAGGTCTTCCTTCTCCGTAGTGATACATAATGGCCAg                             >  2:7026591/1‑140 (MQ=255)

                                                                                                         aTCTCTACAGTAAATCTTCAGTCTCACGAATTT‑C‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTCGAGAGCCTGTCGGAGATCGACAGGTCTTCCTTCTCCGTAGTGATACATAATGGCCAgg                            <  2:2304177/140‑1 (MQ=255)

                                                                                                         aTCTCTACAGTAAATCTTCAGTCTCACGAATTT‑C‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTCGAGAGCCTGTCGGAGATCGACAGGTCTTCCTTCTCCGTAGTGATACATAATGGCCAgg                            <  2:9611938/140‑1 (MQ=255)

                                                                                                         aTCTCTACAGTAAATCTTCAGTCTCACGAATTT‑C‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTCGAGAGCCTGTCGGAGATCGACAGGTCTTCCTTCTCCGTAGTGATACATAATGGCCAgg                            <  2:9157721/140‑1 (MQ=255)

                                                                                                         aTCTCTACAGTAAATCTTCAGTCTCACGAATTT‑C‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTCGAGAGCCTGTCGGAGATCGACAGGTCTTCCTTCTCCGTAGTGATACATAATGGCCAgg                            <  1:6282422/140‑1 (MQ=255)

                                                                                                         aTCTCTACAGTAAATCTTCAGTCTCACGAATTT‑C‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTCGAGAGCCTGTCGGAGATCGACAGGTCTTCCTTCTCCGTAGTGATACATAATGGCCAgg                            >  1:1257900/1‑140 (MQ=255)

                                                                                                             ctACAGTAAATCTTCAGTCTCACGAATTT‑C‑CTGACTGACATCTCTGGTTCCGGATGACTGaa                                                                                                      >  1:3838932/2‑62 (MQ=255)

                                                                                                              tACAGTAAATCTTCAGTCTCACGAATTT‑C‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTCGAGAGCCTGTCGGAGATCGACAGGTCTTCCTTCTCCGTATTGATACATAATGGCCAGGTtata                       >  1:5022123/1‑140 (MQ=255)

                                                                                                              tACAGTAAATCTTCAGTCTCACGAATTT‑C‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTCGAGAGCCTGTCGGAGATCGACAGGTCTTCCTTCTCCGTAGTGATACATAATGGCCAGGTtata                       <  2:6280234/140‑1 (MQ=255)

                                                                                                                   tAAATCTTCAGTCTCACGAATTT‑C‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTCGAGAGCCTGTCGGAGATCGACAGGTCTTCCTTCTCCGTAGTGATACATAATGGCCAGGTTATACCAgg                  <  1:1033424/140‑1 (MQ=255)

                                                                                                                    aaaTCTTCAGTCTCACGAATTT‑C‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTCGAGAGCCTGTCGGAGATCGACAGGTCTTCCTTCTCCGTAGTGATACATAATGGCCAGGTTATACCAGGc                 <  2:11208177/140‑1 (MQ=255)

                                                                                                                      aTCTTCAGTCTCACGAATTT‑C‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTCGAGAGCCTGTCGGAGATCGACAGGTCTTCCTTCTCCGTAGTGATACATAATGGCCAGGTTATACCAGGCAg               <  1:6090516/140‑1 (MQ=255)

                                                                                                                        cTTCAGTCTCACGAATTTCC‑C‑GACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTCGAGAGCCTGTCGGAGATCGACAGGTCTTCCTTCTCCGTAGTGATACATAATGGCCAGGTTATACCAGGCAGTg             >  1:670146/1‑140 (MQ=255)

                                                                                                                        cTTCAGTCTCACGAATTT‑C‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTCGAGAGCCTGTCGGAGATCGACAGGTCTTCCTTCTCCGTAGTGATACATAATGGCCAGGTTATACCAGGCAGTg             >  1:3219242/1‑140 (MQ=255)

                                                                                                                        cTTCAGTCTCACGAATTT‑C‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTCGAGAGCCTGTCGGAGATCGACAGGTCTTCCTTCTCCGTAGTGATACATAATGGCCAGGTTATACCAGGCAGTg             >  1:9484276/1‑140 (MQ=255)

                                                                                                                             gTCTCACGAATTT‑CAT‑GACTGACATCTCTGGTTCCGGATGACTGAACTTTTCGATACAGGTCGAGAGCCTGTCGGAGATCGACCGGTCTTCCTTCTCCGTAGTGATACATAATGGGCAGGTTATACCAGGCAGTGGCGTc        >  2:6594259/1‑140 (MQ=255)

                                                                                                                              tctcACGAATTT‑C‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTCGAGAGCTTGTCGGAGATCGACAGGTCTTCCTTCTCCGTAGTGATACATa                                     <  2:1757531/110‑1 (MQ=255)

                                                                                                                                  aCGAATTT‑C‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTCGAGAGCCTGTCGGAGATCGACAGGTCTTCCTTCTCCGTAGTGATACATAATGGCCCGGTGATACCAGGCAGTGGCGGCATTGc   >  2:5698355/1‑140 (MQ=255)

TGGTCATGACCAGTTCCAGAGACGCCCGTTTGAGCCGTAATAGTCTGATTTCGCACAGCAATAAAGAGAATATGGGCCGAATGAAATTCCCCGGCCCTTGTTTTTATCTTTACAGTAAATCTTCAGTCTCACGAATTT‑C‑C‑GACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTCGAGAGCCTGTCGGAGATCGACAGGTCTTCCTTCTCCGTAGTGATACATAATGGCCAGGTTATACCAGGCAGTGGCGTCATTGCA  >  NZ_CP025268/674510‑674779

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`