| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP025268 | 1,175,450 | +G | pseudogene (483/632 nt) | comR ← | TetR family copper‑responsive transcriptional repressor ComR |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP025268 | 1,175,448 | 1 | . | G | 99.5% | 2093.7 / 0.9 | 600 | pseudogene (485/632 nt) | comR | TetR family copper‑responsive transcriptional repressor ComR |
| Reads supporting (aligned to +/- strand): ref base . (0/3); new base G (264/333); total (264/336) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.60e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 615 total aligned reads displayed.
CAGTTCGGGCCATAAACGCAAAGTCGTTCCGGCAATCTGCATCAGTTTTTCCAGCGATGCACCTTCGCGTGCGCTGATCGACATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGC‑GG‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCTGAATCTGGGGAGAGGGTGGTGCAGTTGTTGATCATGAAG > NZ_CP025268/1175310‑1175582 | aTAAACGCAAAGTCGTTCCGGCAATCTGCATCAGTTTTTCCAGCGATGCACCTTCGCGTGCGCTGATCGACATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGGG‑ATTTCCCcg < 1:527414/140‑1 (MQ=255) aaaCGCAAAGTCGTTCCGGCAATCTGCATCAGTTTTTCCAGCGATGCACCTTCGCGTGCGCTGATCGACATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGGG‑ATTTCCCcgcg > 1:7488890/1‑140 (MQ=255) aaaCGCAAAGTCGTTCCGGCAATCTGCATCAGTTTTTCCAGCGATGCACCTTCGCGTGCGCTGATCGACATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGGG‑ATTTCCCcgcg < 1:8794887/140‑1 (MQ=255) aaaCGCAAAGTCGTTCCGGCAATCTGCATCAGTTTTTCCAGCGATGCACCTTCGCGTGCGCTGATCGACATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGGG‑ATTTCCCcgcg < 2:1102490/140‑1 (MQ=255) cAAAGTCGTTCCGGCAATCTGCATCAGTTTTTCCAGCGATGCACCTTCGCGTGCGCTGATCGACATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGGG‑ATTTCCCCGCGCGCtt > 2:5993124/1‑140 (MQ=255) cGTTCCGGCAATCTGCATCAGTTTTTCCAGCGATGCACCTTCGCGTGCGCTGATCGACATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGGG‑ATTTCCCCGCGCGCTTGTCGtt < 1:4330676/140‑1 (MQ=255) cGTTCCGGCAATCTGCATCAGTTTTTCCAGCGATGCACCTTCGCGTGCGCTGATCGACATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGGG‑ATTTCCCCGCGCGCTTGTCGtt < 1:4811931/140‑1 (MQ=255) cGTTCCGGCAATCTGCATCAGTTTTTCCAGCGATGCACCTTCGCGTGAGCTGATCGACATCCCCTGAAGAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGGG‑ATTTCCCCGCGCGCTTGTCGtt < 2:8536032/140‑1 (MQ=255) cAATCTGCATCAGTTTTTCCAGCGATGCACCTTCGCGTGCGCTGATCGACATCCCCTGAATAATCCAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGGG‑ATTTCCCCGCGCGCTTGTCGTTGACATaaa < 1:2970371/140‑1 (MQ=255) cAATCTGCATCAGTTTTTCCAGCGATGCACCTTCGCGTGCGCTGATCGACATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGGG‑ATTTCCCCGCGCGCTGGTCGTTGACATaaa < 1:9092411/140‑1 (MQ=255) aTCTGCATCAGAATTTCCAGCGATGCACCTTCGCGTGCGCTGATCGACATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGGG‑ATTTCCCCGCGCGCTTGTCGTTGACATaaaaa < 1:8409536/140‑1 (MQ=255) tCTGCATCAGTTTTTCCAGCGATGCACCTTCGCGTGCGCTGATCGACATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGGG‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAAc > 2:5437439/1‑140 (MQ=255) tGCATCAGTTTTTCCAGCGATGCACCTTCGCGTGCGCTGATCGACATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGGG‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAActg < 2:11347385/140‑1 (MQ=255) cATCAGTTTTTCCAGCGATGCACCTTCGCGTGCGCTGATCGACATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGGG‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAActgct > 2:8087602/1‑140 (MQ=255) aTCAGTTTTTCCAGCGATGCACCTTCGCGTGCGCTGATCGACATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGGG‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAActgctg > 1:3699655/1‑140 (MQ=255) cAGTTTTTCCAGCGATGCACCTTCGCGTGCGCTGATCGACATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGGG‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCa < 1:5810431/140‑1 (MQ=255) tCCAGCGATGCACCTTCGCGTGCGCTGATCGACATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGGG‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTgcg < 2:3935508/140‑1 (MQ=255) aGCGATGCACCTTCGCGTGCGCTGATCGACATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATTTGTCACGTCACAGTGGGGCGGG‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGctc < 2:9526286/140‑1 (MQ=255) aGCGATGCACCTTCGCGTGCGCTGATCGACATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGGG‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGctc < 1:2749898/140‑1 (MQ=255) aGCGATGCACCTTCGCGTGCGCTGATCGACATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGGG‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGctc < 1:3368614/140‑1 (MQ=255) gATGCACCTTCGCGTGCGCTGATCGACATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGGG‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTg > 1:60215/1‑140 (MQ=255) gATGCACCTTCGCGTGCGCTGATCGACATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGGG‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTg > 1:1888587/1‑140 (MQ=255) gATGCACCTTCGCGTGCGCTGATCGACATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGGG‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTg > 1:9463141/1‑140 (MQ=255) tGCACCTTCGCGTGCGCTGATCGACATCCCCTGAATAAGACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGGG‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCa < 2:3585900/140‑1 (MQ=255) ccTTCGCGTGCGCTGATCGACATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGGG‑ATGTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGc < 2:9863905/140‑1 (MQ=255) tCGCGTGCGCTGATCGACATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGGG‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGGGCTCTTGCATCGCATg > 2:10434392/1‑140 (MQ=255) tCGCGTGCGCTGATCGACATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGGG‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATg > 1:1798928/1‑140 (MQ=255) cgcgTGCGCTGATCGACATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGGG‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATgg > 1:10140934/1‑140 (MQ=255) cgTGCGCTGATCGACATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGGG‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCg < 2:2175337/140‑1 (MQ=255) cgTGCGCTGATCGACATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTAACAGTGGGGCGGG‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCg < 1:6891261/140‑1 (MQ=255) cgcTGATCGACATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGGG‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGAt > 2:3754725/1‑140 (MQ=255) cgcTGATCGACATCCCCTGAATAATACAATTAAGGAATTCTGACAGTTGTGTCACGTCACAGTGGGGCGGG‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGAt > 2:5092062/1‑140 (MQ=255) gcTGATCGACATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGGG‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGAtt > 1:11282465/1‑140 (MQ=255) cTGATCGACATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGGG‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGAttt < 1:1535943/140‑1 (MQ=255) gATCGACATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGGG‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCa < 1:1030738/140‑1 (MQ=255) aTCGACATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGGG‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCaa > 1:9590647/1‑140 (MQ=255) aTCGACATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGGG‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCaa > 1:1042544/1‑140 (MQ=255) cGACATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGGG‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACg < 2:4913416/140‑1 (MQ=255) cATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGGG‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTAt > 1:235644/1‑140 (MQ=255) ccTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGGG‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCg > 2:3187716/1‑140 (MQ=255) ccTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGGG‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCg > 2:6835605/1‑140 (MQ=255) tGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGGG‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGat > 1:7122016/1‑140 (MQ=255) tGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGGG‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGat > 2:9179309/1‑140 (MQ=255) tGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGGG‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGat < 2:3352758/140‑1 (MQ=255) agAATAATACAATTAAGGAATTCTGCCAGATGTGACACGTCACAGTGGGGCGGG‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGat < 1:922134/139‑1 (MQ=255) gAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGGG‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGata > 2:10613009/1‑140 (MQ=255) ataCAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGGG‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTcc < 1:1660159/140‑1 (MQ=255) ataCAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGGG‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTcc < 1:9965765/140‑1 (MQ=255) taCAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGGG‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCt > 2:8361519/1‑140 (MQ=255) taCAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGGG‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCt > 1:6804730/1‑140 (MQ=255) taCAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGGG‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCt > 2:10218441/1‑140 (MQ=255) taCAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGGG‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCt > 1:383501/1‑140 (MQ=255) taCAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGGG‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCt > 1:2185911/1‑140 (MQ=255) ttAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGGG‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCTGAATc > 1:7540201/1‑140 (MQ=255) ttAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGGG‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCTGAATc > 2:7523277/1‑140 (MQ=255) ttAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGGG‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCTGAATc < 2:9022429/140‑1 (MQ=255) ttAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGGG‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCTGAATc > 1:2528134/1‑140 (MQ=255) tAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGGG‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCTGAATCt < 1:4649822/140‑1 (MQ=255) tAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGGG‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCTGAATCt < 2:7893964/140‑1 (MQ=255) tAAGGAATTCTGCCACAGGTGTCACGTCACAGTGGGGCGGG‑ATTTCCCCGCGCGCGTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCTGAATCt < 2:6233229/140‑1 (MQ=255) aaGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGGG‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCTGAATCTg > 1:1163214/1‑140 (MQ=255) aGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGGG‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCTGAATCTgg > 1:10003/1‑140 (MQ=255) acttCTGCCAGAGGGGTCACGTCACAGTGGGTCGGG‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCGTGCATCGCATGGCGAGATTTCAACGTATTGGCGATATCTCCTGAATCTGGGga < 2:10836718/138‑1 (MQ=255) aaTTCTGCCAGATGTGTCACGTCACAGTGGGGCGGG‑ATTTCCCCGCGCGCTTGTCGTTGTCATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACTTATTGGCGATATCTCCTGAATCTGGGga < 2:4545859/140‑1 (MQ=255) aaTTCTGCCAGATGTGTCACGTCACAGTGGGGCGGG‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCTGAATCTGGGga < 2:258614/140‑1 (MQ=255) aTTCTGCCAGATGTGTCACGTCACAGTGGGGCGGG‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCTGAATCTGGGgag > 1:10691770/1‑140 (MQ=255) ttCTGCCAGATGTGTCACGTCACAGTGGGGCGGG‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCTTCGTATTGGCGATATCTCCTGAATCGGGGgagc > 2:8747497/1‑139 (MQ=255) ttCTGCCAGATGTGTCACGTCACAGTGGGGCGGG‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCTGACTCTGGGgaga > 2:7759008/1‑140 (MQ=255) ttCTGCCAGATGTGTCACGTCACAGTGGGGCGGG‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCTGAATCTGGGgaga < 1:10885980/140‑1 (MQ=255) ttCTGCCAGATGTGTCACGTCACAGTGGGGCGGG‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCTGAATCTGGGgaga < 2:1328359/140‑1 (MQ=255) ttCTGCCAGATGTGTCACGTCACAGTGGGGCGGG‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCTGAATCTGGGgaga > 2:4366502/1‑140 (MQ=255) ttCTGCCAGATGTGTCACGTCACAGTGGGGCGGG‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCTGAATCTGGGgaga > 1:9810820/1‑140 (MQ=255) tGCCAGATGTGTCACGTCACAGTGGGGCGGG‑ATTTCCCCGCGCGCTTGTCGTTGACATAAACACTGCTGCACAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCTGAATCTGGGGAGAggg < 2:1545434/140‑1 (MQ=255) tGCCAGATGTGTCACGTCACAGTGGGGCGGG‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCTGAATCTGGGGAGAggg < 1:6258387/140‑1 (MQ=255) gCCAGATGTGTCACGTCACAGTGGGGCGGG‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCTGAATCTGGGGAGAGggt < 2:967686/140‑1 (MQ=255) gATGTGTCACGTCACAGTGGGGCGGG‑ATTTCCCCGCGCGCTTGTCGTTGACATTAAAACTGCTGCAAAGTGCGCTCTTTCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCTGAATCTGGGGAGAGGgtggtg < 2:7030080/140‑1 (MQ=255) gATGTGTCACGTCACAGTGGGGCGGG‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCTGAATCTGGGGAGAGGgtggtg < 1:3959717/140‑1 (MQ=255) gATGTGTCACGTCACAGTGGGGCGGG‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCTGAATCTGGGGAGAGGgtggtg < 1:8305513/140‑1 (MQ=255) gATGTGTCACGTCACAGTGGGGCGGG‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCTGAATCTGGGGAGAGGgtggtg < 1:5517295/140‑1 (MQ=255) gATGTGTCACGTCACAGTGGGGCGGG‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCTGAATCTGGGGAGAGGgtggtg < 1:1403772/140‑1 (MQ=255) gATGTGTCACGTCACAGTGGGGCGGG‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCTGAATCTGGGGAGAGGgtggtg < 2:5754471/140‑1 (MQ=255) gATGTGTCACGTCACAGTGGGGCGGG‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCTGAATCTGGGGAGAGGgtggtg < 1:5047846/140‑1 (MQ=255) gATGTGTCACGTCACAGTGGGGCGGG‑ATGTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCTGAATCTGGGGAGAGGgtggtg < 2:9378241/140‑1 (MQ=255) gATGTGTCACGTCACAGTGGGGCGGG‑AGTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCTGAATCTGGGGAGAGGgtggtg < 2:11609578/140‑1 (MQ=255) tgtgTCACGTCACAGTGGGGCGGG‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCTGAATCTGGGGAGAGGGTGGTGCa > 1:6597901/1‑140 (MQ=255) gtgtCACGTCACAGTGGGGCGGG‑ATTTCCCCGCGCGCGTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCTGAATCTGGGGAGAGGGTGGTGCAg < 1:3537412/140‑1 (MQ=255) gtcacgtcacAGTGGGGCGGG‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTg < 1:11392116/102‑1 (MQ=255) gtcacgtcacAGTGGGGCGGG‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCTGAATCTGGGGAGAGGGTGGTGCAgtt > 1:4217881/1‑140 (MQ=255) gtcacgtcacAGTGGGGCGGG‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCTGAATCTGGGGAGAGGGTGGTGCAgtt > 2:2281347/1‑140 (MQ=255) cacgtcacAGTGGGGCGGG‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCTGAATCTGGGGAGAGGGTGGTGCAgttgt < 2:3031384/140‑1 (MQ=255) acgtcacAGTGGGGCGGG‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCTGAATCTGGGGAGAGGGTGGTGCAgttgtt < 2:7347924/140‑1 (MQ=255) acgtcacAGTGGGGCGGG‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCTGAATCTGGGGAGAGGGTGGTGCAgttgtt < 1:8124686/140‑1 (MQ=255) acgtcacAGTGGGGCGGG‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCTGAATCTGGGGAGAGGGTGGTGCAgttgtt < 2:412125/140‑1 (MQ=255) acgtcacAGTGGGGCGGG‑AGTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCTGAATCTGGGGAGAGGGTGGTGCAgttgtt < 1:7949343/140‑1 (MQ=255) acgtcacAGTGGGGC‑GGTATTTCCCCGCGCGCTGGTCGTTGACATAAAAAATGCTGCAAAGTGCTCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCTTGAATCTGGGGAGAGGGTGGTGCAgttgtt < 2:6600754/140‑1 (MQ=255) tcacAGTGGGGCGGG‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCTGAATCTGGGGAGAGGGTGGTGCAGTTGTTGAt > 2:2403083/1‑140 (MQ=255) cacaGTGGGGCGGG‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCTGAATCTGGGGAGAGGGTGGTGCAGTTGTTGATc < 1:8582967/140‑1 (MQ=255) cacaGTGGGGCGGG‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCTGAATCTGGGGAGAGGGTGGTGCAGTTGTTGATc > 2:1935301/1‑140 (MQ=255) ggggCGGG‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCTGAATCTGGGGAGAGGGTGGTGCAGTTGTTGATCATGAag < 1:2104761/140‑1 (MQ=255) ggggCGGG‑ATTTCCCCGCGCGCTTGTCGNTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCTGAATCTGGGGAGAGGGTGGTGCAGTTGTTGATCATGAag < 1:6150237/140‑1 (MQ=255) | CAGTTCGGGCCATAAACGCAAAGTCGTTCCGGCAATCTGCATCAGTTTTTCCAGCGATGCACCTTCGCGTGCGCTGATCGACATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGC‑GG‑ATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCTGAATCTGGGGAGAGGGTGGTGCAGTTGTTGATCATGAAG > NZ_CP025268/1175310‑1175582 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |