| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP025268 | 1,374,862 | (T)8→9 | intergenic (+40/‑172) | pspE → / → ycjM | thiosulfate sulfurtransferase PspE/glucosylglycerate phosphorylase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP025268 | 1,374,854 | 1 | . | T | 93.5% | 1940.3 / 126.1 | 649 | intergenic (+32/‑180) | pspE/ycjM | thiosulfate sulfurtransferase PspE/glucosylglycerate phosphorylase |
| Reads supporting (aligned to +/- strand): ref base . (22/19); new base T (303/285); total (325/324) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 8.72e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.67e-01 | |||||||||||
Only 100 of 704 total aligned reads displayed.
GACGCCAGTCAGGGCAAGCAAAAGAGATCCTTAGCGAGATGGGATATACCCACGTTGAGAACGCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑‑T‑TT‑T‑T‑TTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTGGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTG > NZ_CP025268/1374716‑1374987 | gACGCCAGTCAGGGCAAGCAAAAGAGATCCTTAGCGAGATGGGATATACCCACGTTGAGAACGCCGGTGGCCTGAAAGACATCGCTATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑‑t > 2:8697590/1‑140 (MQ=255) gTCAGGGCAAGCAAAAGAGATCCTTAGCGAGATGGGATATACCCACGTTGAGAACGCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑‑t‑tt‑t‑t‑ttt > 2:1318429/1‑140 (MQ=255) gTCAGGGCAAGCAAAAGAGATCCTTAGCGAGATGGGATATACCCACGTTGAGAACGCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑‑t‑tt‑t‑t‑ttt > 1:10864541/1‑140 (MQ=255) tCAGGTCAAGCAAAAGAGATCCTTAGCGAGATGGGATATACCCACGTTGAGAACGCCGGTGGCCAGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑‑t‑tt‑t‑t‑tttt < 2:1818964/140‑2 (MQ=255) tCAGGGCAAGCAAAAGAGATCCTTAGCGAGATGGGATATACCCACGTTGAGAACGCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑‑a‑tt‑t‑t‑tttt < 2:4785882/140‑2 (MQ=255) ggCAAGCAAAAGAGATCCTTAGCGAGATGGGATATACCCACGTTGAGAACGCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑‑t‑tt‑t‑t‑ttttctgt < 1:3272217/140‑6 (MQ=255) caagcaaAAGAGATCCTTAGCGAGATGGGATATACCCACGTTGAGAACGCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCGT‑T‑TT‑T‑T‑TTTCTGTca < 2:410638/140‑1 (MQ=255) aagcaaAAGAGATCCTTAGCGAGATGGGATATACCCACGTTGAGAACGCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCGT‑T‑TT‑T‑T‑TTTCTGTcac < 2:984913/140‑1 (MQ=255) aagcaaAAGAGATCCTTAGCGAGATGGGATATACCCACGTTGAGAACGCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCGT‑T‑TT‑T‑T‑TTTCTGTcac < 1:7622227/140‑1 (MQ=255) aagcaaAAGAGATCCTTAGCGAGATGGGATATACCCACGTTGAGAACGCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCGT‑T‑TT‑T‑T‑TTTCTGTcac < 1:7360500/140‑1 (MQ=255) aagcaaAAGAGATCCTTAGCGAGATGGGATATACCCACGTTGAGAACGCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCGT‑T‑TT‑T‑T‑TTTCTGTcac < 1:4427397/140‑1 (MQ=255) aagcaaAAGAGATCCTTAGCGAGATGGGATATACCCACGTTGAGAACGCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCGT‑T‑TT‑T‑T‑TTTCTGTcac < 2:2204515/140‑1 (MQ=255) caaAAGAGATCCTTAGCGAGATGGGATATACCCACGTTGAGAACGCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCGT‑T‑TT‑T‑T‑TTTCTGTCACAcc < 2:4545736/140‑1 (MQ=255) aaaGAGATCCTTAGCGAGATGGGATATACCCACGTTGAGAACGCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCGT‑T‑TT‑T‑T‑TTTCTGTCACACCtt < 2:6317310/140‑1 (MQ=255) gagaTCCTTAGCGAGATGGGATATACCCACGTTGAGAACGCCGGTGGCCTGAAAGACATCGCTATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCGT‑T‑TT‑T‑T‑TTTCTGTCACACCTTAtt < 1:6928894/140‑1 (MQ=255) gaTCCTTAGCGAGATGGGATATACCCACGTTGAGAACGCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCGT‑T‑TT‑T‑T‑TTTCTGTCACACCTTATTTa < 1:8527675/140‑1 (MQ=255) gaTCCTTAGCGAGATGGGATATACCCACGTTGAGAACGCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCGT‑T‑TT‑T‑T‑TTTCTGTCACACCTTATTTa < 1:9402120/140‑1 (MQ=255) gaTCCTTAGCGAGATGGGATATACCCACGTTGAGAACGCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCGT‑T‑TT‑T‑T‑TTTCTGTCACACCTTATTTa < 1:311095/140‑1 (MQ=255) aTCCTTAGCGAGATGGGATATACCCACGTTGAGAACGCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTATAAGTATTCACCATGAGCGGCGCGTATGCGCCGT‑T‑TT‑T‑T‑TTTCTGTCACACCTTATTTAc > 2:9365523/1‑140 (MQ=255) aTCCTTAGCGAGATGGGATATACCCACGTTGAGAACGCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCGT‑T‑TT‑T‑T‑TTTATTTCACACCTTAttttc > 2:5590845/1‑138 (MQ=255) tCCTTAGCGAGATGGGATATACCCACGTTGAGAACGCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCGT‑T‑TT‑T‑T‑TTTCTGTCACACCTTATTTACa < 2:2871324/140‑1 (MQ=255) tCCTTAGCGAGATGGGATATACCCACGTTGAGAACGCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCGT‑T‑TT‑T‑T‑TTTCTGTCACACCTTATTTACa < 2:2408942/140‑1 (MQ=255) tCCTTAGCGAGATGGGATATACCCACGTTGAGAACGCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCGT‑T‑TT‑T‑T‑TTTCTGTCACACCTTATTTACa < 1:3929923/140‑1 (MQ=255) tCCTTAGCGAGATGGGATATACCCACGTTGAGAACGCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCGT‑T‑TT‑T‑T‑TTTCTGTCACACCTTATTTACa < 1:4581819/140‑1 (MQ=255) tCCTTAGCGAGATGGGATATACCCACGTTGAGAACGCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCGT‑T‑TT‑T‑T‑TTTCTGTCACACCTTATTTACa < 1:5294855/140‑1 (MQ=255) ccTTAGCGAGATGGGATATACCCACGTTGAGAACGCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCGT‑T‑TT‑T‑T‑TTTCTGTCACACCTTATTTACAt > 2:3998855/1‑140 (MQ=255) ccTTAGCGAGATGGGATATACCCACGTTGAGAACGCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCGT‑T‑TT‑T‑T‑TTTATGTCACACCTTATTTACaa > 1:8944326/1‑139 (MQ=255) ccTTAGCGAGATGGGATATACCCACGTTGAGAACGCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCGT‑T‑TT‑T‑T‑TTTATGTCACACCTTATTTAAAt > 1:9063229/1‑140 (MQ=255) tAGCGAGATGGGATATACCCACGTTGAGAACGCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCGT‑T‑TT‑T‑T‑TTTCTGTCACACCGTATTTACATccc > 2:10233411/1‑140 (MQ=255) gCGAGATGGGATATACCCACGTTGAGAACGCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCGT‑T‑TT‑T‑T‑TTTCTGTCACACCTTATTTACATCCCCa < 2:3127489/140‑1 (MQ=255) gCGAGATGGGATATACCCACGTTGAGAACGCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCGT‑T‑TT‑T‑T‑TTTCTGTCACACCTTATTTACATCCCCa < 1:7850122/140‑1 (MQ=255) gaTGGGATATACCCACGTTGAGAACGCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCGT‑T‑TT‑T‑T‑TTTCTGTCACACCTTATTTACATCCCCATAGa < 1:7189944/140‑1 (MQ=255) aTGGGATATACCCACGTTGAGAACGCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCGT‑T‑TT‑T‑T‑TTTCTGTCACAcc > 2:10705336/1‑120 (MQ=255) aTGGGATATACCCACGTTGAGAACGCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCGT‑T‑TT‑T‑T‑TTTCTGTCACACCTTATTTACATCCCCATAGat > 2:11611021/1‑140 (MQ=255) aTGGGATATACCCACGTTGAGAACGCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCGT‑T‑TT‑T‑T‑TTTCTGTCACACCTTATTTACATCCCCATAGat > 1:6368068/1‑140 (MQ=255) aTGGGATATACCCACGTTGAGAACGCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCGT‑T‑TT‑T‑T‑TTTCTGTCACACCTTATTTACATCCCCATAGat > 1:8366734/1‑140 (MQ=255) aCCCACGTTGAGAACGCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCGT‑T‑TT‑T‑T‑TTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGt < 1:6061474/140‑1 (MQ=255) aCCCACGTTGAGAACGCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCGT‑T‑TT‑T‑T‑TTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGt > 2:11390794/1‑140 (MQ=255) cccACGTTGAGAACGCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCGT‑T‑TT‑T‑T‑TTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTc > 1:5726137/1‑140 (MQ=255) aCGTTGAGAACGCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCGT‑T‑TT‑T‑T‑TTTCTGTCACACCTTATTTACATCCCCATAGAGTATTTGCGTCAGc > 2:6510067/1‑140 (MQ=255) cGTTGAGAACGCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCGT‑T‑TT‑T‑T‑TTTCTGTCACACCGTAATTACATCCCCATAGATTATTTGCGTCAGCt > 2:10806313/1‑140 (MQ=255) cGTTGAGAACGCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCGT‑T‑TT‑T‑T‑TTTATGTCAAAACGTATTTACATCCCCAATGATTATTTTCGTCAGCt > 1:2562128/1‑140 (MQ=255) gTTGAGAACGCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCGT‑T‑TT‑T‑T‑TTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTc > 2:9076302/1‑140 (MQ=255) gagaACGCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCGT‑T‑TT‑T‑T‑TTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTcaca > 2:3815183/1‑140 (MQ=255) aaCGCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCGT‑T‑TT‑T‑T‑TTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAAt < 2:887124/140‑1 (MQ=255) aCGCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCGT‑T‑TT‑T‑T‑TTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATa < 1:10171168/140‑1 (MQ=255) tGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCGT‑T‑TT‑T‑T‑TTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCtttt > 2:8150149/1‑140 (MQ=255) gCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCGT‑T‑TT‑T‑T‑TTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCACACAAATACGCTTTTTc > 1:10643322/1‑140 (MQ=255) ccTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCGT‑T‑TT‑T‑T‑TTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTcc < 2:3718675/140‑1 (MQ=255) ccTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCGT‑T‑TT‑T‑T‑TTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTcc < 1:5812238/140‑1 (MQ=255) aCATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCGA‑T‑TT‑T‑T‑TTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTGGTaaa < 1:3680627/140‑1 (MQ=255) aTCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCGT‑T‑TT‑T‑T‑TTTCTGTCACCCCGTTTTTACATACCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTGCCTGGTaaaaa > 1:8756212/1‑140 (MQ=255) aTCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCGT‑T‑TT‑T‑T‑TTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTGGTaaaaa > 2:772370/1‑140 (MQ=255) aTCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCGT‑T‑TT‑T‑T‑TTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTGGTaaaaa > 1:11123550/1‑140 (MQ=255) aTCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCGT‑T‑TT‑T‑T‑TTTCGGTCAAACCATATTTACAACCCAATATAATAATAGCGTCAGCAAACAAATACGCATTTTACCTGGTaaaaa > 1:2716108/1‑140 (MQ=255) aTCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCGT‑T‑TT‑T‑T‑TTTATGTCACACCTTATTTACATACCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTGCCGGGTaaaaa > 1:8259783/1‑140 (MQ=255) aTCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑‑TGTT‑T‑T‑TTTATGTAACACCTTATTTACAAACCCAAAGATTATTTGCGTCAGCACACAAATAAGCTTTTTCCCGGGTaaaaa > 1:114676/1‑140 (MQ=255) cGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCGA‑T‑TT‑T‑T‑TTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTGGTAAAAAAt < 2:6090993/140‑1 (MQ=255) cAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCGT‑T‑TT‑T‑T‑TTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTGGTAAAAAATGa < 1:2008807/140‑1 (MQ=255) cAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCGT‑T‑TT‑T‑T‑TTTCTGTCACACCCTATTTAAATCCCCAAAGAATATTTTCGTCAGCTCACAAATACACTTTTTACCACTTAAAAAATGa > 1:2376882/1‑140 (MQ=255) aTGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCGT‑T‑TT‑T‑T‑TTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTGGTAAAAAATGAtt > 2:7898818/1‑140 (MQ=255) aTGCCGAAGCACAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑‑T‑TTAT‑T‑TTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCATTTTCCCTGGTAAAAAATGAtt < 1:1612530/140‑1 (MQ=255) aGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCGT‑T‑TT‑T‑T‑TTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTGGTAAAAAATGATTTCCTGCg < 1:6661388/140‑1 (MQ=255) aGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCGT‑T‑TT‑T‑T‑TTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTGGTAAAAAATGATTTCCTGCg < 1:10287292/140‑1 (MQ=255) aGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCGT‑T‑TT‑T‑T‑TTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTGGTAAAAAATGATTTCCTGCg < 1:8053567/140‑1 (MQ=255) aGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCGT‑T‑TT‑T‑T‑TTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTGGTAAAAAATGATTTCCTGCg < 1:9838790/140‑1 (MQ=255) aGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCGA‑T‑TT‑T‑T‑TTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTGGTAAAAAATGATTTCCTGCg < 2:8547850/140‑1 (MQ=255) ggTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCGT‑T‑TT‑T‑T‑TTTCTGTCACACCTTATTTACATACCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTGGTAAAAAATGATTTCCTGCGt > 2:5403383/1‑140 (MQ=255) aaaGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCGT‑T‑TT‑T‑T‑TTTATGTTAAACCGTATTTAAAAACCCATATATTATTTTCGTCAGCTCACAAATACGCTTTTTCCCTGGTAAAAAATGTTTTACTGGGTGTCt > 1:1124187/1‑140 (MQ=255) aaGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCGT‑T‑TT‑T‑T‑TTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTGGTAAAAAATGATTTCCTGCGTGACTa > 2:762932/1‑140 (MQ=255) aGGTTAACAGAATTCACCATGAGCGGCGCTTATGCGCCGT‑T‑TT‑T‑T‑TTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTGGTAAAAAATGATTTCCTGCGTGACTaa < 2:1951822/140‑1 (MQ=255) gTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCGT‑T‑TT‑T‑T‑TTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTGGTAAAAAATGATTTCCTGCGTGACTaaaa < 1:6558519/140‑1 (MQ=255) aaaaGAATTCACCATGAGCGGCGCTTATGCGCCGT‑T‑TT‑T‑T‑TTTTTTTAAAACCATATTTAAAAACCCAAATATTATTTGAGGAACCAAACAAAAAAGCAATTTACATGGATAAAAATGATTTAAATCGTGACAAAAAacc > 1:7026499/1‑140 (MQ=255) aaaaGAATTCACCATGAGCGGCGCTTATGCGCCGT‑T‑TT‑T‑T‑TTTCTGTCACACCTTATTTa > 2:686701/1‑60 (MQ=255) aaaaGAATTCACCATGAGCGGCGCTTATGCGCCGT‑T‑TT‑T‑T‑TTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTGGTAAAAAATGATTTCCTGCGTGACTAAAAccc < 2:8322069/140‑1 (MQ=255) aaaaGAATTCACCATGAGCGGCGCTTATGCGCCGT‑T‑TT‑T‑T‑TTTCTGTCACACCGTAATTTCAAACCCAAAGATTAATTGCGTCAGCTCAAAAATACGCATTTTCCCAGGGAAAAAAAGATTTCCGGCGTGACTAAAAccc > 1:1348071/1‑140 (MQ=255) aaGAATTCACCATGAGCGGCGCTTATGCGCCGT‑T‑TT‑T‑T‑TTTCTGTCACTCCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTGGTAAAAAATGATTTCCTGCGTGACTAAAACCCtt < 2:2623442/140‑1 (MQ=255) gAATTCACCTTGTGCGGCGCTTATGCGCCGT‑T‑TT‑T‑T‑TTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTGGTAAAAAATGATTTCCTGCGTGACTAAAACCCTtgt < 1:2139985/140‑1 (MQ=255) gAATTCACCATGAGCGGCGCTTATGCGCCGT‑T‑TT‑T‑T‑TTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTGGTAAAAAATGATTTCCTGCGTGACTAAAACCCTtgt < 1:1804895/140‑1 (MQ=255) ccatccACCCTGAGCGGCGCTTATGCGCCG‑‑T‑TT‑T‑TGTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTGGTAAAAAATGATTTCCTGCGTGACTAAAACCCTtgt < 2:10959127/135‑1 (MQ=255) aaTTCACCATGAGCGGCGCTTATGGGCGT‑‑T‑TT‑T‑T‑TTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTGGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGc < 1:345140/140‑1 (MQ=255) ttCACCATGAGCGGCGCTTCTGCGCCGT‑T‑TT‑T‑T‑TTTCTGTCACAGCTTATTTACATCCCCCTAGATTATTTGCTTCAGCTCACAAATACGCGTTGTCCGAGGTAACAAATGAAGTCCAGCGAGACTAAAACCCTTGTGcg > 2:10025380/1‑139 (MQ=255) ttCACCATGAGCGGCGCTTATGCGCCGT‑T‑TT‑T‑T‑TTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTGGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCt > 2:4274370/1‑140 (MQ=255) ttCACCATGAGCGGCGCTTATGCGCCGT‑T‑TT‑T‑T‑TTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTGGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCt > 2:5800706/1‑140 (MQ=255) ttCACCATGAGCGGCGCTTATGCGCCGT‑T‑TT‑T‑T‑TTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTGGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCt > 2:5002512/1‑140 (MQ=255) ttCACCATGAGCGGCGCTTATGAGCCG‑‑T‑TT‑TAT‑TTTCTGTCACACCTTATTTACATCCCCCTAGAATATTTGAGTCAGCAAACAAATACGCATTTTCCATGGTAAAAAATTAATTAATGAGTGACTAAAACACTtttgaa > 2:5273423/1‑138 (MQ=255) tCACCATGAGCGGCGCTTATGCGCCGT‑T‑TT‑T‑T‑TTTCTTTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTGGTAAAAAATGATTTCCTGCGTGACTAAATCACTTGTGCTc > 2:8617132/1‑140 (MQ=255) gAGCGGCGCTTATGCGCCGT‑T‑TT‑T‑T‑TTTCTGTCACACCGTATTTACATACCCATATATTATTTGCGTCAGCTCACAAATAACCATTTTCCCAGGTAAAAAATGATTTACTGCGTGACGAAAAACCATGTGCTCAATTTAc > 1:488632/1‑140 (MQ=255) gAGCGGCGCTTATGCGCCGT‑T‑TT‑T‑T‑TTTATGTCACCCCGTATTTAAATACCCATAGATTATTTGCGGCAGCTCACAAATACGCTTTTTGCCTGGTAAAAAATTATTTCCTGCGGGTCAAAAAACCGTGTGCGCAATTGAc > 1:4315488/1‑140 (MQ=255) gcgcTTATGCGCCGT‑T‑TT‑T‑T‑TTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTGGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGttt > 2:345442/1‑140 (MQ=255) gcgcTTATGCGCCGT‑T‑TT‑T‑T‑TTTCTGTCACACCGTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTGGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGttt > 1:11570136/1‑140 (MQ=255) gcgcTTAGGCGCCGT‑T‑TT‑T‑T‑TTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTGGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGttt < 2:1498665/140‑1 (MQ=255) cgcTTATGCGCCGTTT‑TT‑T‑T‑TTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTGGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTTTCAGttt > 2:9575338/1‑140 (MQ=255) cgcTTATGCGCCGT‑T‑TT‑T‑T‑TTTCTGTCACACCGTATTTACAACCCCCAAGATTATTTTCGTCAGCTCACAAAAACGCTTTTTACCTGGTAAAAAATGATTTCCTTCGTGACTAAAACCCTTGTGCTCAAATGACAGTTTa > 1:9603830/1‑140 (MQ=255) cTTATGCGCCGT‑T‑TT‑T‑T‑TTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATa < 2:7308578/72‑1 (MQ=255) cTTATGCGCCGT‑T‑TT‑T‑T‑TTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTGGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTAtt < 1:10030488/140‑1 (MQ=255) tATGCGCCGT‑T‑TT‑T‑T‑TTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTGGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTAtttt < 2:10346547/140‑1 (MQ=255) aTGCGCCGT‑T‑TT‑T‑T‑TTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTGGTAAAAAAAGATTTCCTGCGTGACTAAAACCCTTGTGCTCAAATGACAGTTTATTTTc > 2:6588184/1‑140 (MQ=255) aTGCGCCGT‑T‑TT‑T‑T‑TTTCTGTCACACCTTATTTACAACCCCATAGATTATTTTCGTCAGCTCACAAAAACGCTTTTTACCTGGTAAAAAATTATTTCCTGCGTGACTAAAAACCTTTTGCTAAATTGTCAGTTTAtttta > 2:3587716/1‑139 (MQ=255) tGCGCCGT‑T‑TT‑T‑T‑TTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTGGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCt < 1:2909712/140‑1 (MQ=255) | GACGCCAGTCAGGGCAAGCAAAAGAGATCCTTAGCGAGATGGGATATACCCACGTTGAGAACGCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑‑T‑TT‑T‑T‑TTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTGGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTG > NZ_CP025268/1374716‑1374987 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |