BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NZ_CP025268	1,629,176	(T)_7→8	pseudogene (141/392 nt)	ydeI ←	YdeI family stress tolerance OB fold protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NZ_CP025268	1,629,169	1	.	T	95.3%	1089.1 / 37.5	299	pseudogene (148/392 nt)	ydeI	YdeI family stress tolerance OB fold protein
Reads supporting (aligned to +/- strand): ref base . (1/13); new base T (81/204); total (82/217)
Fisher's exact test for biased strand distribution p-value = 1.23e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 309 total aligned reads displayed.

GACGGCCGCAGGAATAACGACATTAATTTCACCGCTCTTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑A‑T‑TTTTT‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCAACGCATAAGGCATGACAAGAAAACTTGCTAATACAAT  >  NZ_CP025268/1629030‑1629301

     ccGCAGGAATAACGACATTAATTTCACCGCTCTTATCGCGAAAAACGTAACAGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑A‑t‑tttt                                                                                                                                  >  1:4408889/1‑140 (MQ=255)

      cGCAGGAATAACGACATTAATTTCACCGCTCTTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑A‑t‑ttttt                                                                                                                                 <  2:8200701/140‑1 (MQ=255)

          ggAATAACGACATTAATTTCACCGCTCTTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑A‑t‑ttttt‑ttgc                                                                                                                            <  2:5065401/140‑4 (MQ=255)

                aCGACTTTAATTTCACCGCTCTTATCGCGAAAAACGTAACGGTCCTCTCCTGTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCAGCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATT‑TTTTT‑TGCatcatc                                                                                                                       <  1:6353308/140‑1 (MQ=255)

                   aCATTAATTTCACCGCTCTTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATT‑TTTTT‑TGCATCATCGGt                                                                                                                    <  1:1378540/140‑1 (MQ=255)

                      ttAATTTCACCGCTCTTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATT‑TTTTT‑TGCATCATCGGTTcc                                                                                                                 >  2:5990378/1‑140 (MQ=255)

                       tAATTTCACCGCTCTTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATT‑TTTTT‑TGCATCATCGGTTCcg                                                                                                                <  1:11499673/140‑1 (MQ=255)

                       tAATTTCACCGCTCTTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATT‑TTTTT‑TGCATCATCGGTTCcg                                                                                                                <  2:1026956/140‑1 (MQ=255)

                        aaTTTCACCGCTCTTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATT‑TTTTT‑TGCATCATCGGTTCcgc                                                                                                               <  2:1824163/140‑1 (MQ=255)

                        aaTTTCACCGCTCTTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATT‑TTTTT‑TGCATCATCGGTTCcgc                                                                                                               <  1:4890200/140‑1 (MQ=255)

                          tttCACCGCTCTTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATT‑TTTTT‑TGCATCATCGGTTCCGCGa                                                                                                             <  1:6473286/140‑1 (MQ=255)

                          tttCACCGCTCTTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATT‑TTTTT‑TGCATCATCGGTTCCGCGa                                                                                                             <  2:2869207/140‑1 (MQ=255)

                             cACCGCTCTTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGCAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATT‑TTTTT‑TGCATCATCGGTTCCGCGATAg                                                                                                          <  2:9392143/140‑1 (MQ=255)

                             cACCGCTCTTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATT‑TTTTT‑TGCATCATCGGTTCCGCGATAg                                                                                                          <  1:194130/140‑1 (MQ=255)

                              aCCGCTCTTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCTCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATT‑TTTTT‑TGCATCATCGGTTCCGCGATAGc                                                                                                         >  2:3401411/1‑140 (MQ=255)

                              aCCGCTCTTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATT‑TTTTT‑TGCATCATCGGTTCCGCGATAGc                                                                                                         >  2:6539548/1‑140 (MQ=255)

                              aCCGCTCTTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCAGCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATT‑TTTTT‑TGCATCATCGGTTCCGCGATAGc                                                                                                         >  1:10297977/1‑140 (MQ=255)

                              aCCGCTCTGATCGCGTCTAACGTAACGGTCCTCTGCTTTGTGAGAAATCAAATTACCGCGTAGTGAATCCGTAGCGCCATCGTGCATGGTTGTTGCGAAATCACCGGGC‑A‑T‑TTTGT‑TGCAGCATCGGTTCCGCGATAGcc                                                                                                        <  2:7306257/140‑1 (MQ=255)

                               ccGCTCTTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAACCCGAAGCGCCATCGGGCATGGTTTTTGCGAAATCAACGGTC‑ATT‑TTTTT‑TGCATCATCGGTTCCGCGATAGcc                                                                                                        <  2:497120/140‑1 (MQ=255)

                               ccGCTCTTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATT‑TTTTT‑TGCATCATCGGTTCCGCGATAGcc                                                                                                        <  2:3515390/140‑1 (MQ=255)

                               ccGCTCTTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATT‑TTTTT‑TGCATCATCGGTTCCGCGATAGcc                                                                                                        >  1:2236558/1‑140 (MQ=255)

                               ccGCTCTTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATT‑TTTTT‑TGCATCATCGGTTCCGCGATAGcc                                                                                                        <  1:915306/140‑1 (MQ=255)

                                cGCTCTTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATT‑TTTTT‑TGCATCATCGGTTCCGCGATAGCCa                                                                                                       <  1:8605909/140‑1 (MQ=255)

                                 gCTCTTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATT‑TTTTT‑TGCATCATCGGTTCCGCGATAGCCAt                                                                                                      <  2:5331966/140‑1 (MQ=255)

                                  ctctTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATAAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTCTT‑T‑TTTTT‑TGCATCATCGGTTCCTCGATAGCCAtc                                                                                                     <  2:4713928/140‑1 (MQ=255)

                                   tctTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATT‑TTTTT‑TGCATCATCGGTTCCGCGATAGCCAtct                                                                                                    >  1:10624082/1‑140 (MQ=255)

                                       aTCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATT‑TTTTT‑TGCATCATCGGTTCCGCGATAGCCATCTTCTa                                                                                                >  2:8915660/1‑140 (MQ=255)

                                        tCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATT‑TTTTT‑TGCATCATCGGTTCCGCGATAGCCATCTTCTAt                                                                                               <  1:5676389/140‑1 (MQ=255)

                                            gAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATT‑TTTTT‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCa                                                                                           >  1:8480347/1‑140 (MQ=255)

                                            gAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATT‑TTTTT‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCa                                                                                           <  1:10510736/140‑1 (MQ=255)

                                            gAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATT‑TTTTT‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCa                                                                                           >  2:227511/1‑140 (MQ=255)

                                            gAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATT‑TTTTT‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCa                                                                                           <  2:6360115/140‑1 (MQ=255)

                                                aaCGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATT‑TTTTT‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAg                                                                                       <  1:5932413/140‑1 (MQ=255)

                                                  cGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATT‑TTTTT‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAggc                                                                                     <  1:2394729/140‑1 (MQ=255)

                                                        ggTCCTCTCCTTTGTGAGAAATCAAATAACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATT‑TTTTT‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGt                                                                               <  2:6126497/140‑1 (MQ=255)

                                                         gTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATT‑TTTTT‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTg                                                                              <  2:6684832/140‑1 (MQ=255)

                                                         gTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATT‑TTTTT‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTg                                                                              <  2:2914170/140‑1 (MQ=255)

                                                         gTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATT‑TTTTT‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTg                                                                              <  1:5052240/140‑1 (MQ=255)

                                                            ctctCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATT‑TTTTT‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGgcg                                                                           >  2:1403322/1‑140 (MQ=255)

                                                            ctctCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATT‑TTTTT‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGgcg                                                                           <  2:5525701/140‑1 (MQ=255)

                                                              ctcCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATT‑TTTTT‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCt                                                                         <  2:11527241/140‑1 (MQ=255)

                                                               tcCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATT‑TTTTT‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTg                                                                        <  2:9660198/140‑1 (MQ=255)

                                                                   ttGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATT‑TTTTT‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATc                                                                    <  1:8845012/140‑1 (MQ=255)

                                                                   ttGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATT‑TTTTT‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATc                                                                    <  1:379403/140‑1 (MQ=255)

                                                                   ttGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATT‑TTTTT‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATc                                                                    <  1:2541740/140‑1 (MQ=255)

                                                                   ttGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATT‑TTTTT‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATc                                                                    <  2:11063112/140‑1 (MQ=255)

                                                                   ttGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATT‑TTTTT‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATc                                                                    <  2:5756907/140‑1 (MQ=255)

                                                                   ttGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATT‑TTTTT‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATc                                                                    <  1:11589187/140‑1 (MQ=255)

                                                                   ttGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATT‑TTTTT‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATc                                                                    <  1:8923007/140‑1 (MQ=255)

                                                                   ttGTGAGAAATCAAATGACCGCGTAGTGAAACCGAAGCGCCATAGTGCATGGTTTTTGCGAAATCAACGGTC‑ATT‑TTTTT‑TGCATCATCGGGTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCTGTGGCGCTGCATc                                                                    <  2:193545/140‑1 (MQ=255)

                                                                    tgtgAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATT‑TTTTT‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATcc                                                                   >  1:11182408/1‑140 (MQ=255)

                                                                    tgtgAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATT‑TTTTT‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATcc                                                                   >  1:6707234/1‑140 (MQ=255)

                                                                    tgtgAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATT‑TTTTT‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATcc                                                                   >  2:868247/1‑140 (MQ=255)

                                                                        agaAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATT‑TTTTT‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGtt                                                               >  1:9631062/1‑140 (MQ=255)

                                                                           aaTCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATT‑TTTTT‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTa                                                            <  1:1359724/140‑1 (MQ=255)

                                                                           aaTCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATT‑TTTTT‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTa                                                            >  2:10912755/1‑140 (MQ=255)

                                                                                aaTTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATT‑TTTTT‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCg                                                       >  1:3573574/1‑140 (MQ=255)

                                                                                    aCCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATT‑TTTTT‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCt                                                   >  1:10538701/1‑140 (MQ=255)

                                                                                    aCCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATT‑TTTTT‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCt                                                   <  2:4318395/140‑1 (MQ=255)

                                                                                      cgcgTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATT‑TTTTT‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTgg                                                 >  2:2726693/1‑140 (MQ=255)

                                                                                       gcgTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATT‑TTTTT‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGt                                                >  2:7230802/1‑140 (MQ=255)

                                                                                           aGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATT‑TTTTT‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATc                                            <  1:2123634/140‑1 (MQ=255)

                                                                                           aGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATT‑TTTTT‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATc                                            >  1:7883945/1‑140 (MQ=255)

                                                                                             tGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATT‑TTTTT‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTg                                          <  2:5935689/140‑1 (MQ=255)

                                                                                               ataCCGAAGCGCCCTCGTGCATGGTTTTTGCGAAATCACCGGTC‑ATT‑TTTTT‑TGCTTCATCGGTTCCGCGATTGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGcc                                        <  1:5371441/138‑1 (MQ=255)

                                                                                               aaaCCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCACCGGTC‑A‑TGTTTTT‑TGCATCATCGGTTCCGCGCTAGCCATCTTCTAGTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCGGGTCATCTGcc                                        <  2:7836249/140‑1 (MQ=255)

                                                                                               aaaCCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATT‑TTTTT‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGcc                                        <  2:2531239/140‑1 (MQ=255)

                                                                                               aaaCCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATT‑TTTTT‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGcc                                        <  2:8040447/140‑1 (MQ=255)

                                                                                                aaCCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATT‑TTTTT‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCa                                       <  1:2992098/140‑1 (MQ=255)

                                                                                                aaCCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATT‑TTTTT‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCa                                       <  1:1194158/140‑1 (MQ=255)

                                                                                                aaCCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATT‑TTTTT‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCa                                       <  1:10657117/140‑1 (MQ=255)

                                                                                                aaCCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATT‑TTTTT‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCa                                       <  1:9744642/140‑1 (MQ=255)

                                                                                                aaCCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATT‑TTTTT‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCa                                       <  2:4103202/140‑1 (MQ=255)

                                                                                                  ccGAAGCGCCATCGTGCATGGTTTTGGCGAAATCAACGGTC‑ATT‑TTTTT‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCAAc                                     <  2:7688832/140‑1 (MQ=255)

                                                                                                     aaGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATT‑TTTTT‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCAACGCa                                  >  1:2744606/1‑140 (MQ=255)

                                                                                                           cATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATT‑TTTTT‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCAACGCATAAGGc                            <  2:10321088/140‑1 (MQ=255)

                                                                                                           cATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATT‑TTTTT‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCAACGCATAAGGc                            <  1:1439340/140‑1 (MQ=255)

                                                                                                             tCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATT‑TTTTT‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCAACGCATAAGGCAt                          <  1:10837135/140‑1 (MQ=255)

                                                                                                             tCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATT‑TTTTT‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCAACGCATAAGGCAt                          <  1:9509594/140‑1 (MQ=255)

                                                                                                             tCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATT‑TTTTT‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCAACGCATAAGGCAt                          >  2:3907720/1‑140 (MQ=255)

                                                                                                             tCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATT‑TTTTT‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCAACGCATAAGGCAt                          <  2:10728058/140‑1 (MQ=255)

                                                                                                             tCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATT‑TTTTT‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCAACGCATAAGGCAt                          <  1:4102579/140‑1 (MQ=255)

                                                                                                             tCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATT‑TTTTT‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCAACGCATAAGGCAt                          <  2:3102017/140‑1 (MQ=255)

                                                                                                              cGTGCATGGTTTTTGCGAAATCAACGGTC‑ATT‑TTTTT‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCAACGCATAAGGCATg                         <  2:11182408/140‑1 (MQ=255)

                                                                                                               gTGCATGGTTTTTGCGAAATCAACGGTC‑ATT‑TTTTT‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCAACGCATAAGGCATGa                        >  1:7355979/1‑140 (MQ=255)

                                                                                                                 gCATGGTTTTTGCGAAATCAACGGTC‑ATT‑TTTTT‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCAACGCATAAGGCATGACa                      <  1:1643587/140‑1 (MQ=255)

                                                                                                                     ggTTTTTGCGAAATCAACGGTC‑ATT‑TTTTT‑TGCATCATCGGTTCCGCGATAGCCATCTNCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCAACGCATAAGGCATGACAAGaa                  >  1:6179730/1‑140 (MQ=255)

                                                                                                                       tttttGCGAAATCAACTGTC‑ATT‑TTTTT‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCAACGCATAAGGCATGACAAGaaaa                <  2:8483249/140‑1 (MQ=255)

                                                                                                                       tttttGCGAAATCAACGGTC‑ATT‑TTTTT‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCCTGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCAACGCATAAGGCATGACAAGaaaa                <  2:9233638/140‑1 (MQ=255)

                                                                                                                       tttttGCGAAATCAACGGTC‑ATT‑TTTTT‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCACCGCATAAGGCATGACAAGaaaa                <  2:3970015/140‑1 (MQ=255)

                                                                                                                       tttttGCGAAATCAACGGTC‑ATT‑TTTTT‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCAACGCATAAGGCATGACAAGaaaa                <  2:10089710/140‑1 (MQ=255)

                                                                                                                         tttGCGAAATCAACGGTC‑ATT‑TTTTT‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCAACGCATAAGGCATGACAAGAAAACt              <  2:6831414/140‑1 (MQ=255)

                                                                                                                            gCGAAATCAACGGTC‑A‑T‑TTTTTGTGCATCATCGGGTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTACACCGCCCTGGTCATCTGCCAACGCATAAGGCATGACAAGAAAACTTGc           <  2:11370466/140‑1 (MQ=255)

                                                                                                                                 aTCAACGGTC‑ATT‑TTTTT‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCAACGCATAAGGCATGACAAGAAAACTTGCTAAtc      >  1:10151169/1‑139 (MQ=255)

                                                                                                                                   cAACGGTC‑ATT‑TTTTT‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCAACGCa                                  >  2:910119/1‑110 (MQ=255)

                                                                                                                                   cAACGGTC‑ATT‑TTTTT‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCAACGCa                                  <  1:910119/110‑1 (MQ=255)

                                                                                                                                   cAACGGTC‑ATT‑TTTTT‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCAACGCATAAGGCATGACAAGAAAACTTGCTAATACa    <  1:6891522/140‑1 (MQ=255)

                                                                                                                                   cAACGGTC‑ATT‑TTTTT‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCAACGCATAAGGCATGACAAGAAAACTTGCTAATACa    <  1:7604226/140‑1 (MQ=255)

                                                                                                                                    accGGTC‑ATT‑TTTTT‑TGCAACCTCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCAACGCATAAGGCATGACAAGAAAACTTGCTAATACaa   <  1:8171021/138‑1 (MQ=255)

                                                                                                                                    aaCGGTC‑ATT‑TTTTT‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTCAAACCGCCCTGGTCATCTGCCAACGCATAAGGCATGACAAGAAAACTTGCTAATACaa   <  1:7078327/140‑1 (MQ=255)

GACGGCCGCAGGAATAACGACATTAATTTCACCGCTCTTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑A‑T‑TTTTT‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCAACGCATAAGGCATGACAAGAAAACTTGCTAATACAAT  >  NZ_CP025268/1629030‑1629301

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`