| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP025268 | 2,204,490 | (A)7→8 | pseudogene (175/3632 nt) | CXP41_RS11705 → | DUF4132 domain‑containing protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP025268 | 2,204,483 | 1 | . | A | 93.8% | 1983.8 / 103.3 | 549 | pseudogene (168/3632 nt) | CXP41_RS11705 | DUF4132 domain‑containing protein |
| Reads supporting (aligned to +/- strand): ref base . (20/14); new base A (258/256); total (278/271) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.78e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 591 total aligned reads displayed.
ATAACGCCCAACTGGAACTGAAATATAAAAAAGGCAAAACGCCGCTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAG‑‑AA‑AAAA‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGGCGGCGCTAGCCTGTATCGCGCA > NZ_CP025268/2204344‑2204619 | aaCGCCCATCTGGAACTGAAATATAAAAAAGGCAAAACGCCGCTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAgaag‑‑aa < 2:9487567/140‑1 (MQ=255) aCGCCCAACTGGAACTGAAATATAAAAAAGGCAAAACGCCGCTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAG‑‑aa‑a < 1:3825966/140‑1 (MQ=255) gCCCAACTGGAACTGAAATATAAAAAAGGCAAAACGCCGCTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAG‑‑aa‑aaa < 1:2608134/140‑1 (MQ=255) ccAACTGGAACTGAAATATAAAAAAGGCAAAACGCCGCTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAG‑‑aa‑aaaa‑a > 1:4186915/1‑140 (MQ=255) aaCTGGAACTGAAATATAAAAAAGGCAAAACGCCGCTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAG‑‑aa‑aaaa‑aac < 1:4015083/140‑3 (MQ=255) acagcctcTGAAAGATAAAAAATGCAAAACGCCGCTCAGACATCGTCGATGGCCCGGCGAACCAGTGTCCGTTATCACTGTAAGTCTCATCCAGACAATGGGTGATGAATTGCTACAAAAATCTGAGAAG‑‑AATAAAA‑ACa < 2:6717537/133‑1 (MQ=255) aCTGGACCTGAAATATAAAAAAGGCAAAACGCCGCTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGACTTGCTACAAAAAGCTGAGAAG‑‑aa‑aaaa‑aaca > 2:1721956/1‑137 (MQ=255) gAACTGAAATATAAAAAAGGCAAAACGCCGCTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGA‑AA‑AAAA‑ACATTGt < 2:10922559/140‑1 (MQ=255) cTGAAATATAAAAAAGGCAAAACGCCGCTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGA‑AA‑AAAA‑ACATTGTCTg < 2:11344932/140‑1 (MQ=255) aaTATAAAAAAGGCAAAACGCCGCTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACCTTGGGTGATGAATTGCTACAAAAAGCTGAGAAGA‑AA‑AAAA‑ACATTGTCTGGCGt > 1:9777044/1‑140 (MQ=255) ataAAAAAGGCAAAACGCCGCTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGA‑AA‑AAAA‑ACATTGTCTGGCGTTAt > 1:9206492/1‑140 (MQ=255) ataAAAAAGGCAAAACGCCGCTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGA‑AA‑AAAA‑ACATTGTCTGGCGTTAt < 1:1837322/140‑1 (MQ=255) ataAAAAAGGCAAAACGCCGCTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGA‑AA‑AAAA‑ACAGTGTCTGGCGTTAt > 1:1456702/1‑140 (MQ=255) aaaaGGCAAAACGCCGCTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGA‑AA‑AAAA‑ACATTGTCTGGCGTTATgaga > 1:8832213/1‑140 (MQ=255) aaaGGCAACACGCCGCTCCGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACGGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGA‑AA‑AAAA‑ACATTGTCTGGCGTTATGAGaa < 1:5354628/140‑1 (MQ=255) aaGGCAAAACGCCGCTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGA‑AA‑AAAA‑ACATTGTCTGGCGTTATGAGAAt > 1:7147163/1‑140 (MQ=255) aaGGCAAAACGCCGCTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGA‑AA‑AAAA‑ACATTGTCTGGCGTTATGAGAAt > 2:443733/1‑140 (MQ=255) aGGCAAAACGCCGCTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGA‑AA‑AAAA‑ACATTGTCTGGCGTTATGAGAAtt > 1:2177212/1‑140 (MQ=255) aaCGCCGCTCAGTCATCGTCGCTGGCCGGGCGAATCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGTGTGATGAATTGCTACAAAAAGCTGAGAAGA‑AA‑AAAA‑ACATTGTCTGGCGTTATGAGAATTTTTCAc < 1:6238901/140‑1 (MQ=255) aaCGCCGCTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAAGTGCTACAAAAAGCTGAGAAGA‑AA‑AAAA‑ACATTGTCTGGCGTTATGAGAATTTTTCAc < 1:15753/140‑1 (MQ=255) tCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGA‑AA‑AAAA‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTgg < 1:9398270/140‑1 (MQ=255) cATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGA‑AA‑AAAA‑AGATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTc < 2:3137185/140‑1 (MQ=255) aTCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGA‑AA‑AAAA‑ACATTGTCTGGCGTGATGAGAATTTTTCAGTGGAGTGGCAGTcc > 2:2875612/1‑140 (MQ=255) gtcgCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGA‑AA‑AAAA‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGcc < 1:6782975/140‑1 (MQ=255) tcgCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGA‑AA‑AAAA‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCa < 2:2060747/140‑1 (MQ=255) tcgCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGA‑AA‑AAAA‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCa < 1:7376164/140‑1 (MQ=255) tcgCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGA‑AA‑AAAA‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCa < 2:7309002/140‑1 (MQ=255) gCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGGCATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGA‑AA‑AAAA‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATc > 1:8362008/1‑140 (MQ=255) tGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGA‑AA‑AAAA‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCAc > 2:4907267/1‑140 (MQ=255) tGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGA‑AA‑AAAA‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCAc > 1:8584935/1‑140 (MQ=255) gCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGA‑AA‑AAAA‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGc < 1:299003/140‑1 (MQ=255) ccGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGA‑AA‑AAAA‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCa < 2:46428/140‑1 (MQ=255) ccGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGA‑AA‑AAAA‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCa < 2:8452296/140‑1 (MQ=255) gggCGAACCAGTGTCCTTTATCACTTGATGTCTAATCCAGACATTGGGTGATGAATTTCTACAAAAAGCTTAGAAGA‑AA‑AAAA‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTTGCAGTCAGCCATCACGCAgg < 2:3234215/140‑1 (MQ=255) gCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGA‑AA‑AAAA‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGcc < 2:4216222/140‑1 (MQ=255) gCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGA‑AA‑AAAA‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGcc > 2:11543266/1‑140 (MQ=255) gCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGA‑AA‑AAAA‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGcc < 2:9156473/140‑1 (MQ=255) cGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGA‑AA‑AAAA‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCa < 1:6473142/140‑1 (MQ=255) cGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGA‑AA‑AAAA‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCa < 2:8234333/140‑1 (MQ=255) aaCCAGTGTCCGTTATCACTGGAAGTCTCATCCAGCCATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGA‑AA‑AAAA‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCATTCCGCCATCACGCAGGCCATc < 2:7160909/140‑1 (MQ=255) aaCCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGA‑AA‑AAAA‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATc > 2:1001954/1‑140 (MQ=255) tgtCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGA‑AA‑AAAA‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTg > 1:5032242/1‑140 (MQ=255) gtCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGA‑AA‑AAAA‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGa > 1:10566559/1‑140 (MQ=255) gTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGA‑AA‑AAAA‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCgg > 1:11309608/1‑140 (MQ=255) ttATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGA‑AA‑AAAA‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGc > 1:7985545/1‑140 (MQ=255) tATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGA‑AA‑AAAA‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCg > 2:1384386/1‑140 (MQ=255) tATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGA‑AA‑AAAA‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCg < 2:8603700/140‑1 (MQ=255) tATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGA‑AA‑AAAA‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCg < 1:356834/140‑1 (MQ=255) tCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGA‑AA‑AAAA‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGaa < 1:10013572/140‑1 (MQ=255) cACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGA‑AA‑AAAA‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAac > 2:5146526/1‑140 (MQ=255) cTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGA‑AA‑AAAA‑ACATTGTCTGGCGTTATga < 1:3709154/79‑1 (MQ=255) cTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGA‑AA‑AAAA‑ACATTGTCTGGCGTTATga > 2:3709154/1‑79 (MQ=255) cTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGA‑AA‑AAAA‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGGCATCACGCAGGCCAGAAACATGATCGGCGAacac > 2:7001444/1‑140 (MQ=255) cTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGA‑AA‑AAAA‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAacac > 2:10360328/1‑140 (MQ=255) ggAAGTCTCATCCAGACATTGGGTGCTGACTTGCTACAAAACGCTGAGAAGA‑AA‑AAAA‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACaa < 2:10613048/140‑1 (MQ=255) ggAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGA‑AA‑AAAA‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACaa < 1:3212364/140‑1 (MQ=255) ggAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGA‑AA‑AAAA‑ACATTGTCTGGCGTGATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCAGCCACTTGATCGGCGACCACaa > 2:8917807/1‑140 (MQ=255) gAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGA‑AA‑AAAA‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACaaa < 2:225401/140‑1 (MQ=255) tctcATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGA‑AA‑AAAA‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCt > 1:4308207/1‑140 (MQ=255) tctcATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGA‑AA‑AAAA‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCt > 2:1835235/1‑140 (MQ=255) tctcATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGA‑AA‑AAAA‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCt > 2:296725/1‑140 (MQ=255) tctcATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGA‑AA‑AAAA‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCt > 2:6635033/1‑140 (MQ=255) tctcATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGA‑AA‑AAAA‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCt > 1:11488547/1‑140 (MQ=255) tctcATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGA‑AA‑AAAA‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCt > 1:6979662/1‑140 (MQ=255) tctcATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGA‑AA‑AAAA‑ACAGTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCt < 1:4469538/140‑1 (MQ=255) tCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGA‑AA‑AAAA‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCTATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATc < 1:11094192/140‑1 (MQ=255) tCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAGA‑AA‑AAAA‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATc < 2:5686321/140‑1 (MQ=255) aGACATTGGGTGATGACTTGCTACAAAAAGCTGAGAAG‑‑AACAAAA‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAACCCCTCAATcccg < 1:765939/140‑1 (MQ=255) cATTGGGTGATGAATTGCTACAAACAGCTGAGAAGA‑AA‑AAAA‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGACCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATcccggcc < 1:3430732/140‑1 (MQ=255) gggTGATGAATTGCTACAAAAAGCTGAGAAGA‑AA‑AAAA‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATcccggcccggc > 2:2746493/1‑139 (MQ=255) ggTGATGAATTGCTACAAAAAGCTGAGAAGA‑AA‑AAAA‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGTCGAACACAAACCCTCAATCCCGGCCCGGAc > 2:6000038/1‑140 (MQ=255) ggTGATGAATTGCTACAAAAAGCTGAGAAGA‑AA‑AAAA‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGAc > 1:5717685/1‑140 (MQ=255) ggTGATGAATTGCTACAAAAAGCTGAGAAGA‑AA‑AAAA‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGAc > 2:11189554/1‑140 (MQ=255) gatgaATTGCTACAACAAGCTGAGAAGA‑AA‑AAAA‑ACAGTGTCTGGCGTTAGGCGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAAt < 2:2573118/140‑1 (MQ=255) atgaATTGCTACAAAAAGCTGAGAAGA‑AA‑AAAA‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATg > 2:7980099/1‑140 (MQ=255) gaATTGCTACAAAAAGCTGAGAAGA‑AA‑AAAA‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATggc > 1:10723593/1‑140 (MQ=255) tGCTACAAACAGCTGAGAAGA‑AA‑AAAA‑ACATTGTCTGTCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGgcggcg < 2:10224836/140‑1 (MQ=255) tGCTACAAAAAGCTGGGAAGA‑AA‑AAAA‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGgcggcg < 1:2849780/140‑1 (MQ=255) tGCTACAAAAAGCTGAGAAGA‑AA‑AAAA‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCTCGCAGGCCATCAACTTGATCGGCGAACACAAACCCGCAATCCCGGCCCGGACAATGgcggcg > 2:5465068/1‑140 (MQ=255) tGCTACAAAAAGCTGAGAAGA‑AA‑AAAA‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGgcggcg < 2:8807088/140‑1 (MQ=255) tGCTACAAAAAGCTGAGAAGA‑AA‑AAAA‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGgcggcg < 2:7554657/140‑1 (MQ=255) tGCTACAAAAAGCTGAGAAGA‑AA‑AAAA‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGgcggcg < 1:9596642/140‑1 (MQ=255) tGCTACAAAAAGCTGAGAAGA‑AA‑AAAA‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGgcggcg < 2:334582/140‑1 (MQ=255) tGCTACAAAAAGCTGAGAAGA‑AA‑AAAA‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGgcggcg < 2:3762911/140‑1 (MQ=255) tGCTACAAAAAGCTGAGAAGA‑AA‑AAAA‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGgcggcg < 2:634381/140‑1 (MQ=255) tGCTACAAAAAGCTGAGAAGA‑AA‑AAAA‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGgcggcg < 1:8736908/140‑1 (MQ=255) tGCTACAAAAAGCTGAGAAGA‑AA‑AAAA‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGgcggcg < 1:4705750/140‑1 (MQ=255) tGCTACAAAAAGCTGAGAAGA‑AA‑AAAA‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGgcggcg < 1:8949737/140‑1 (MQ=255) tGCTACAAAAAGCTGAGAAGA‑AA‑AAAA‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGgcggcg < 1:273810/140‑1 (MQ=255) tGCTACAAAAAGCTGAGAAGA‑AA‑AAAA‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGgcggcg < 2:4034092/140‑1 (MQ=255) tGCTACAAAAAGCTGAGAAGA‑AA‑AAAA‑ACAGTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGgcggcg < 1:6023768/140‑1 (MQ=255) gCTACAAAAAGCTGAGAAGAAAA‑AAAA‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGgcggcg < 1:10123621/140‑1 (MQ=255) cTACCAAATGCTGAGAAGA‑AA‑AAAA‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACGCAAACCCTCAATCGCGGCCCGGACAAGGGCGgcgcg > 2:1258530/1‑139 (MQ=255) gCTGAGAAGA‑AA‑AAAA‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGGCGGCGCTAGCCTGTAt < 1:8231539/140‑1 (MQ=255) cTGAGAAGA‑AA‑AAAA‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGgcggcg < 2:1554035/128‑1 (MQ=255) cTGAGAAGA‑AA‑AAAA‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGGCGGCGCTAGCCTGTATc > 1:1321611/1‑140 (MQ=255) tGAGAAGA‑AA‑AAAA‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGGCGGCGCTAGCCTGTATcg < 1:7825145/140‑1 (MQ=255) tGAGAAGA‑AA‑AAAA‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGGCGGCGCTAGCCTGTATcg < 1:10263291/140‑1 (MQ=255) agaaga‑AA‑AAAA‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGGCGGCGCTAGCCTGTATcgcg < 2:7781725/140‑1 (MQ=255) aag‑‑aa‑AAAATACATTGTCTGGCGTGATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCATCAATCCCGGCCCGGACAATGGCGGCGCTAGCCTGTATCgcgcc > 2:3922426/1‑139 (MQ=255) | ATAACGCCCAACTGGAACTGAAATATAAAAAAGGCAAAACGCCGCTCAGTCATCGTCGCTGGCCGGGCGAACCAGTGTCCGTTATCACTGGAAGTCTCATCCAGACATTGGGTGATGAATTGCTACAAAAAGCTGAGAAG‑‑AA‑AAAA‑ACATTGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAACCCTCAATCCCGGCCCGGACAATGGCGGCGCTAGCCTGTATCGCGCA > NZ_CP025268/2204344‑2204619 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |