| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP025268 | 3,509,139 | +C | pseudogene (137/878 nt) | php ← | phosphotriesterase‑related protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP025268 | 3,509,136 | 1 | . | C | 96.6% | 3180.6 / 92.0 | 943 | pseudogene (140/878 nt) | php | phosphotriesterase‑related protein |
| Reads supporting (aligned to +/- strand): ref base . (12/20); new base C (434/476); total (447/496) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.84e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 1018 total aligned reads displayed.
CACATGTTCCGGGAAAAACGCGTCCTGGTAATAACCGGTACAGGCCACCACGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACG‑CCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAATATGCAGATGCTCATGGGCGAGGGTGTAACCCGTCGGATCAAAA > NZ_CP025268/3508998‑3509270 | tGTTCCGGGAAAAACGCGTCCTGGTAATAACCGGTACAGGCCACCACGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACG‑ccccg < 2:4760911/140‑3 (MQ=255) cGGGAAAAACGCGTCCTGGTAATAACCGGTACAGGCCACCACGTTGATCACCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGtca < 2:5081221/140‑1 (MQ=255) gggAAAAACGCGTCCTGGTAATAACCGGTACAGGCCACCACGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGtcat < 1:9997095/140‑1 (MQ=255) aaaCGCGTCCTGGTAATAACCGGTACAGGCCACCACGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGt < 2:8781399/140‑1 (MQ=255) aaaCGCCTCCTGGTACTAACCGGTACAGGCCACCACGTTGATCCCCGACGCGCGCATTACATCAAGCATAACTTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGt < 2:10632114/140‑1 (MQ=255) ggTAATAACCGGTACAGGCCACCACGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTcc < 1:2538504/140‑1 (MQ=255) aataaCCGGTACAGGCCACCACGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTgg < 1:953297/140‑1 (MQ=255) aataaCCGGTACAGGCCACCACGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTgg < 2:7644695/140‑1 (MQ=255) taaCCGGTACAGGCCACCACGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCa < 2:4009017/140‑1 (MQ=255) aCCGGTACAGGCCACCACGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCaaa > 2:6894573/1‑140 (MQ=255) aCCGGTACAGGCCACCACGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCaaa < 2:594548/140‑1 (MQ=255) aCCGGTACAGGCCACCACGTTGATCCCAGTCTCGCTCATTACATCAAGCATATATTGAGCAGTGCGCCACATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATATCCTGGCaaa < 2:2064342/140‑1 (MQ=255) cGGTACAGGCCACCACGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATg < 2:9283018/140‑1 (MQ=255) cGGTACAGGCCACCACGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATg < 2:1110246/140‑1 (MQ=255) cGGTACAGGCCACCACGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATg > 2:3790337/1‑140 (MQ=255) gTACAGGCCACCACGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGaa > 1:6055832/1‑140 (MQ=255) gTACAGGCCACCACGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGaa > 1:5367894/1‑140 (MQ=255) gTACAGGCCACCACGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGaa > 2:324947/1‑140 (MQ=255) tACAGGCCACCACGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAAc < 1:7931202/140‑1 (MQ=255) tACAGGCCACCACGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAAc < 1:11387910/140‑1 (MQ=255) tACAGGCCACCACGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAAc < 1:3774929/140‑1 (MQ=255) tACAGGCCACCACGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAAc < 2:7421090/140‑1 (MQ=255) tACAGGCCACCACGTAGATCCCCGTCTCGCGCATTACATCAAGCATAAAGTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAAGCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAAc < 2:8600125/140‑1 (MQ=255) gaCAGGCCACCACGCTGATCCCCGTCTCGCGCATTACATCCAGCATAACTGGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAAc < 1:11187806/139‑1 (MQ=255) aGGCCACCACGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGGCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCa < 2:11483100/140‑1 (MQ=255) aGGCCACCACGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCa > 2:1517464/1‑140 (MQ=255) ggCCACCACGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCAt > 2:3445374/1‑140 (MQ=255) gCCACCACGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATa > 2:5341487/1‑140 (MQ=255) gCCACCACGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATa > 2:4235986/1‑140 (MQ=255) caccacGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACt > 1:2331158/1‑140 (MQ=255) caccacGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCCCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACt > 1:8208869/1‑140 (MQ=255) accacGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTg < 2:1304374/140‑1 (MQ=255) accacGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTg > 1:4673860/1‑140 (MQ=255) ccacGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGa > 1:10211613/1‑140 (MQ=255) ccacGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGa > 1:8488881/1‑140 (MQ=255) cacGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCACATGAACGCATACTGag > 2:2851956/1‑139 (MQ=255) cacGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGAt > 1:6983018/1‑140 (MQ=255) cacGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGAt < 1:3599980/140‑1 (MQ=255) cacGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGAt > 1:10407880/1‑140 (MQ=255) cacGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGAt > 1:8693275/1‑140 (MQ=255) tGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAgg > 1:4841928/1‑140 (MQ=255) gATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAggc > 2:6701510/1‑140 (MQ=255) cccGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCa > 1:1575561/1‑140 (MQ=255) cccGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCa < 1:5835134/140‑1 (MQ=255) gTCTCGCGGATTAGATCAAGCATAAATTGCGCATTGCGCCCCATATAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTc > 1:6195200/1‑140 (MQ=255) cgcgCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACg > 1:1789161/1‑140 (MQ=255) cgcATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAATGCGGCAGTCCACgtt > 2:5616882/1‑140 (MQ=255) cgcATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACG‑CCCAGGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACgtt > 2:121055/1‑140 (MQ=255) cgcATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCACAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACgtt > 2:9134714/1‑140 (MQ=255) tACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGtttt < 2:2342630/140‑1 (MQ=255) aaGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGc > 2:3025206/1‑140 (MQ=255) gCATAAATTTCGCTTTGCGCCCCATGTAACTGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTTGCAAATGAACGCATACTGATCAAGGCGGCAGTCAACGTTGTTTTTAAAGCCg < 2:6132284/140‑1 (MQ=255) gCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCg > 1:10596312/1‑140 (MQ=255) gCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCg < 1:1993340/140‑1 (MQ=255) gCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCg > 2:4408170/1‑140 (MQ=255) aTAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGga < 1:10045724/140‑1 (MQ=255) aTAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGga < 2:1794505/140‑1 (MQ=255) aTAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGga < 2:10944582/140‑1 (MQ=255) aTAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGga > 1:7571878/1‑140 (MQ=255) aaaTTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGgaga < 2:8415937/140‑1 (MQ=255) aaaTTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGgaga < 1:4322334/140‑1 (MQ=255) aaaTTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGGTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGgaga < 1:728212/140‑1 (MQ=255) aaaGTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGgaga < 1:2777730/140‑1 (MQ=255) ttgcgcattgcgcCCCCTGTCACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGAt < 2:7808774/140‑1 (MQ=255) ttgcgcattgcgcCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGAt < 2:2545492/140‑1 (MQ=255) ttgcgcattgcgcCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGAt < 1:2142894/140‑1 (MQ=255) ttgcgcattgcgcCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACG‑CCCGGGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGAt < 1:2910888/140‑1 (MQ=255) ttgcgcagtgcgcCCCCTGTAACGGGTGGACAGCTCAATCACATGACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTTGCAAATGCACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGAt < 2:7228988/140‑1 (MQ=255) cgcattgcgcCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCaa > 1:11632802/1‑140 (MQ=255) cgcattgcgcCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCaa > 1:9873519/1‑140 (MQ=255) cgcattgcgcCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCaa > 2:4108409/1‑140 (MQ=255) cgcattgcgcCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTGTTAATGCCGGAGAGATCat > 1:8380100/1‑139 (MQ=255) cattgcgcCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCGCCTGGCAAATGAACGCATACTGATCACGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAata < 1:3417050/140‑1 (MQ=255) tgcgcCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAATATGc > 2:8142659/1‑140 (MQ=255) cgcCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAATATGCAg < 1:4178055/140‑1 (MQ=255) ccATGTAACGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAATATGCAGATGc < 2:6455322/140‑1 (MQ=255) aaCGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAATATGCAGATGCTCATgg > 2:708837/1‑140 (MQ=255) aCGGTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAATATGCAGATGCTCATggg < 1:1414942/140‑1 (MQ=255) cGGTTGGTCATCTCACTCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAATATGCAGATGCTCATGGGc < 1:6792489/140‑1 (MQ=255) ggTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAATATGCAGATGCTCATGGGCg < 1:6513088/140‑1 (MQ=255) ggTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAATATGCAGATGCTCATGGGCg < 1:9698240/140‑1 (MQ=255) gTTGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAATATGCAGATGCTCATGGGCGa < 2:10357345/140‑1 (MQ=255) ttGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAATATGCAGATGCTCATGGGCGAg > 1:3168771/1‑140 (MQ=255) ttGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAATATGCAGATGCTCATGGGCGAg > 1:5550471/1‑140 (MQ=255) ttGGTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAATATGCAGATGCTCATGGGCGAg > 1:2397632/1‑140 (MQ=255) ggTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGga < 1:7470096/108‑1 (MQ=255) ggTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAATATGCAGATGCTCATGGGCGAggg > 2:11319896/1‑140 (MQ=255) ggTCATCTCAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAATATGCAGATGCTCAGGGGCGAggg > 1:10714809/1‑140 (MQ=255) tctcAATCACATTACGCACGCCCC‑GGGTCATCAGGTCGGTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAATATGCAGATGCTCATGGGCGAGGGTGTaa < 1:5211146/140‑1 (MQ=255) aTCACATTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAACTGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAATATGCAGATGCTCATGGGCGAGGGTGTAACCCGt < 1:4952206/140‑1 (MQ=255) caTTACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAATATGCAGATGCTCATGGGCGAGGGTGTAACCCGTCGGa < 1:4494114/140‑1 (MQ=255) ttACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAATATGCAGATGCTCATGGGCGAGGGTGTAACCCGTCGGATc > 2:9815220/1‑140 (MQ=255) ttACGCACGCCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAATATGCAGATGCTCAGGGGCGAGGGTGTAACCCGTCGGATc > 1:3953365/1‑140 (MQ=255) acgcacgcCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAATATGCAGATGCTCATGGGCGAGGGTGTAACCCGTCGGATCaa < 1:9286450/140‑1 (MQ=255) acgcacgcCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAATATGCAGATGCTCATGGGCGAGGGTGTAACCCGTCGGATCaa < 1:9004239/140‑1 (MQ=255) acgcacgcCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAATATGCAGATGCTCATGGGCGAGGGTGTAACCCGTCGGATCaa < 2:8960206/140‑1 (MQ=255) acgcacgcCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAATATGCAGATGCTCATGGGCGAGGGTGTAACCCGTCGGATCaa < 1:7800235/140‑1 (MQ=255) cgcacgcCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAATATGCAGATGCTCATGGGCGAGGGTGTAACCCGTCGGATCaaa > 2:6251603/1‑140 (MQ=255) gcacgcCCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAATATGCAGATGCTCATGGGCGAGGGTGTAACCCGTCGGATCaaaa < 1:10958307/140‑1 (MQ=255) gcacgcCCC‑GGGTCATCAGGTCGGACATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAATATGCAGATGCTCATGGGCGAGGGTGTAACCCGTCGGATCaaaa < 2:9608843/140‑1 (MQ=255) | CACATGTTCCGGGAAAAACGCGTCCTGGTAATAACCGGTACAGGCCACCACGTTGATCCCCGTCTCGCGCATTACATCAAGCATAAATTGCGCATTGCGCCCCATGTAACGGTTGGTCATCTCAATCACATTACGCACG‑CCC‑GGGTCATCAGGTCGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAATATGCAGATGCTCATGGGCGAGGGTGTAACCCGTCGGATCAAAA > NZ_CP025268/3508998‑3509270 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |