| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP025268 | 2,233,285 | 0 | T | A | 20.9% | 402.0 / 23.2 | 202 | intergenic (+185/+188) | yohP/dusC | small membrane protein YohP/tRNA dihydrouridine(16) synthase DusC |
| Reads supporting (aligned to +/- strand): ref base T (86/62); new base A (39/0); total (140/62) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.68e-08 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 204 total aligned reads displayed.
TCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTAT‑CCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGTGGGCTGCCCCGGCCTTCAGGGAACGCCTCGGCAATTTTGACGCCACCAAACAACCGTGCGGC > NZ_CP025268/2233148‑2233424 | tctcATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATCATCACTGGCGCAAGGAGCGC‑GCACGGGGCGGCCAAAACCCCCCCCCCCCAGCACCCCCGGGCGCTTGCGAACACAATCGCCCCTGCGCGGTGTCcgcg > 2:7988782/1‑140 (MQ=18) tcATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCCAAAGCCCCCCCCCCCCGCACCCCCCCGCAAATGCCAAAAAAAAAACCCCAGCGCGGTGCCCACGGc > 1:1814005/1‑140 (MQ=16) cATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCATGGGGGGGCCAAAACCCGCCCCCCCCAACACCCCCCGGCACTGGCGAAAAAAATAACCCCTGCGCGGTGCCCACGGcg > 2:4158161/1‑139 (MQ=18) cATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAAACCCCCCCGCCCCCAGCACCCCCCGGCTAATGCCGACAAAAACCCCGCAGCGCCGGGGCCTCCGCt > 1:6926390/1‑140 (MQ=18) tCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGCGCGC‑GCTGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTa < 1:7961267/140‑1 (MQ=255) tCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTa < 1:1953430/140‑1 (MQ=255) tGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCAGCACCCCCGGGCTCTGGCGAACAAAATAGCCGCTGCGCGGTGCCCTCGGCTTAT‑cc > 2:11487623/1‑140 (MQ=255) ttGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGGGGCCCATAGCCGCCCCCCCCCGCACCCCCCGGCTCAGGCGAACAAAAAAGCCCCGGCGCGGTGCCCACGGCGTaaacca > 2:2143302/1‑135 (MQ=18) ttGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCCCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCCCTGCGCGGTGCCCACCGCTTAT‑acca > 2:8245118/1‑139 (MQ=18) gcgcTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCCGGGGGGGGCCCAAACCCCCCCCCCCCCGCACCCCCCCGCGCAGGGGAAAAAAAAAACCCCAGAGCGGGGGCCCCGGCTTAT‑ACCCTa > 1:11412340/1‑140 (MQ=255) gcgcTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCCATAGCCGCCGCCCCCAGCACCCCCCGGCACAGGCGCACAAAAACGCCGCAGCGCGGTGCCCACGGCTTaaaccata > 2:9283944/1‑133 (MQ=18) gcgcTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTAT‑CCCTTa < 1:9777986/140‑1 (MQ=255) gcgcTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTAT‑CCCTTa < 1:9283944/140‑1 (MQ=255) cTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGACCAAAATCGCCGCTGCGCGGTGCCCTCGGCTTAT‑CCCTTACgg > 2:7839101/1‑140 (MQ=255) ttCATGTGCATTGCTTCATATAATCACGGGCGCATGGAGCGC‑GCTGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTAT‑CCCTTACGGCTAcc < 1:52489/139‑1 (MQ=255) gTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATAGCCGCCGCCCCCAGCACCCCCCGGCGAGGGCGCACAAAAACGCCGCGGCGCGGGGCCCGCGGCGTTT‑CCCATACGGcgaac > 2:10814906/1‑136 (MQ=17) gtgCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTAT‑CCCTTACGGCTACCGGGTc < 2:10102090/140‑1 (MQ=255) tgCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATATCCGCCGCCCCCACCACCCCCCGGCTCTGGCGACCAAAATACCCGCTGCGCGGTGCCCACGGCGTAT‑CCCGTACTGCTACCGCGTCg > 2:748512/1‑140 (MQ=14) tgCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAAAAGCCGCCCCCCCCAGCACCCCCCGGCGCTGGCGCACCAAAAAGCCGCGGCGCGGTGCCCGCGGCTTAA‑ACCATAAGGCTACCcgggag > 2:5846238/1‑137 (MQ=9) cATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTAT‑CCCTTACGGCTACCGGGTCggg < 2:8499494/140‑1 (MQ=255) cATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGCCCGCCAAAAGCCCCCGCCCCCAGCACCCCCGGGCACAGGCGAACAAAATAGACGCAGAGCGGTGCCCACGGCATAT‑AACATAAGGCTAACCGGTCggg > 2:178860/1‑140 (MQ=9) cATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGACGGCCCAACGCCGCCGCCCCCAGCACCCCCCGGCTCAGGCGAACAAAAACGCCGCAGCGCGGTGCCCACCGCTTAT‑ACCCTACCGCAACCGCGTCggg > 2:10817851/1‑140 (MQ=14) tGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCCCTGCGCGGTGCCCTCGGCTTAT‑CCCTTTCGGCTACCGGGTCGGgcgc > 2:8708185/1‑140 (MQ=255) tGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATAGCCGCTGCGCGGTGCCCGCGGCATAA‑CCCATACCGCGACCGGGTCGGgcgc > 2:10646332/1‑140 (MQ=14) tGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCAGCACCCCCCGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCACGGCTTAT‑ACCATACGGCTACCCGGTCGGgcgc > 2:7664055/1‑140 (MQ=14) tGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATAGCCGCCGCCCCCAGCACCCCCGGGCGCTGGCGAACAAAAAAGCCGCTGCGCGGTTCCCACGGCTTAT‑CCCTTACGGCTACCGGGTCGGgcgc > 2:6365283/1‑140 (MQ=14) tGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAAAACCCGCCCCCCCCAGCCCCCCCCGGCACATGCGAAAAAAAAAGCCCCAGCGCCGTGCCCACCGCGTAA‑CCCATAACGCAACCCGGTCGGgcgc > 2:5562345/1‑140 (MQ=9) cTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAAAACCCGCCGCCCCCAGCACCCCCCGGCACAGGCGAACAAAAAACCCCCGGCGCGGTGCCCACGGCTTAT‑ACCATAAGGCAACCCGGTCGGGcgcgc > 2:4687820/1‑139 (MQ=9) cATATAATCACTGGCGCAAGGAGCGCGGCGGGGGGGGGCCAAAC‑CCCCCCCCCCCAGCCCCCCCCGGGGCAGGCGACAAAAAAACCCCCAGCGCGGGGCCCACGGCGGAT‑CACGTACCGCGACCCGGGCGGGGGCGCggg > 1:8576982/1‑139 (MQ=255) taATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTAT‑CCCTTACGGCTACCGGGTCGGGCGCGAGGTAACa < 2:10922943/140‑1 (MQ=35) taATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTAT‑CCCTTACGGCTACCGGGTCGGGCGCGAGGTAACa < 2:8872641/140‑1 (MQ=35) taATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTAT‑CCCTTACGGCTACCGGGTCGGGCGCGAGGTAACa < 2:7926054/140‑1 (MQ=35) aaccACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTAT‑CCCTTACGGCTACCGGGTCGGGCGCGAGGTAACAt < 1:2073444/137‑1 (MQ=14) aaTCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTAT‑CCCTTACGGCTACCGGGTCGGGCGCGAGGTAACAt < 2:611363/140‑1 (MQ=34) tCACTGGCGCAAGGAGCGC‑GCCGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCCGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCACGGCTTAT‑CCCATACGGCTACCCGGTCGGGCGCGAGGTAACAAcc > 2:11530570/1‑140 (MQ=11) tCACTGGCGCAAGGAGCGC‑GCCGGGGGCGGCCAAAATCCGCCCCCCCCAGCACCCCCCGGCTCAGGCGAACAAAAACGCCCCAGCGCGGTGCGCACGGCTGAT‑ACCTTACGGCTAACCGGTCGGGGGCGAGGTaaaaaac > 2:495886/1‑135 (MQ=2) tCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCCAACGCCGCCCCCCCCAGCACCCCCCGGCTCAGGCGAACAAAAACGCCGCTGCGCGGTGCCCTCGGGATAT‑ACCATACGGCTACCCGGTCGGGCGCGAGGGAACaaac > 2:3812913/1‑137 (MQ=11) tCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCCAAAGCCCCCCCCCCCAACACCCCCCCGCACTGGCGAAAAAAAAAGCCGCTGCGCGGTGGCCCCCGCGTAA‑ACCAAAACGCAACCCCGTCGGGCGCGAGGGAACaaac > 2:4632805/1‑137 (MQ=2) tCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCAGCACCCCCGGGCTCAGGCGAACAAAAAAGCCGCTGCGCGGTGCCCACGGCTTAT‑CCCGTAAGGCTACCCGGTCGGGCGCGAGGTAACATcc > 2:11201076/1‑140 (MQ=11) tCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCCCCGCCGCCCCCAGCACCCCCGGGCTCTGGCGAACAAAATACCCCCTGCCCGGTGCCCACGGCTTAT‑CCCATAAGGCTACCCGGTCGGGCGCGAGGTAAcctac > 2:7620224/1‑136 (MQ=11) tCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAAAAACCCCCCCCCCCACCACCCCCCGGCGAATGCGAACAAAAAACCCCCGGCGCGGGGGCCCCGGCGTATACCCTAACGCAAACCGGG‑CGGGCGCGAGGTAACaaac > 2:4589530/1‑137 (MQ=2) aaGGAGCGC‑GCAGGGGGCGGCCACTCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTAT‑CCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAAcg < 1:6258960/140‑1 (MQ=17) ggAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTAT‑CCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAAcgcg < 2:5594884/140‑1 (MQ=32) gcgc‑gcAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTAT‑CCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGccc < 2:6755509/140‑1 (MQ=32) cgc‑gcAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTAT‑CCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCt < 1:4334754/140‑1 (MQ=32) cgc‑gcAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTAT‑CCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCt < 1:10654269/140‑1 (MQ=32) cgc‑gcAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTAT‑CCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCt < 1:1303696/140‑1 (MQ=32) cgc‑gcAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTAT‑CCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCt < 2:1400504/140‑1 (MQ=32) cgc‑gcAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTAT‑CCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCt < 1:9511960/140‑1 (MQ=32) cgc‑gcAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTAT‑CCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCt < 1:7216800/140‑1 (MQ=32) cgc‑gcAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTAT‑CCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCt < 2:5636464/140‑1 (MQ=32) c‑gcAGGGGGCGGCCAATCGCCGCCGCCCCCAGCACCCCCCGGCTCTGGCGAACAAAATCGCCGCCGCGCGGTGCCCTCGGCTTAT‑CCCTTACGGCTACCCGGTCGGGCGCGAGGTAACAACCCAGTAAAACGCGCCCTCa > 2:6899438/1‑140 (MQ=11) cAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTAT‑CCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGc < 1:2650771/140‑1 (MQ=32) ggcggcCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTAT‑CCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCcaca < 2:3902261/140‑1 (MQ=32) cggcCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTAT‑CCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATc < 1:3484455/140‑1 (MQ=32) cggcCAATCGCCGCCGCCCCCTGCACCCCCCGGCTCTGGCGAACAAAATCGCCCCTGCGCGGTGCCCTCGGCGTAT‑CCCTTACGGCTACCCGGTCGGGCGCGAGGTAACAACCCAGTAAAACGCgcccacagcccacaac > 2:4371928/1‑138 (MQ=11) gcCAATCGCCGCCGCCACCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGACATCGGCTTAT‑ACCTTACGGCTACAGGGTAGGGCGCGATGTAACATCCATGTAAAACGCGCCCTCAGCCCACCTCCa > 2:1005420/1‑140 (MQ=11) ttCGCCGCCGCCCCCTGCACCACCGGGCTCTGGCGAACAACATCGCCGCTGCGCGGTGCCCGCGGCTTAT‑CCCTTACGGCTCCCGGGTAGGGCGCGAGGTAAACTCCCTGTAAAACGCGCCCTCAGCCCACCTCCAtgtg > 2:6792786/2‑140 (MQ=11) aTCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTAT‑CCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCAtgtg > 1:10451785/1‑140 (MQ=32) aTCGCCGCCGCCCCCTGCACCCCCGGGCACTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTAT‑CCCTTACGCCTACCGGGTCGGGCGCGAGGTAACAACCCTGTAAATCGCGCCCTCAGCCCACATCCAtgag > 2:1847864/1‑138 (MQ=11) cgccgccgcCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTAT‑CCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGTggg > 1:7840540/1‑140 (MQ=32) gccgccCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTAT‑CCCTTACGGCTCCCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGTGGGCTGc > 2:9458973/1‑140 (MQ=17) ccgccCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTAT‑CCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAATCGCGCCCTCAGCCCACATCCATGTGGGCTGcc > 1:7336410/1‑140 (MQ=17) ccgccCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTAT‑CCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGTGGGCTGcc < 1:1228816/140‑1 (MQ=32) cccTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTAT‑CCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGTGGGCTGCCCCGGc < 1:5846238/140‑1 (MQ=32) cTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTAT‑CCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGTGGGCTGCCCCGGCCt < 2:6593009/140‑1 (MQ=32) tGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTAT‑CCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGTGGGCTGCCCCGGCCtt > 2:11021638/1‑140 (MQ=32) tGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTAT‑CCCTAACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGTGGGCTGCCCCGGCCtt > 2:83132/1‑140 (MQ=17) cACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTAT‑CCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCATGTAAAACGCGCCCTCAGCCCACATCCATGTGGGCTGCCCCGGCCTTCa > 2:2845395/1‑140 (MQ=17) ccccGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTAT‑CCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGTGGGCTGCCCCGGCCTTCAggg > 2:359270/1‑140 (MQ=32) cccGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTAT‑CCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGTGGGCTGCCCCGGCCTTCAGGGa > 2:768556/1‑140 (MQ=32) ccGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTAT‑CCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGTGGGCTGCCCCGGCCTTCAGGGaa > 1:9881256/1‑140 (MQ=32) ccGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTAT‑CCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGTGGGCTGCCCCGGCCTTCAGGGaa > 2:8435380/1‑140 (MQ=32) cGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTAT‑CCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGTGGGCTGCCCCGGCCTTCAGGGAAc > 2:10764458/1‑140 (MQ=32) ggCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTAT‑CCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCCCATCCATGTGGGCTGCCCCGGCCTTCAGGGAACGc > 1:2048693/1‑140 (MQ=17) ggCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTAT‑CCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGTGGGCTGCCCCGGCCTTCAGGGACCGc > 2:2521987/1‑140 (MQ=17) ggCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTAT‑CCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGTGGGCTGCCCCGGCCTTCAGGGAACGc > 2:5456040/1‑140 (MQ=32) ggCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTAT‑CCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGTGGGCTGCCCCGGCCTTCAGGGAACGc > 1:1633528/1‑140 (MQ=32) ggCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTAT‑CCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGTGGGCTGCCCCGGCCTTCAGGGAACGc > 2:8166108/1‑140 (MQ=32) ctctGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTAT‑CCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGTGGGCTGCCCCGGCCTTCAGGGAACGCCt > 1:10039334/1‑140 (MQ=32) ctctGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTAT‑CCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGTGGGCTGCCCCGGCCTTCAGGGAACGCCt > 1:4653913/1‑140 (MQ=32) tGGCGAACAAAATCGCCGCTGCGCGGTGCGCTCGGCTTAT‑CCCTTACGGCTACCTGGTCGGGCGCGAGGTAACATCCCTGTAAATCGCGCCCTCAGCGCCCCTCCATGTGGGCTGCCCCGGCCTTCAGGGAACGCCTCgg > 2:9639155/1‑140 (MQ=11) tGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTAT‑CCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGTGGGCTGCCCCGGCCTTCAGGGAACGCCTCgg > 1:1558647/1‑140 (MQ=32) tGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTAT‑CCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCAGGTGGGCTGCCCCGGCCTTCAGGGAACGCCTCgg > 2:5881997/1‑140 (MQ=17) tGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTAT‑CCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCACTGTAAAACGCGCCCTCAGCCCACATCCATGTGGGCTGCCCCGGCCTTCAGGGAACGCCTCgg > 2:1993075/1‑140 (MQ=17) tGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTAT‑CCCTTACGGCTACCGGGTCGGGCGCGAGGGAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGTGGGCTGCCCCGGCCTTCAGGGAACGCCTCgg > 1:6458911/1‑140 (MQ=17) tGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTAT‑CCCTTACGGCTACCGGCTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGTGGGCTGCCCCGGCCTTCAGGGAACGCCTCgg > 1:7116245/1‑140 (MQ=17) gCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTAT‑CCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGTGGGCTGCCCCGGCCTTCAGGGAACGCCTCGGCa < 1:11493962/140‑1 (MQ=33) aaCAAAATCGCCGCTGCGCGGTGCCCTCGGCTTAT‑CCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGTGGGCTGCCCCGGCCTTCAGGGAACGCCTCGGCaagt > 2:7132467/1‑138 (MQ=18) aCAAAATCGCCGCTGCGCGGTGCCCTCGGCTTAT‑CCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGTGGGCTGCCCCGGCCTTCAGGGACCGCCTCGGCAAttt > 1:3934400/1‑140 (MQ=21) tCGCCGCTGCGCGGTGCCCTCGGCTTAT‑CCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGTGGGCTGCCCCGGCCTTCAGGGAACGCCTCGGCAATTTTGACGc < 2:6458911/140‑1 (MQ=34) tCGCCGCTGCGCGGTGCCCTCGGCTTAT‑CCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGTGGGCTGCCCCGGCCTTCAGGGAACGCCTCGGCAAGTTTGACGc > 1:7499388/1‑140 (MQ=21) tCGCCGCTGCGCGGTGCCCTAGGCTTAT‑CCCATAAGGCTACCGGGTCGGGCGCGAGGTAACATACCTGTAAAAAGCGCCCTCAGCCCACATCCAAGTTGGCTGCCCCGGCCTTCAGGGAACGCCTCGGCAATTTTGAAGc > 1:2389663/1‑140 (MQ=11) cTGCGCGGTGCCCTCGGCTTAT‑CCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGTGGGCTGCCCCGGCCTTCAGGGACCGCCTCGGCAATTTTGACGCCACCaa > 2:129027/1‑140 (MQ=21) cTGCGCGGTGCCCTCGGCTTAT‑CCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGTGGGCTGCCCCGGCCTTCAGGGACCGCCTCGGCAATTTTGACGCCACCaa > 2:570345/1‑140 (MQ=21) cTGCGCGGTGCCCTCGGCTTAT‑CCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGTGGGCTGCCCCGGCCTTCAGGGAACGCCTCGGCAATTTTGACGCCACCaa > 2:5195332/1‑140 (MQ=34) cgcgGTGCCCTCGGCTTAT‑CCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGTGGGCTGCCCCGGCCTTCAGGGAACGCCTCGGCAATTTTGACGCCACCAaaca < 2:5441211/140‑1 (MQ=37) gcgGTGCCCTCGGCTTAT‑CCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGTGGGCTGCCCCGGCCTTCAGGGAACGCCTCGGCAATTTTGACGCCACCAaacaa > 1:4861576/1‑140 (MQ=38) tGCCCTCGGCTTAT‑CCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGTGGGCTGCCCCGGCCTTCAGGGAACGCCTCGGCAATTTTGACGCCACCAAACAACCGt > 2:2660931/1‑140 (MQ=255) cccTCGGCTTAT‑CCCTTACGGCTACCGGGTCGGGCGCGAGGTAACa < 2:10410581/46‑1 (MQ=38) | TCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTAT‑CCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGTGGGCTGCCCCGGCCTTCAGGGAACGCCTCGGCAATTTTGACGCCACCAAACAACCGTGCGGC > NZ_CP025268/2233148‑2233424 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |