BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NZ_CP025268	1,293,179	A→G	noncoding (36/132 nt)	CXP41_RS06840 ←	RtT sRNA

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NZ_CP025268	1,293,179	0	A	G	98.1%	601.6 / ‑3.1	209	noncoding (36/132 nt)	CXP41_RS06840	RtT sRNA
Reads supporting (aligned to +/- strand): ref base A (0/0); major base G (137/68); minor base T (3/1); total (140/69)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 209 total aligned reads displayed.

AGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTCGAACCTTCGAAGTCGATGACGGCAGATTTAC  >  NZ_CP025268/1293060‑1293311

       ggACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGGGGCCAAGGGTTCTGGCTGGCGCGCGAGTCGTACCGGGGTCGCGGCGTCTCATCCTTACCCGCGTg                                                                                                            >  1:5439908/1‑140 (MQ=2)

             ctgcaaGTGATGGTGGTGGGGGACGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCTAACCTGGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGa                                                                                                      <  1:9029054/136‑1 (MQ=11)

              tGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAAAGCTCTCTCGCTTGCGCTAGAGTGGTACCTTGGTCGAAGCTTAGCAACCTTACCCCCATggggcgaa                                                                                                     >  1:284684/1‑135 (MQ=11)

                                           cTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGGGGCAACCCTCTCTCGGGGGCGCTCAAGTCGAACCGTGGTCGAAGCTTCTCATCCTTACCCGCGTGGGCAGTATATTTGATTGCGGTTTGGGTTggggattg                                                                        >  1:3807236/1‑133 (MQ=1)

                                           cTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTc                                                                       <  2:3368137/140‑1 (MQ=11)

                                              aGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGTCGCTCAAGTCGAACCTTTGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGATTGAGA‑GTTCAgg                                                                    <  1:959587/140‑1 (MQ=11)

                                              aGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCGCTCTCGCTGGCGCTCGAGTCGGACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTTATTGCGGATTCGTTTGGGA‑GTTCAgg                                                                    >  1:7742628/1‑140 (MQ=11)

                                               gcgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAggg                                                                   <  2:1457262/140‑1 (MQ=21)

                                               gcgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAggg                                                                   <  1:2066097/140‑1 (MQ=21)

                                                cgcgGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCGCTCTAGCTGACGCTCGAGCCGAACCGTAGTCGAAGCTTAGAAACCTTCCCCGCATGGGCAGAAGATTTGGTTGCGGATTAGCTTGAGA‑GTTAAGGGa                                                                  >  2:4547406/1‑140 (MQ=11)

                                                cgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGCATATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGa                                                                  >  2:7360994/1‑140 (MQ=255)

                                                cgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGATTGAGA‑GTTCAGGGa                                                                  >  2:5568785/1‑140 (MQ=255)

                                                cgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTACCCGCATGGGCAGAAAATTTGATTGCGGATTGGGTTGTGA‑GTTAAGGGa                                                                  >  1:11027605/1‑140 (MQ=11)

                                                cgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCATCTCATCCTTCCCCGCCTGGGCCGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGa                                                                  >  2:10712720/1‑140 (MQ=11)

                                                cgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCGGCGGCAACGCGCTCTCGCTGGCGCTCGAGTCGAACCATGGTCGAAGCTTCTCATCCATCCCCCCAAGGGCAGCATATTTAATTGGGGTTTAGGTTGGGA‑GTTCAgggc                                                                  >  1:7170623/1‑139 (MQ=11)

                                                 gcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTCGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGAc                                                                 <  1:5343788/140‑1 (MQ=255)

                                                 gcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGAc                                                                 <  1:10244385/140‑1 (MQ=255)

                                                     cgcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGTCGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCAGGGGCGGAATAGTTGATTGCGGATTCGCGTGAGA‑GTTCAGGGACtttt                                                             >  2:11478787/1‑140 (MQ=11)

                                                     cgcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTTGTCGAAGCTTCTCATCCTTCCCCGCCTGGGCAGAAGATTTTATTGCGGATTCGGTTGTGA‑GTTCAGGGACtgtt                                                             >  2:8898775/1‑140 (MQ=11)

                                                     cgcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGTATATTTGATTGCGGATTAGCTTGAGA‑GTTGAGGGACtttt                                                             >  2:2729125/1‑140 (MQ=11)

                                                     cgcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGACtttt                                                             <  1:5318008/140‑1 (MQ=255)

                                                     cgcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCGCTCTCGCGGTCGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCCGAATATTTGATTGCGGATTCGCGTGTGA‑GTTCAGGGAcggtt                                                             >  1:606261/1‑136 (MQ=11)

                                                      gcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGTCGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGACTTTTg                                                            <  1:10058836/140‑1 (MQ=255)

                                                      gcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCGTGGGCCGAATATTTGATTGCGGATTCGGTTGGGA‑GTTCAGGGACTTTTg                                                            >  2:864805/1‑140 (MQ=11)

                                                        gcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGACTTTTGaa                                                          <  2:5051563/140‑1 (MQ=255)

                                                        gcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGACTTTTGaa                                                          <  2:607927/140‑1 (MQ=255)

                                                        gcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGACTTTTGaa                                                          <  1:8488742/140‑1 (MQ=255)

                                                        gcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGACTTTTGaa                                                          <  1:9825569/140‑1 (MQ=255)

                                                        gcTCCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGACCATTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGAATTCGCTTGAGA‑GTTCAGGGACTTTTGaa                                                          <  1:9326337/140‑1 (MQ=11)

                                                         cTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGACTTTTGaaa                                                         <  1:10834998/140‑1 (MQ=255)

                                                         cTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGACTTTTGaaa                                                         <  1:7880098/140‑1 (MQ=255)

                                                          ttCGCCCTTCGGGTCGTTGCCTGCGGCCACGCTCTCTCGCGGACGCTCGAGCCGAACCATAGTCGAAGCTTCTCATACTTACCCGCATGGGCAGAATAATTGATTTCGGATTAGCTTGGGA‑GTTCAGGGTCTTTTTAAAg                                                        >  1:6360171/1‑140 (MQ=11)

                                                          ttCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGTCGCTCGAGCCGAACCTTTGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGGTTGGGA‑GTTCAGGGACTTTTGAAAg                                                        >  2:4911962/1‑140 (MQ=11)

                                                          ttCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGTCGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGACTTTTGAAAg                                                        <  1:10523151/140‑1 (MQ=255)

                                                             gCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTTGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGACTTTTGAAAGTga                                                     >  2:1942563‑M2/1‑138 (MQ=255)

                                                             gCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGACTTTTGAAAGTga                                                     >  1:5123317‑M2/1‑138 (MQ=255)

                                                             gCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGACTTTTGAAAGTga                                                     >  1:7517992‑M2/1‑138 (MQ=255)

                                                              cccTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGACTTTTGAAAGTgat                                                    >  1:11149885‑M2/1‑137 (MQ=255)

                                                              cccTTCGGGTCGTGGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGATTATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGACTTTTGAAAGTgat                                                    >  2:11011051‑M2/1‑137 (MQ=255)

                                                               ccTTCGGGTCGGTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGACTTTTGAAAGTgatg                                                   >  2:9470122‑M2/1‑136 (MQ=255)

                                                                 ttCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCGTAGTCGAAGCGTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCGTGAGA‑GTTCAGGGACTTTTGAAAGTgatggt                                                 <  2:9089445‑M2/140‑7 (MQ=255)

                                                                   cGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTATTCGATGATTCTCATACTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGACTTTTGAAAGTgatggtgg                                               >  1:3883045‑M2/1‑132 (MQ=255)

                                                                   cGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGACTTTTGAAAGTgatggtgg                                               <  2:5343580‑M2/140‑9 (MQ=255)

                                                                    gggTCGTTGCCTGCGGCAACGCTCTCTCGCTGTCGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGACTTTTGAAAGTgatggtggt                                              >  2:6623246‑M2/1‑131 (MQ=255)

                                                                    gggTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTGAGTCGCAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCGTGAGA‑GTTCAGGGACTATTGAAAGTgatggtggt                                              >  2:8330186‑M2/1‑131 (MQ=255)

                                                                       tCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGACTTTTGAAAGTgatggtggtggg                                           >  1:11446163‑M2/1‑128 (MQ=255)

                                                                       gcgTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTTGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGACTTTTGAAAGTgatggtggtggg                                           >  2:11330485‑M2/2‑128 (MQ=255)

                                                                         ggtgcCTGCGGCAACGCTCTCTCGCGGACGCTCGAGCCGAACCTTAGTCGACGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGACTTTTGAAAGTgatggtggtggggg                                         >  2:2130046‑M2/3‑126 (MQ=255)

                                                                         ggtgcCCGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCGTAGTCGAAGCTGCTCATCCTTCCCCGCTTTGGCAGAATATTTGCTTGCGGATACGCTTGAGA‑GTTCAGGGACTTTTGAAAGTgatggtggtggggg                                         >  2:7812235‑M2/3‑126 (MQ=255)

                                                                         gTTGCCTGCGGCAACGCTCTCTCGCTNACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGACTTTTGAAAGTgatggtggtggggg                                         >  1:7010683‑M2/1‑126 (MQ=255)

                                                                         gTTGCCTGCGGCAACGCTCTCTCGCTGTCGCTCTAGCCGAACCTTTGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGACTTTTGAAAGTgatggtggtggggg                                         >  1:1340413‑M2/1‑126 (MQ=255)

                                                                         gTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGACTTTTGAAAGTgatggtggtggggg                                         >  2:4481558‑M2/1‑126 (MQ=255)

                                                                         gTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGTATTCGCTTGAGA‑GTTCAGGGACTTTTGAAAGTgatggtggtggggg                                         >  2:7115205‑M2/1‑126 (MQ=255)

                                                                         gTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGACTTTTGAAAGTgatggtggtggggg                                         >  1:711929‑M2/1‑126 (MQ=255)

                                                                         gTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGACTTTTGAAAGTgatggtggtggggg                                         >  1:7724304‑M2/1‑126 (MQ=255)

                                                                         gTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGACTTTTGAAAGTgatggtggtggggg                                         >  2:7117382‑M2/1‑126 (MQ=255)

                                                                         gTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGACTTTTGAAAGTgatggtggtggggg                                         >  2:3807236‑M2/1‑126 (MQ=255)

                                                                         gTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGACTTTTGAAAGTgatggtggtggggg                                         >  1:4895165‑M2/1‑126 (MQ=255)

                                                                         gTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAAGATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGACTTTTGAAAGTgatggtggtggggg                                         >  2:9610059‑M2/1‑126 (MQ=255)

                                                                         gTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCGTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGACTTTTGAAAGTgatggtggtggggg                                         >  2:8470042‑M2/1‑126 (MQ=255)

                                                                           tGCCTGCGGCAACGCTCTCTCGCTGTCGCTCGAGCCGTACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAAGATTGGATTGCGGATTCGCGGGAGA‑GGTCAGGGACTGTTGGTAGTgatggtggtgggggac                                       <  2:7697097‑M2/140‑17 (MQ=255)

                                                                            gCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGACTTTTGAAAGTgatggtggtgggggaag                                      >  1:8114824‑M2/1‑123 (MQ=255)

                                                                              cTGCGTCAACGCTCTCTCGCTGACGCTCTTGCCGAACCTTTGTCGTAGCTTCTGATCCTTCCCCGATTGGGCAGATTATTTTATTTCGTATTAGCTTGAGT‑GTTCTGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGa                                    <  1:4320238/140‑1 (MQ=11)

                                                                              cTGCGGCACCGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGCTTGCGTATTCGCTTGAGA‑CTTCAGGGACTTTTGAAAGTgatggtggtgggggaagga                                    >  2:10228112‑M2/1‑121 (MQ=255)

                                                                              cTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGT‑GTTCAGGGACTTTTGAAAGTgatggtggtgggggaagga                                    >  1:1778465‑M2/1‑121 (MQ=255)

                                                                              cTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGACTTTTGAAAGTgatggtggtgggggaagga                                    >  1:7425999‑M2/1‑121 (MQ=255)

                                                                              cTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGACTTTTGAAAGTgatggtggtgggggaagga                                    >  1:5308061‑M2/1‑121 (MQ=255)

                                                                              cTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGACTTTTGAAAGTgatggtggtgggggaagga                                    >  2:3162780‑M2/1‑121 (MQ=255)

                                                                              cTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGACTTTTGAAAGTgatggtggtgggggaagga                                    >  1:8743460‑M2/1‑121 (MQ=255)

                                                                              cTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGACTTTTGAAAGTgatggtggtgggggaagga                                    >  1:4018277‑M2/1‑121 (MQ=255)

                                                                              cTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTACCCGCATGGGCAGAATATTTGATTGCTGATTCGCTTGTGA‑GTTCAGGGAATTTTGAAAGTGATGGTGGTGGGGGAAGGa                                    <  1:2578508/140‑1 (MQ=11)

                                                                              cTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACATTAGTAGATGATTCTCATCCTTCCCCGAATGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGACTTTTGAAAGTgatggtggtgggggaagga                                    >  2:8764892‑M2/1‑121 (MQ=255)

                                                                              cTGCGGCAACGCTCTCTCGCTGACGATCTAGCCTAACCTTTTTCGAATCTTATCATCCTTCCCCGCATGGGCAGATTATTTGATTGCGGATTCGCTTGAGT‑TTTCAGTGACTTTTGAAAGTgatggtggtgggggaagga                                    >  2:3999388‑M2/1‑121 (MQ=255)

                                                                              cTGCGGCAACGCACTCTCGCTGACGCTCGAGCCGCACCTGAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGACTATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGACTTTTGAACGTgatggtggtgggggaagga                                    >  2:5717363‑M2/1‑121 (MQ=255)

                                                                                     cacGCTCTCTCGCTGACGCTCGAGCCGAACCTGAGTCGACTCTTCTCATCCTTCCCCGCAAGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGACTTTTGAAAGTgatggtgctgggggaaggattactca                             >  2:1868225‑M2/2‑114 (MQ=255)

                                                                                     aaCGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGACTTTTGAAAGTgatggtggtgggggaaggattactca                             >  1:856725‑M2/1‑114 (MQ=255)

                                                                                           ctctcGCTGACGCTCGAGCCGACCCTTAGTCGAAGCTTCACCTCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGACTTTTGAAAGTgatggtggtgggggaaggattactcagcgctg                       >  1:8394095‑M2/1‑108 (MQ=255)

                                                                                           ctctcGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGAGTCGCTTGAGA‑GTTCAGGGACTTTTGAAAGTgatggtggtgggggaaggattactcagcgctg                       >  2:3277574‑M2/1‑108 (MQ=255)

                                                                                           ctctcGCTGACGCTCGAGCCGAACCTGAGTCGAAGCTTCTCCTCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGACTTTTGAAAGTgatggtggtgggggaaggattactcagcgctg                       >  2:1493334‑M2/1‑108 (MQ=255)

                                                                                             ctcGCTGTCGCTCTAGGCGAACCTTCGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCTGATTCGCTTGAGA‑TTTCAGGGACTTTTGAAAGTgatggtggtgggggaaggattactcagcgctgcg                     >  2:7793906‑M2/1‑106 (MQ=255)

                                                                                             ctcGCTGCCGCTCCAGGCGAACCTTCGTCGAAGCGTCTCCTCCTTCCCCGCTGGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGTCTTTTGAAAGTgatggtggggggggaaggattactcagcgctgcg                     >  1:318126‑M2/1‑106 (MQ=255)

                                                                                                  tGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGATTGAGA‑ATTCAGGGTCTTTTGAAAGTgatggtggtgggggaaggattactcagcgctgcgcgctt                >  2:11395724‑M2/1‑101 (MQ=255)

                                                                                                  tGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCGTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCATGGTCTTTTGAACCTgctggtggtgggggaaggattactcagcgctgcgcgctt                >  2:2870003‑M2/1‑101 (MQ=255)

                                                                                                   ggCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGTTTGAGA‑ATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTCGAACCTTCGAAGTCGATg               >  2:351646/1‑140 (MQ=11)

                                                                                                   gacgctcGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGACTTTTGAAAGTgatggtggtgggggaaggattactcagcgctgcgcgcttc               >  1:8034344‑M2/3‑100 (MQ=255)

                                                                                                    tcgctCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGACTTTTGAAAGTgatggtggtgggggaaggattactcagcgctgcgcgcttcg              >  1:9948198‑M2/2‑99 (MQ=255)

                                                                                                    gcgcTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGTTTGTGA‑GTTCAGGGGCTTTGGAAAGTGATGGTGGTGGGGGACGGATTAGAAACATCGTAgaccttga              >  1:10132479/1‑133 (MQ=11)

                                                                                                    acgctCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGACTTTTGAAAGTgatggtggtgggggaaggattactcagcgctgcgcgcttcg              <  1:5751442‑M2/139‑42 (MQ=255)

                                                                                                        tCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCAGGGGCAGAATATTTACTAGCGGATGCG‑TTGGGACGTTCAGGGACGTTGGAATGTGATGGTGGTGGGGGGAGGATTAGAACCTTCGAAGTAGATGACGGc          >  1:3051480/1‑140 (MQ=2)

                                                                                                        tCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCCGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGACTTTTGAAAGTgatggtggtgggggaaggattactcagcgcttcgcgcttcgcccg          <  2:436549‑M2/140‑46 (MQ=255)

                                                                                                        tCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGTGA‑GTTCAGGGACTTTTGAAAGTgatggtggtgggggaaggattactaagagcggcgaggttcgcccg          <  1:6960501‑M2/140‑46 (MQ=255)

                                                                                                        tCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGACTTTTGAAAGTgatggtggtgggggaaggattactcagcgctgcgcgcttcgccct          <  1:4588186‑M2/140‑46 (MQ=255)

                                                                                                        tCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGACTTTTGAAAGTgatggtggtgggggaaggattactcagcgctgcgcgcttcgccct          <  1:2183076‑M2/140‑46 (MQ=255)

                                                                                                        tCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGACTTTTGAAAGTgatggtggtgggggaaggattactcagcgctgcgcgcttcgccct          <  1:119178‑M2/140‑46 (MQ=255)

                                                                                                        tCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGACTTTTGAAAGTgatggtggtgggggaaggattactcagcgctgagagcttcgccca          <  2:10572070‑M2/140‑46 (MQ=255)

                                                                                                        tCGAGACGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGATTGAGA‑GTTCAGGGACTTTTGAAAGTgatggtggtgggggaaggattactcagcgctgcgaccttcgccca          <  2:7539706‑M2/140‑46 (MQ=255)

                                                                                                           aGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGACTTTTGAAAGTgatggtggtgggggaaggattactcagcgctgcgcgcttcgcccttcg       <  1:1610193‑M2/140‑49 (MQ=255)

                                                                                                              cGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGACTTTTGAAAGTgatggtggtgggggaaggattactcagctctgcgaccttcgcccgtctggt    <  1:6279686‑M2/140‑52 (MQ=255)

                                                                                                                aaCCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGACTTTTGAAAGTgatggtggtgggggaaggattactcagcgctgcgcgcttcgcccttcgggtcg  <  1:3334944‑M2/140‑54 (MQ=255)

                                                                                                                aaCCTGAGTCGAAGCTTCCCATCCTGCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGACTTTTGAAAGTgatggtggtgggggaaggattactcagcgctgcgcgcttcgcccttcgggtcg  >  1:8353253‑M2/1‑87 (MQ=255)

AGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGA‑GTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTCGAACCTTCGAAGTCGATGACGGCAGATTTAC  >  NZ_CP025268/1293060‑1293311

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`