Predicted mutation
evidence seq id position mutation annotation gene description
RA NZ_CP025268 183,450 A→G K386R (AAG→AGG)  cdaR → DNA‑binding transcriptional regulator CdaR

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NZ_CP025268183,4500AG99.5% 2150.5 / NA 620K386R (AAG→AGG) cdaRDNA‑binding transcriptional regulator CdaR
Reads supporting (aligned to +/- strand):  ref base A (0/0);  major base G (353/264);  minor base T (1/2);  total (354/266)
Fisher's exact test for biased strand distribution p-value = 5.80e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 620 total aligned reads displayed.

TCAAAGGCGTTGTTTATTCATCGTAATACCCTGGAGTATCGGCTTAATCGTATATCGGAACTGACCGGGCTTGATTTGGGCAATTTTGATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGGTGAAGAGCGGTAAGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGAAGGGTAGAGGGGAATGCCCGAATTAACCGTCAGTTCGGGATTATTTACGCGTTAGTTTTTCCAGATCGGCTTCAATCTCGCTGATCTT  >  NZ_CP025268/183314‑183586
                                                                                                                                          |                                                                                                                                        
 cAAAGGCGTTGTTTATTCCTCGTAATACCCTGGAGTATCGGCTTAATCGTATATCGGAACTGACCGGGCTTGATTTGGGCAATTTTGATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGGATGAAGAGCGGTAGGtt                                                                                                                                       <  1:4133903/140‑1 (MQ=255)
  aaaGGCGTTGTTTATTCATCGTAATACCCTGGAGTATCGGCTTAATCGTATATCGGAACTGACCGGGCTTGATTTGGGCAATTTTGATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGGATGAAGAGCGGTAGGTTa                                                                                                                                      <  1:3262126/140‑1 (MQ=255)
  aaaGGCGTTGTTTATTCATCGTAATACCCTGGAGTATCGGCTTAATCGTATATCGGAACTGACCGGGCTTGATTTGGGCAATTTTGATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGGATGAAGAGCGGTAGGTTa                                                                                                                                      <  1:10887188/140‑1 (MQ=255)
        gttgttTATTCATCGTAATACCCTGGAGTATCGGCTTAATCGTATATCGGAACTGACCGGGCTTGATTTGGGCAATTTTGATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGGATGAAGAGCGGTAGGTTATGCGtt                                                                                                                                <  1:823861/140‑1 (MQ=255)
        gttgttTATTCATCGTAATACCCTGGAGTATCGGCTTAATCGTATATCGGAACTGACCGGGCTTGATTTGGGCAATTTTGATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGGATGAAGAGCGGTAGGTTATGCGtt                                                                                                                                <  2:5878898/140‑1 (MQ=255)
         ttgttTATTCATCGTAATACCCTGGAGTATCGGCTTAATCGTATATCGGAACTGACCGGGCTTGATTTGGGCAATTTTGATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGGATGAAGAGCGGTAGGTTATGCGTTa                                                                                                                               >  1:8488118/1‑140 (MQ=255)
          tgttTATTCATCGTAATACCCTGGAGTATCGGCTTAATCGTATATCGGAACTGACCGGGCTTGATTTGGGCAATTTTGATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGGATGAAGAGCGGTAGGTTATGCGTTaa                                                                                                                              <  2:1006015/140‑1 (MQ=255)
             ttATTCATCGTAATACCCTGGAGTATCGGCTTAATCGTATATCGGAACTGACCGGGCTTGATTTGGGCAATTTTGATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGGATGAAGAGCGGTAGGTTATGCGTTAAGGt                                                                                                                           <  2:2505531/140‑1 (MQ=255)
                   aTCGTAATACCCTGGAGTATCGGCTTAATCGTATATCGGAACTGACCGGGCTTGATTTGGGCAATTTTGATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGGATGAAGAGCGGTAGGTTATGCGTTAAGGTTGAggc                                                                                                                     <  2:11350318/140‑1 (MQ=255)
                   aTCGTAAGACCCTGGAGTATCGGCTTAATCGTATATCGGAACTGACCGGGCTTGATTTGGGCAATTTTGATGACAGGTTGCNGCTGTATGTGGCGCTACAACTGGATGAAGAGCGGTAGGTTATGCGTTAANGTTGAggc                                                                                                                     <  1:6194132/140‑1 (MQ=255)
                    tCGTAATACCCTGGAGTATCGGCTTAATCGTATATCGGAACTGACCGGGCTTGATTTGGGCAATTTTGATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGGATGAAGAGCGGTAGGTTATGCGTTAAGGTTGAggcg                                                                                                                    >  1:6894281/1‑140 (MQ=255)
                      gTAATACCCTGGAGTATCGGCTTAATCGTATATCGGAACTGACCGGGCTTGATTTGGGCAATTTTGATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGGATGAAGAGCGGTAGGTTATGCGTTAAGGTTGAggcggc                                                                                                                  >  1:6322282/1‑140 (MQ=255)
                      gTAATACCCTGGAGTATCGGCTTAATCGTATATCGGAACTGACCGGGCTTGATTTGGGCAATTTTGATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGGATGAAGAGCGGTAGGTTATGCGTTAAGGTTGAggcggc                                                                                                                  >  2:6215305/1‑140 (MQ=255)
                      gTAATACCCTGGAGTATCGGCTGAAGGGTATCTCGGAACTGCGCGGGCGTGCTGGGGGCAATGTTGATGACAGGTTGCTGCTGGATGTGGCGTTACTACGGGATGACGAGCGGGAGGTTATGCGTTAAGGTTGAggcggc                                                                                                                  >  2:2784470/1‑140 (MQ=255)
                       tAATACCCTGGAGTATCGGCTTAATCGTATATCGGAACTGACCGGGCTTGATTTGGGCAATTTTGATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGGATGAAGAGCGGTAGGTTATGCGTTAAGGTTGAGgcggcg                                                                                                                 <  1:10449279/140‑1 (MQ=255)
                            cccTGGAGTATCGGCTTAATCGTATATCGGAACTGACCGGGCTTGATTTGGGCAATTTTGATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGGATGAAGAGCGGTAGGTTATGCGTTAAGGTTGAGGCGGCGCTGGc                                                                                                            <  1:10656390/140‑1 (MQ=255)
                             ccTGGAGTATCGGCTTAATCGTATATCGGAACTGACCGGGCTTGATTTGGGCAATTTTGATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGGATGAAGAGCGGTAGGGTATGCGTTAAGGTTGAGGCGGCGCTGGCt                                                                                                           >  2:1321112/1‑140 (MQ=255)
                              cTGGAGTATCGGCTTAATCGTATATCGGAACTGACCGGGCTTGATTTGGGCAAGTTTGATGACAGGTTGCTGCTGTAGGTGGCGTTACAACTGGATGAAGAGCGGTCGGTTATGCGGTAAGGTTGAGGCGGCGCTGGCTc                                                                                                          >  2:6953430/1‑140 (MQ=255)
                               tGGAGTATCGGCTTAATCGTATATCGGAACTGACCGGGCTTGATTTGGGCAATTTTGATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGGATGAAGAGCGGTAGGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCa                                                                                                         >  1:4485360/1‑140 (MQ=255)
                               tGGAGTATCGGCTTAATCGTATATCGGAACTGACCGGGCTTGATTTGGGCAATTTTGATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGGATGAAGAGCGGTAGGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCa                                                                                                         >  2:8636210/1‑140 (MQ=255)
                               tGGAGTATCGGCTTAATCGTATATCGGAACTGACCGGGCTTGATTTGGGCAATTTTGATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGGATGAAGAGCGGTAGGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCa                                                                                                         >  2:7750765/1‑140 (MQ=255)
                               tGGAGTATCGGCTTAATCGTATATCGGAACTGACCGGGCTTGATTTGGGCAATTTTGATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGGATGAAGAGCGGTAGGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCa                                                                                                         >  2:51705/1‑140 (MQ=255)
                               tGGAGTATCGGCTTAATCGTATATCGGAACTGACCGGGCTTGAGTTGGGCAATTTTGATGACAGGTTGCTGCTGTTGGTGGCGTTACAACTGGATGAAGAGCGGTAGGTGATGCGTTAAGGTTGAGGCGGCGCTGGCTCa                                                                                                         >  2:2715025/1‑140 (MQ=255)
                                 gAGTATCGGCTTAATCGTATATCGGAACTGACCGGGCTTGATTTGGGCAATTTTGATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGGATGAAGAGCGGTAGGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCAtt                                                                                                       >  1:3782500/1‑140 (MQ=255)
                                 gAGTATCGGCTTAATCGTATATCGGAACTGACCGGGCTTGATTTGGGCAATTTTGATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGGATGAAGAGCGGTAGGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCAtt                                                                                                       >  1:5999182/1‑140 (MQ=255)
                                 gAGTATCGGCTTAATCGTATATCGGAACTGACCGGGCTTGATTTGGGCAATTTTGATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGGATGAAGAGCGGTAGGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCAtt                                                                                                       >  1:2088386/1‑140 (MQ=255)
                                 gAGTATCGGCTTAATCGTATATCGGAACTGACCGGGCTTGATTTGGGCAATTTTGATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGGATGAAGAGCGGTAGGTTATGCGGTAAGGTTGAGGCGGCGCTGGCTCAtt                                                                                                       >  1:3856683/1‑140 (MQ=255)
                                  aGTATCGGCTTAATCGTATATCGGAACTGACCGGGCTTGATTTGGGCAATTTTGATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGGATGTAGAGCGGTAGGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTc                                                                                                      <  1:9811132/140‑1 (MQ=255)
                                      tCGGCTTAATCGTATATCGGAACTGACCGGGCTTGATTTGGGCAATTTTGATGACAGGTTGCTGCTGTATGTGGCGTTCCAACTGGATGAAGAGCGGTAGGTTATGCGTTAAGGTTGTGGCGGCGCTGGCTCATTCCCCt                                                                                                  >  2:8304843/1‑140 (MQ=255)
                                      tCGGCTTAATCGTATATCGGAACTGACCGGGCTTGATTTGGGCAATTTTGATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGGATGAAGAGCGGTAGGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCt                                                                                                  >  2:7572496/1‑140 (MQ=255)
                                      gcGGCTTAATCGTATATCGGAACTGACCGGGCTTGATTTGGGCAAGTTTGATGACAGGTTGCTGCTGTAGGTGGCTTTACAACTGGATGACGAGCTGTAGGTTATTCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCt                                                                                                  <  2:8105766/139‑1 (MQ=255)
                                          cTTAATCGTAATTCGGAACTGACCGTGCTTGATTTGGGCAATTTTGATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGGATGAAGAGCGGTAGGTTATGCTTTAAGGTTGAGGCGGCGCTGTCTCATTCCCCTCAGc                                                                                              <  2:3856990/140‑1 (MQ=255)
                                            tAATCGTATATCGGAACTGACCGGGCTTGATTTGGGCAATTTTGATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGGATGAAGAGCGGTAGGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGccc                                                                                            <  1:217935/140‑1 (MQ=255)
                                             aaTCGTATATCGGAACTGACCGGGCTTGATTTGGGCAATTTTGATGACAGGTTGCTGCTGTCTGTGGCGTTAAAAATGGATGAAGAGCGGTAGGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCg                                                                                           >  2:1118880/1‑140 (MQ=255)
                                             aaTCGTATATCGGAACTGACCGGGCTTGATTTGGGCAATTTTGATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGGATGAAGAGCGGTAGGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCg                                                                                           <  1:4021495/140‑1 (MQ=255)
                                              aTCGTATATCGGAACTGACCGGGCTTGATTTGGGCAATTTTGATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGGATGAAGAGCGGTAGGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGa                                                                                          >  1:765285/1‑140 (MQ=255)
                                              aTCGTATATCGGAACTGACCGGGCTTGATTTGGGCAATTTTGATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGGATGAAGAGCGGTAGGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGa                                                                                          >  1:3382933/1‑140 (MQ=255)
                                               tCGTATATCGGAACTGACCGGGCTTGATTTGGGCAATTTTGATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGGATGAAGAGCGGTAGGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGaa                                                                                         <  1:7389284/140‑1 (MQ=255)
                                               tCGTATATCGGAACTGACCGGGCTTGATTTGGGCAATTTTGATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGGATGAAGAGCGGTAGGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGaa                                                                                         <  1:4897320/140‑1 (MQ=255)
                                               tCGTATATCGGAACTGACCGGGCTTGATTTGGGCAATTTTGATGACAGGTTGCTGCTGTATGTGGCGGTACAACTGGATGAAGAGCGGTAGGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGaa                                                                                         <  2:10805465/140‑1 (MQ=255)
                                               tCGTATAACGCAACTGACCGGGCTTCATTTGGGCAAATTTGATGACATGTTGCTGCTGTATGTGGCGTTACAACTGGATGAAGAGCGGTAGGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGaa                                                                                         <  2:1416293/140‑1 (MQ=255)
                                                 gTATATCGGAACTGACCGGGCTTGATTTGGGCAATTTTGATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGGATGAAGAGCGGTAGGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGAAgg                                                                                       <  2:2846223/140‑1 (MQ=255)
                                                    tatCGGAACTGACCGGGCTTGATTTGGGCAATTTTGATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGGATGACGAGCGGTAGGTTATGCGGTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGAAGGGTa                                                                                    >  2:5000928/1‑140 (MQ=255)
                                                    tatCGGAACTGACCGGGCTTGATTTGGGCAATTTTGATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGGATGAAGAGCGGTAGGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGAAGGGTa                                                                                    >  2:9608841/1‑140 (MQ=255)
                                                    tatCGGAACTGACCGGGCTTGATTTGGGCAATTTTGATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGGATGAAGAGCGGTAGGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGAAGGGTa                                                                                    >  1:9512191/1‑140 (MQ=255)
                                                    tatCGGAACTGACCGGGCTTGATTTGGGCAATTTTGATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGGATGAAGAGCGGTAGGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGAAGGGTa                                                                                    >  1:8908505/1‑140 (MQ=255)
                                                    tatCGGAACTGACCGGGCTTGATTTGGGCAATTTTGATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGGATGAAGAGCGGTAGGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGAAGGGTa                                                                                    >  1:11174190/1‑140 (MQ=255)
                                                    tatCGGAACTGACCGGGCTTGATTTGGGCAATTTTGATGACAGGTTGCTGCTGTATGTGGCGATACAACTGGATGAAGAGCTGTAGGTTATGCGTTATGGTTGAGGCGGCGCTGGCGCATTCCCCTCAGCCCGAAGGGtc                                                                                    >  2:2271880/1‑139 (MQ=255)
                                                     atCGGAACTGACCGGGCGTGCTTTGGGCAATTTGGATGACAGGTTGCTGCTGTATGTGGCGTGACAACTGTATGAAGAGCGGTAGGTTATGCGTTAAGGTTGAGGCGGCGCTGGCACATGCCCCTCAGCCCGAAGGGTag                                                                                   <  2:8420747/140‑1 (MQ=255)
                                                       cGGAACTGACCGGGCTTGATTTGGGCAATTTTGATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGGATGAAGAGCGGTAGGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGAAGGGTagag                                                                                 >  2:1966595/1‑140 (MQ=255)
                                                        ggAACTGACCGGGCTTGATTTGGGCAATTTTGATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGGATGAAGAGCGGTAGGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGAAGGGTAGAgg                                                                                >  2:7096077/1‑140 (MQ=255)
                                                         gAACTGACCGGGCTTGATTTGGGCAATTTTGATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGGATGAAGAGCGGTAGGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCt                                                                                                  >  2:9310670/1‑121 (MQ=255)
                                                         gAACTGACCGGGCTTGATTTGGGCAATTTTGATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGGATGAAGAGCGGTAGGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGAAGGGTAGAggg                                                                               >  2:5608244/1‑140 (MQ=255)
                                                         gAACTGACCGGGCTTGATTTGGGCAATTTTGATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGGATGAAGAGCGGTAGGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGAAGGGTAGAggg                                                                               <  1:2745246/140‑1 (MQ=255)
                                                           aCTGACCGGGCTTGATTTGGGCAATTTTGATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGGATGAAGAGCGGTAGGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGAAGGGTAGAGGGGa                                                                             <  1:5818963/140‑1 (MQ=255)
                                                               aCCGGGCTTGATTTGGGCAATTTTGATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGGATGAAGAGCGGTAGGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGAAGGGTAGAGGGGAATGc                                                                         >  1:5755789/1‑140 (MQ=255)
                                                               aCCGGGCTGGAGGTGGGCAATTTTGATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGGATGACGAGCGGTCGGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCGCTGCCCGAAGGGGAGCGGGGAATGc                                                                         >  2:5338725/1‑140 (MQ=255)
                                                                cccggCTTGATTTCGGCAATTTTGATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGTATGAAGAGCGGAAGGTTATGCGTTAAGGTAGAGGAGGCGCTGGCTCATTCCCCTCAGCCCGAAGGGTAGAGGGGAATGcc                                                                        >  2:4855795/4‑140 (MQ=255)
                                                                    gCTTGATTTGGGCAATTTTGATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGGATGAAGAGCGGTAGGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGAAGGGTAGAGGGGAATGCCCGaa                                                                    <  1:10150943/140‑1 (MQ=255)
                                                                            tGGGCAATTTTGATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGGATGAAGAGCGGTAGGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGAAGGGTAGAGGGGAATGCCCGAATTAACCGt                                                            <  2:3103894/140‑1 (MQ=255)
                                                                               gCAATTTTGATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGGATGAAGAGCGGTAGGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGAAGGGTAGAGGGGAATGCCCGAATTAACCGTCAg                                                         >  1:3644104/1‑140 (MQ=255)
                                                                                 aaTTTTGATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGGATGAAGAGCGGTAGGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGAAGGGTAGAGGGGAATGCCCGAATTAACCGTCAGtt                                                       <  1:1347688/140‑1 (MQ=255)
                                                                                   ttttGATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGGATGAAGAGCGGTAGGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGAAGGGTAGAGGGGAATGCCCGAATTAACCGTCAGTTCg                                                     >  2:1100897/1‑140 (MQ=255)
                                                                                   ttttGATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGGATGAAGAGCGGTAGGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGAAGGGTAGAGGGGAATGCCCGAATTAACCGACAGTACg                                                     >  2:10391451/1‑140 (MQ=255)
                                                                                                 tgctgcTGTATGTGGCGTTACAACTGGATGAAGAGCGGTAGGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGAAGGGTAGAGGGGAATGCCCGAATTAACCGTCAGTTCGGGATTATTTAcgcg                                       <  1:17168/140‑1 (MQ=255)
                                                                                                   ctgctgTATGTGGCGTTACAACTGGATGAAGAGCGGTAGGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGAAGGGTAGAGGGGAATGCCCGAATTAACCGTCAGTTCGGGATTATTTACGCGtt                                     >  1:1063913/1‑140 (MQ=255)
                                                                                                         tATGTGGCGTTACAACTGGATGAAGAGCGGTAGGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGAAGGGTAGAGGGGAATGCCCGAATTAACCGTCAGTTCGGGATTATTTACGCGTTAGtttt                               >  1:11458653/1‑140 (MQ=255)
                                                                                                         tATGTGGCGTTACAACTGGATGAAGAGCGGTAGGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGAAGGGTAGAGGGGAATGCCCGAATTAACCGTCAGTTCGGGATTATTTACGCGTTAGtttt                               >  1:8028649/1‑140 (MQ=255)
                                                                                                           tgtgGCGTTACAACTGGATGAAGAGCGGTAGGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGAAGGGTAGAGGGGAATGCCCGAATTAACCGTCAGTTCGGGATTATTTACGCGTTAGTTTTTc                             >  1:2293795/1‑140 (MQ=255)
                                                                                                           tgtgGCGTTACAACTGGATGAAGAGCGGTAGGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGAAGGGTAGAGGGGAATGCCCGAATTAACCGTCAGTTCGGGATTATTTACGCGTTAGTTTTTc                             >  2:10231902/1‑140 (MQ=255)
                                                                                                              ggCGTTACAACTGGATGAAGAGCGGTAGGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGAAGGGTAGAGGGGAATGCCCGAATTAACCGTCAGTTCGGGATTATTTACGCGTTAGTTTTTCCAg                          >  1:9362599/1‑140 (MQ=255)
                                                                                                              ggCGTTACAACTGGATGAAGAGCGGTAGGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGAAGGGTAGAGGGGAATGCCCGAATTAACCGTCAGTTCGGGATTATTTACGCGTTAGTTTTTCCAg                          >  1:7107089/1‑140 (MQ=255)
                                                                                                                cGTTACAACTGGATGAAGAGCGGTAGGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGAAGGGTAGAGGGGAATGCCCGAATTAACCGTCAGTTCGGGATTATTTACGCGTTAGTTTTTCCAGAt                        >  1:4766649/1‑140 (MQ=255)
                                                                                                                cGTTACAACTGGATGAAGAGCGGTAGGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGAAGGGTAGAGGGGAATGCCCGAATTAACCGTCAGTTCGGGATTATTTACGCGTTAGTTTTTCCAGAt                        >  1:8654034/1‑140 (MQ=255)
                                                                                                                cGTTACAACTGGATGAAGAGCGGTAGGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGAAGGGTAGAGGGGAATGCCCGAATTAACCGTCAGTTCGGGATTATTTACGCGTTAGTTTTTCCAGAt                        >  1:256212/1‑140 (MQ=255)
                                                                                                                cGTTACAACTGGATGAAGAGCGGTAGGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGAAGGGTAGAGGGGAATGCCCGAATTAACCGTCAGTTCGGGATTATTTACGCGTTAGTTTTTCCAGAt                        >  1:5064524/1‑140 (MQ=255)
                                                                                                                cGTTACAACTGGATGAAGAGCGGTAGGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGAAGGGTAGAGGGGAATGCCCGAATTAACCGTCAGTTCGGGATTATTTACGCGTGAGTTTTTCCAGAt                        <  2:3594712/140‑1 (MQ=255)
                                                                                                                   tACAACTGGATGAAGAGCGGTAGGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGAAGGGTAGAGGGGAATGCCCGAATTAACCGTCAGTTCGGGATTATTTACGCGTTAGTTTTTCCAGATCgg                     >  2:11498219/1‑140 (MQ=255)
                                                                                                                   tACAACTGGATGAAGAGCGGTAGGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGAAGGGTAGAGGGGAATGCCCGAATTAACCGTCAGTTCGGGATTATTTACGCGTTAGTTTTTCCAGATCgg                     >  2:4498905/1‑140 (MQ=255)
                                                                                                                   tACAACTGGATGAAGAGCGGTAGGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGAAGGGTAGAGGGGAATGCCCGAATTAACCGGCAGTTCGGGATTATTTACGCGTTAGTTTTTCCAGATCgg                     >  2:1704818/1‑140 (MQ=255)
                                                                                                                   tACAACTGGATGAAGAGCGGTAGGTTAGGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGAGGGGGAGAGGGGAATGCCCGCATTAACCGTCAGTTCGGGATTATTTAGGCGTTAGTTTTTCCAGATCgg                     >  2:1794841/1‑140 (MQ=255)
                                                                                                                     cAACTGGATGAAGAGCGGTAGGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGAAGGGTAGAGGGGAATGCCCGAATTAACCGTCAGTTCGGGATTATTTACGCGTTAGTTTTTCCAGATCGGCt                   >  1:7884881/1‑140 (MQ=255)
                                                                                                                     cAACTGGATGAAGAGCGGTAGGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGAAGGGTAGAGGGGAATGCCCGAATTAACCGTCAGTTCGGGATTATTTACGCGTTAGTTTTTCCAGATCGGCt                   >  2:6681251/1‑140 (MQ=255)
                                                                                                                     cAACTGGATGAAGAGCGGTAGGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGAAGGGTAGAGGGGAATGCCCGAATTAACCGTCAGTTCGGGATTATTTAAGAGTTAGTTTTTCCAGATCGGCt                   >  2:5509601/1‑140 (MQ=255)
                                                                                                                          tggctGAAGAGCGGTAGGTTATGCGTGAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGAAGGGTAGAGGGGAATGCCCGAATTAACCGTCAGTTCGGGATTATTTACGCGTTAGTTTGTCCAGATCGGCTACaa               <  2:4933702/136‑1 (MQ=255)
                                                                                                                          tggatGAAGAGCGGTAGGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGAAGGGTAGAGGGGAATGCCCGAATTAACCGTCAGTTCGGGATTATTTACGCGTTAGTTTTTCCAGATCGGCTTCaa               <  2:3344998/136‑1 (MQ=255)
                                                                                                                            gatGAAGAGCGGTAGGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGAAGGGTAGAGGGGAATGCCCGAATTAACCGTCAGTTCGGGATTATTTACGCGTTAGTTTTTCCAGATCGGCTTCAAtc             >  2:9033388/3‑140 (MQ=255)
                                                                                                                            gatGAAGAGCGGTAGGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGAAGGGTAGAGGGGAATGCCCGAATTAACCGTCAGTTCGGGAGTATTTACGCGTTAGTTTTTCCAGATCGGCTTCAAtc             >  1:6647118/3‑140 (MQ=255)
                                                                                                                                 agagCGGTTGGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGAAGGGTAGAGGGGAATGCCCGAATTAACCGTCAGTTCGGGATTATTTACGCGTTAGTTTTTCCAGATCGGCTTCAATCTCGCt        >  2:7233567/1‑140 (MQ=255)
                                                                                                                                 agagCGGTAGGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGAAGGGTAGAGGGGAATGCCCGAATTAACCGTCAGTTCGGGATTATTTACGCGTTAGTTTTTCCAGATCGGCTTCAATCTCGCt        <  2:4196152/140‑1 (MQ=255)
                                                                                                                                 agagCGGTAGGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGAAGGGTAGAGGGGAATGCCCGAATTAACCGTCAGTTCGGGATTATTTACGCGTTAGTTTTTCCAGATCGGCTTCAATCTCGCt        <  1:10018275/140‑1 (MQ=255)
                                                                                                                                 agagCGGTAGGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGAAGGGTAGAGGGGAATGCCCGAATTAACCGTCAGTTCGGGATTATTTACGCGTTAGTTTTTCCAGATCGGCTTCAATCTCGCt        <  2:9238901/140‑1 (MQ=255)
                                                                                                                                 agagCGGTAGGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGAAGGGTAGAGGGGAATGCCCGAATTAACCGTCAGTTCGGGATTATTTACGCGTTAGTTTTTCCAGATCGGCTTCAATCTCGCt        <  2:4711849/140‑1 (MQ=255)
                                                                                                                                 agagCGGTAGGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGAAGGGTAGAGGGGAATGCCCGAATTAACCGTCAGTTCGGGATTATTTACGCGTTAGTTTTTCCAGATCGGCTTCAATCTCGCt        <  1:4276345/140‑1 (MQ=255)
                                                                                                                                 agagCGGTAGGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGAAGGGTAGAGGGGAATGCCCGAATTAACCGTCAGTTCGGGATTAGTTACGCGTTAGTTTTTCCAGATCGGCTTCAATCTCGCt        >  2:6368854/1‑140 (MQ=255)
                                                                                                                                    gCGGTAGGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGAAGGGTAGAGGGGAATGCCCGAATTAACCGTCAGTTCGGGATTATTTACGCGTTAGTTTTTCCAGATCGGCTTCAATCTCGCTGAt     <  1:2925222/140‑1 (MQ=255)
                                                                                                                                    gCGGTAGGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGAAGGGTAGAGGGGAATGCCCGAATTAACCGTCAGTTCGGGATTATTTACGCGTTAGTTTTTCCAGATCGGCTTCAATCTCGCTGAt     <  1:5278949/140‑1 (MQ=255)
                                                                                                                                      ggTAGGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGAAGGGTAGAGGGGAATGCCCGAATTAACCGTCAGTTCGGGCTTATTTACGCGTTAGTTTTTCCAGATCGGCTTCAATCTCGCTGATCt   >  1:5477953/1‑140 (MQ=255)
                                                                                                                                      ggTAGGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGAAGGGTAGAGGGGAATGCCCGAATTAACCGTCAGTTCGGGATTATTTACGCGTTAGTTTTTCCAGATCGGCTTCAATCTCGCTGATCt   >  2:5686825/1‑140 (MQ=255)
                                                                                                                                       gTAGGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGAAGGGTAGAGGGGAATGCCCGAATTAACCGTCAGTTCGGGATTATTTACGCGTTAGTTTTTCCAGATCGGCTTCAATCTCGCTGATCtt  >  1:9262616/1‑140 (MQ=255)
                                                                                                                                          |                                                                                                                                        
TCAAAGGCGTTGTTTATTCATCGTAATACCCTGGAGTATCGGCTTAATCGTATATCGGAACTGACCGGGCTTGATTTGGGCAATTTTGATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGGTGAAGAGCGGTAAGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGAAGGGTAGAGGGGAATGCCCGAATTAACCGTCAGTTCGGGATTATTTACGCGTTAGTTTTTCCAGATCGGCTTCAATCTCGCTGATCTT  >  NZ_CP025268/183314‑183586

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: