| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP025268 | 3,392,785 | C→T | intergenic (‑72/+358) | tldD ← / ← yhdP | metalloprotease TldD/AsmA2 domain‑containing protein YhdP |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP025268 | 3,392,785 | 0 | C | T | 98.0% | 2780.8 / NA | 817 | intergenic (‑72/+358) | tldD/yhdP | metalloprotease TldD/AsmA2 domain‑containing protein YhdP |
| Reads supporting (aligned to +/- strand): ref base C (0/2); major base T (285/500); minor base A (1/15); total (287/530) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.48e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 819 total aligned reads displayed.
AACAAGTCCTGATGTTTCAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTACCCAGCCT‑ACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCAC > NZ_CP025268/3392649‑3392921 | aCAAGTCCTGATGTTTCAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAg < 2:693854/140‑1 (MQ=255) cacctCCTGATGTTTCAGGCCGTTCGCCGCTAGCAATTGGACACTTACCAGGTTAAGACTCATCGTTATTGCTACTCCTTAGTTCCTGCAGAAGAGGATTTTTTACGGCAGCCGGATGCGGCGTGAACGCCCTATCCAGc < 2:7329526/136‑1 (MQ=255) cAAGTCCTGATGTTTCAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGc < 2:7691698/140‑1 (MQ=255) aaGTCCTGATGTTTCAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGcc < 1:3469328/140‑1 (MQ=255) aGTCCTGATGTTTCAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCTGCCt > 2:542622/1‑140 (MQ=255) gTCCTGATGTTTCAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCT‑a < 2:389950/140‑1 (MQ=255) gTCCTGATGTTTCAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCT‑a < 1:6899224/140‑1 (MQ=255) gATGTTTCAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCT‑ACGGtt < 2:3673910/140‑1 (MQ=255) gATGTTTCAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCT‑ACGGtt < 2:667265/140‑1 (MQ=255) gATGTTTCAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCT‑ACGGtt < 1:2860630/140‑1 (MQ=255) aTGTTTCAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTCCTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCT‑CCGGTTa > 2:1386360/1‑140 (MQ=255) aTGTTTCAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCT‑ACGGtga > 2:11043750/1‑138 (MQ=255) aTGTTTCAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCT‑ACGGTTa > 2:4358552/1‑140 (MQ=255) tGTTTCAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCT‑ACGGTTAt < 2:274379/140‑1 (MQ=255) tCAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCT‑ACGGTTATGTTc > 1:4833156/1‑140 (MQ=255) tCAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCT‑ACGGTTATGTTc > 1:7841397/1‑140 (MQ=255) tCAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAACACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACTCCCTATCCAGCCT‑ACGGTTATGtta > 2:8098186/1‑139 (MQ=255) cggCCGTGCGCCGCTAGCAATGGTTCACGTCCCATGTGATGACTCAGCGTTTTTGCGACTCGTTAGTGACTGCAGGAGGGGAGTTGTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCATCCT‑ACGGTTATGTTctg < 2:11245418/139‑3 (MQ=21) aGGCCGTTCGCCGCTAGCAATTGTTCACTTCCCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCT‑ACGGTTATGTTCCg < 2:5705952/140‑1 (MQ=255) aGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCT‑ACGGTTATGTTCCg < 2:2327966/140‑1 (MQ=255) ccGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCT‑ACGGTTATGTTCCGGtt < 1:625285/140‑1 (MQ=255) gTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCT‑ACGGTTATGTTCCGGTTTg < 1:1916296/140‑1 (MQ=255) ttCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCT‑ACGGTTATGTTCCGGTTTGt > 1:6404415/1‑140 (MQ=255) tCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCT‑ACGGTTATGTTCCGGTTTGTa < 1:11544100/140‑1 (MQ=255) gccgcTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCT‑ACGGTTATGTTCCGGTTTGTAgg < 2:10371007/140‑1 (MQ=255) aGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTGTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCT‑ACGGTTATGTTCCGGTTTGTAGGCCTGAt < 2:4956776/140‑1 (MQ=255) gCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCT‑ACGGTTATGTTCCGGTTTGTAGGCCTGATa < 2:2586589/140‑1 (MQ=255) gCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCT‑ACGGTTATGTTCCGGCTTGTAGGCCTGATa > 1:9785768/1‑140 (MQ=255) tGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCT‑ACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACg < 1:887319/140‑1 (MQ=255) ttCACTTACCCGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCT‑ACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGca < 2:3441662/140‑1 (MQ=255) ttCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCT‑ACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGca < 1:5040571/140‑1 (MQ=255) ttCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCT‑ACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGca < 1:11060309/140‑1 (MQ=255) ttCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCT‑ACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGca < 1:8249533/140‑1 (MQ=255) ttCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCT‑ACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGca < 1:2208134/140‑1 (MQ=255) ttACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCT‑ACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCg < 1:10902537/140‑1 (MQ=255) ttACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCT‑ACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCg < 1:10422676/140‑1 (MQ=255) ttACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCT‑ACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCg < 1:2396951/140‑1 (MQ=255) tACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCT‑ACGGTTATGTTCCGGTTTGTAGGCCTGATGAGACGCACAGCGt < 1:9990770/140‑1 (MQ=255) aCCCGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGGCGTCGAGGATATTATACGGCTGCCGGCTGCGGCGTGAACGCCCTATCCGGCCT‑ACGGTTATGTTCCGGTTTGTTGGCCTGATAAGACGCACAGCGTc > 2:8568306/1‑140 (MQ=21) aCCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCT‑ACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTc > 2:5140852/1‑140 (MQ=255) ggTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCT‑ACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCAt < 2:9708925/140‑1 (MQ=255) aaGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCT‑ACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAgg > 1:3828999/1‑140 (MQ=255) aaGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCT‑ACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAgg > 1:1444023/1‑140 (MQ=255) aaGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCT‑ACGGTTATGTTCCGGTTTGTAGGCCTGATAAGAAGAACAGATACGCAACAgg > 2:10541065/1‑140 (MQ=37) gACGCATCGGTTTTGCTACTCGTGAGTTACTGAAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAAAGCCCTATCCAGCCT‑ACGGTTATGTTCCGGTTTGTTGGCCTGATAAGACGCACAGCGTCGCATCAGGCa > 2:8852165/1‑140 (MQ=21) aCTCCTCGTTTTTGCGACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCT‑ACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCaa < 2:11352466/140‑1 (MQ=255) cTCATCGTTTTTGCTACTCGGTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCG‑ACGGGTATGTTCCGGTTTGTTGGCCTGATAAGACGCACAGCGTCGCATCAGGCAAc > 1:3647444/1‑140 (MQ=25) aTCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCATCCT‑ACGGTTATGTTCCGGTTTTTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGc > 2:1672912/1‑140 (MQ=255) aTCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCATCCT‑ACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGc > 1:876178/1‑140 (MQ=255) aTCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCT‑ACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGc > 1:2987151/1‑140 (MQ=255) aTCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCT‑ACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGc > 2:8188763/1‑140 (MQ=255) aTCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCT‑ACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGc > 2:607966/1‑140 (MQ=255) aTCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCT‑ACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGAGTCGCATCAGGCAACGGc > 1:9483265/1‑140 (MQ=255) aTCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCT‑ACGGTTAGGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCAGCAGGCAACGGc > 2:9121477/1‑140 (MQ=255) aTCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCAATACACAATAACACAAATG‑ACCGCACTGTAGGCCTGATAAGAGGCCCAGAGACGCATCAGGCGACgga > 1:1695296/1‑139 (MQ=255) aTCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCAGCCCGATGCGGCGTGAACGCCCTATACAGCCT‑ACGGTTATGTTACGGTTTGTATGCCAGATAAGACGCACAGCGTCGCATCAGGCAACGGc > 2:9490544/1‑140 (MQ=25) aTCGTGATTGCTACTCGTTAGTTACTGCAGTCGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCT‑ACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGGCGCATCAGGCACCGGc > 2:8319771/1‑140 (MQ=21) gCTACTCTTTAGTTACTGCACTCGAGGATTTTTTCCGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCT‑ACGGTTATGTTCCGTTTTTTAGGCCTGATAAGACGCACAGCGTCGATTCAGGCAACGGCTGTCGGATg < 1:4508472/140‑1 (MQ=18) cTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTAGCCAGCCT‑ACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATgc < 2:4628203/140‑1 (MQ=255) tACTCGTTAGTTACTGCAGTAGAGGATTTTTTCCGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCT‑ACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATgcg < 1:10671952/140‑1 (MQ=255) aCTCGTTTGTTCCTGCCGTAGCGTATTTTTTCCGGCTGCCGGAGGCGGCGTGACCGCCCTATCCAGCCT‑ACGGTTTTGTTCGGGTTTGTCGGCCTGATAAGACGCACCGCGTCGCATCCGGCAACGGCTGTCGGATgcgg < 1:5546960/140‑1 (MQ=21) gttagttaCTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCT‑ACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTa < 2:9297846/140‑1 (MQ=255) gttagttaCTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCT‑ACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTa < 2:2154188/140‑1 (MQ=255) gttagttaCTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCT‑ACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTa < 2:2963304/140‑1 (MQ=255) tttgttaCTGCAGTTGAGGAATATTTCCGTCTGCCTGATGGGGGGTGAACGCCCTATCCAGCCA‑ACGTTAATTTTCCGGTTTGTTTGACTTTTAAGACGCCCAGCGTCGAATCAGTAAACGGCTGTCGGATGCGGCGTaa < 1:6727036/137‑1 (MQ=255) gCAGTAGAGGATTTTTTCCGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCT‑ACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACCGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTAt < 1:8091999/140‑1 (MQ=255) gCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCT‑ACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTAt < 2:4185372/140‑1 (MQ=255) gCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCT‑ACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTAt < 2:5542768/140‑1 (MQ=255) tAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCT‑ACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGa > 1:1338891/1‑140 (MQ=255) agagGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCT‑ACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGAc > 1:9310240/1‑140 (MQ=255) gagGTTTTTTTACGGCTGCCGGTTGCGGCGTGAACGCCCTAGCCACCCT‑ACGTTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCTGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGAcc < 1:10764752/140‑1 (MQ=17) gtaTTTTTTCCGGCTGCCGGATGCGGCGTTAACGCCCTAACCAGCCT‑ACGGTTATGTGCCGGTTTGTAGGCCTTATAACACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTa < 1:2654721/138‑1 (MQ=17) ggATTTTTTCCGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCT‑ACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTa < 1:10095244/140‑1 (MQ=255) ggATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCT‑ACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTa < 2:7122822/140‑1 (MQ=255) gATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCT‑ACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCACCGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTAc > 1:3132619/1‑140 (MQ=255) gATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCT‑ACGGTGATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCAGCAGGCAACGGCTGTCGGAGGCGGCGTAAACGCCGTAGCCGACCTAc > 1:5728004/1‑140 (MQ=17) ttttttCCGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCT‑ACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACgg < 1:9057226/140‑1 (MQ=255) tttgttACGGCTGCCGGATGCGGCGTGACCGCCCTATCCAGCCT‑ACGGGTATGTGCCGGTTGGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCCACGGCTGGCGGATGCGGCGTAAACGCCTGATGCGGCCTGCgg > 2:10848426/1‑140 (MQ=14) ttACGGCTGCCGGAGGCGGCGTGAACGCCCTATCCAGCCT‑ACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTAt < 1:5909110/140‑1 (MQ=255) cGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCT‑ACGGTTATGTTCCGGTTTGTAGGCCTTATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGtt < 1:6057950/140‑1 (MQ=255) ggCTGCCGGATGCGGCTTGAACGCCCTATCCAGCCT‑ACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACCCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTc < 1:544141/140‑1 (MQ=255) gcggCCGGAGGCGGCGGGAACGCCCTAGCCAGCCT‑ACGGTTAGGTTCCGGTGTGTAGGCCTGATAAGCCGCACCGCGTCGCATCCGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTcc < 1:4135195/137‑1 (MQ=17) gCTGCCGGATGCGGCGTGACCGCCCTATCCAGCCT‑ACGGTTCTGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGGCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTcc < 1:7369660/140‑1 (MQ=255) gCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCT‑ACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTcc < 1:11175232/140‑1 (MQ=255) gCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCT‑ACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTcc < 1:716099/140‑1 (MQ=255) gCTGCCGGAGGCGGCGTTAACGCCCTATCCAGCCT‑ACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTcc < 1:1546943/140‑1 (MQ=255) cGGATGCGGCGTGAACGCCCTATCCAGCCT‑ACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTg < 2:11633208/140‑1 (MQ=255) gtaTGCGGCGTGAACTCCCTATCCAGCCT‑ACGGTTATGTTCCGGTTTGTAGGACTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGt < 2:3233786/138‑1 (MQ=255) aTGCGGCGTGAACGCCCTATCCAGCCT‑ACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAg < 2:6404415/140‑1 (MQ=255) gcgTTAACGCCCTATCCAGCCT‑ACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTg < 1:7710159/140‑1 (MQ=255) gcgTGAACGCCCTCTCCAGCCT‑ACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTg < 2:6242531/140‑1 (MQ=255) gcgTGAACGCCCTATCCAGCCT‑ACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTg < 1:847237/140‑1 (MQ=255) gcgTGAACGCCCTATCCAGCCT‑ACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTg < 2:4790411/140‑1 (MQ=255) gcgTGAACGCCCTATCCAGCCT‑ACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTg < 1:9137510/140‑1 (MQ=255) cgTGAACGCCCTATCCAGCCT‑ACGGTTATGTTCCGGGTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCGTATCCGACCTACGGGTAGGTTCCGTTTGGAGGCCTGa > 1:2047249/1‑140 (MQ=14) aaCGCCCTATCCAGCCT‑ACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCTGATGCGGCTTAAACGCCTTCTCCGACCTACGGTTATGTTCAGTGTGTATGCCTGATaat > 2:7514310/1‑139 (MQ=14) ccTATCCAGCCT‑ACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCTGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGca < 1:4743437/140‑1 (MQ=255) cTATCCAGCCT‑ACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGcac < 2:7971593/140‑1 (MQ=255) cTATCCAGCCT‑ACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGcac < 1:11279154/140‑1 (MQ=255) cTAACCACCCT‑ACGGTTATGGTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGcac < 1:10246504/140‑1 (MQ=255) | AACAAGTCCTGATGTTTCAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTACCCAGCCT‑ACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCAC > NZ_CP025268/3392649‑3392921 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |