| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP025268 | 1,678,164 | (T)8→7 | pseudogene (157/367 nt) | mdtJ ← | multidrug/spermidine efflux SMR transporter subunit MdtJ |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP025268 | 1,678,157 | 0 | T | . | 99.6% | 2720.2 / ‑1.0 | 563 | pseudogene (164/367 nt) | mdtJ | multidrug/spermidine efflux SMR transporter subunit MdtJ |
| Reads supporting (aligned to +/- strand): ref base T (1/1); new base . (307/254); total (308/255) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 589 total aligned reads displayed.
AACACAATCCCGGCGACCAGGGTGGTTAACCCGGCAATTTTCATCAGCGATAAACTTTCGTCGAATAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGATTTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTAATTTCTGTAGCAATAGCCA > NZ_CP025268/1678018‑1678292 | cacaATCCCGGCGACCAGGGTGGTTAACCCGGCAATTTTCATCAGCGATAAACTTTCGTCGAATAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGAttt > 1:3888764/1‑140 (MQ=255) aTCCCGGCGACCAGGGTGGTTAACCCGGCAATTTTCATCAGCGATAAACTTTCGTCGAATAACACAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGAttttttt < 2:1221984/140‑1 (MQ=255) gCGACCAGGGTGGTTAACCCGGCAATTTTCATCAGCGATAAACTTTCGTCGAATAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGc > 2:4853371/1‑140 (MQ=255) gACCAGGGTGGTTAACCCGGCAATTTTCATCAGCGATAAACTTTCGTCGAATAACAAAACGCTAAACAAGGTAATACATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGa < 2:3998395/140‑1 (MQ=255) gggTGGTTAACCCGGCAATTTTCATCAGCGATAAACTTTCGTCGAATAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAagag > 1:840425/1‑140 (MQ=255) ggtggtTAACCCGGCAATTTTCATCAGCGATAAACTTTCGTCGAATAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAagaga < 2:3732913/140‑1 (MQ=255) ggtggtTAACCCGGCAATTTTCATCAGCGATAAACTTTCGTCGAATAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAagaga < 2:6469208/140‑1 (MQ=255) gtggtTAACCCGGCAATTTTCATCAGCGATAAACTTTCGTCGAATAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAagagag < 1:11011529/140‑1 (MQ=255) gtggtTAACCCGGCAATTTTCATCAGCGATAAACTGTCGTCGAATAACAAAACCCTACACAAGGTAAGAAATAATATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAagagag < 2:4237686/140‑1 (MQ=255) ggtTAACCCGGCAATTTTCATCAGCGATAAACTTTCGTCGAATAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGaa < 1:3065543/140‑1 (MQ=255) ggtTAACCCGGCAATTTTCATCAGCGATAAACTTTCGTCGAATAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGaa < 2:5334119/140‑1 (MQ=255) ggtTAACCCGGCAATTTTCATCAGCGATAAACTTTCGTCGAATAACAAAACGCTAAACAAGGTAATAAATAAAATACCGAGACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGaa < 2:10510045/140‑1 (MQ=255) ggtGAACCCGTCAATTTTCATCAGCGATAAACTTTCGTCGAATAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGaa < 2:7458370/140‑1 (MQ=255) aCCCGGCAATTTTCATCAGCGATAAACTTTCGTCGAATAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAatata < 2:3583049/140‑1 (MQ=255) cccGGCAATTTTCATCAGCGATAAACTTTCGTCGAATAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTCAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAatatat > 2:8100596/1‑140 (MQ=255) cccGGCAATTTTCATCAGCGATAAACTTTCGTCGAATAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAatatat > 1:2429637/1‑140 (MQ=255) cccGGCAATTTTCATCAGCGATAAACTTTCGTCGAATAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAatatat > 2:8400315/1‑140 (MQ=255) ccGGCAATTTTCATCAGCGATAAACTTTCGTCGAATAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAatataaa > 1:10039286/1‑138 (MQ=255) ccGGCAATTTTCATCAGCGATAAACTTTCGTCGAATAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAAtatata > 1:7790732/1‑140 (MQ=255) ccGGCAATTTTCATCAGCGATAAACTTTCGTCGAATAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAAtatata < 1:11377549/140‑1 (MQ=255) ggCAATTTTCATCAGCGATAAACTTTCGTCGAATAACAAAACGCTAAACAAGGTTATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACg > 2:78795/1‑140 (MQ=255) gCAATTTTCATCAGCGATAAACTTTCGTCGAATAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGa < 1:4985571/140‑1 (MQ=255) cAATTTTCATCAGCGATAAACTTTCGTCGAATAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGAc > 1:1825302/1‑140 (MQ=255) cAATTTTCATCAGCGATAAACTTTCGTCGAATAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGAc > 1:10624398/1‑140 (MQ=255) aaTTTTCATCAGCGATAAACTTTCGTCGAATAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAAtatata > 1:2642517/1‑135 (MQ=255) aaTTTTCATCAGCGATAAACTTTCGTCGAATAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAAtatata < 2:2642517/135‑1 (MQ=255) tttCATCAGCGATAAACTTTCGTCGAATAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACagag < 2:6166343/140‑1 (MQ=255) tttCATCAGCGATAAACTTTCGTCGAATAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACagag < 1:2108377/140‑1 (MQ=255) tcatcaGCGATAACCTTTCGTCGAATAACAACACGCTAAACAAGGTAATAAATAACATACCGATACCTTCCCACCGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTACCGGCGAAAGAGAGAAATATATACGACAGAGaa < 2:6633946/140‑1 (MQ=255) cGATAAACTTTCGTCGAATAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAagaga > 2:9151526/1‑113 (MQ=255) aTAAACTTTCGTCGAATAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCAcc < 2:2458943/140‑1 (MQ=255) aTAAACTTTCGTCGAATAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCAcc < 1:9636964/140‑1 (MQ=255) aTAAACTTTCGTCGAATAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCAcc < 2:3428819/140‑1 (MQ=255) aTAAACTTTCGTCGAATAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCAcc < 2:5498088/140‑1 (MQ=255) aTAAACTTTCGTCGAATAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCAcc < 1:7517226/140‑1 (MQ=255) tcgtcgAATAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTaa > 1:10812730/1‑140 (MQ=255) tcgtcgAATAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTGAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTaa > 2:10367149/1‑140 (MQ=255) cgtcgAATAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTaaa > 1:8853648/1‑140 (MQ=255) cgtcgAATAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTaaa > 2:4598693/1‑140 (MQ=255) aTAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAagagag < 1:8000361/97‑1 (MQ=255) cAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAgccgc < 2:308524/140‑1 (MQ=255) aaaCGCTAAACAAGGTAATCAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCa < 2:2161699/140‑1 (MQ=255) aaaCGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCa > 1:1974939/1‑140 (MQ=255) tAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTccc > 2:9077142/1‑140 (MQ=255) ggTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTATAATAAAGCCGCCATTTCCCTCACGGa > 2:9460464/1‑140 (MQ=255) ggTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGa > 1:6116662/1‑140 (MQ=255) ggTAATAAATAAAATACCGATACCGTCCAACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGTCGATAGTGAGAAATATATACTACAGAGAACTCATCACCAGCATAAAAATAAAGCCGCCATTTCCCTAACTGa > 2:10229019/1‑140 (MQ=255) aataaataAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGc > 1:6044358/1‑140 (MQ=255) taaataaaATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTc < 2:10899228/140‑1 (MQ=255) taaataaaATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTc > 1:4462538/1‑140 (MQ=255) taaaataCCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGccc < 2:10625918/140‑1 (MQ=255) taaaataCCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGccc < 1:165277/140‑1 (MQ=255) taaaataCCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGccc < 1:5882647/140‑1 (MQ=255) taaaataAAGAGACCGTCCGAGTGCTCATAAGCTACTCCTAAGTC‑TTTTTTTTTAACGGCGAAAGATTGAATTTTATACGACAGAGTAATCATCACCATCATTAAATTAAAGCGGACTTTTCCCTCTCTGACGCTCGccc < 2:9300070/140‑1 (MQ=255) taaaagaCCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGccc < 1:3252042/140‑1 (MQ=255) aaaataCCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCa > 2:7181261/1‑140 (MQ=255) aaataCCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCAt > 1:8910766/1‑140 (MQ=255) aaataCCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCAt > 1:4111398/1‑140 (MQ=255) taCCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTc > 1:3185335/1‑140 (MQ=255) aTACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGa < 1:6950545/140‑1 (MQ=255) cTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGc > 1:8292607/1‑140 (MQ=255) ttCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCg < 2:1490208/140‑1 (MQ=255) tCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGt > 1:9849945/1‑140 (MQ=255) tCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGt > 2:8848444/1‑140 (MQ=255) tCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCAGTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGt > 2:172413/1‑140 (MQ=255) cccACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTa > 2:3858296/1‑140 (MQ=255) cccACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTa > 2:7609055/1‑140 (MQ=255) cccACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTa > 1:10365123/1‑140 (MQ=255) aGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGt < 1:791301/140‑1 (MQ=255) gcgcATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTa > 1:2777787/1‑140 (MQ=255) gcgcATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATAAAAATACAGCCGCCAGTACCCTCACTGACGCTCGCCCAGTTCATTGACAGCGGACCGGtc > 2:11491235/1‑139 (MQ=255) cgcATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTaa > 1:5226475/1‑140 (MQ=255) cgcATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTaa > 1:7334130/1‑140 (MQ=255) gatcaGCTACGCCTAAGGCGA‑TTTGTTTAACGGCGAAAGAGAGTAAGATATAAGACAGAGAAATCATCACCAGCATTAATTTTATTGCGCCATTTCCCTCACTGACGCTCGCCCTTTTCTTTGAAAGCGTAACGGTAAtt > 2:5978331/5‑140 (MQ=255) cATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCg > 2:8242523/1‑129 (MQ=255) aTAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACCGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATGTCATTGACAGCGTACCGGTAAttt > 2:11370694/1‑140 (MQ=255) aGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGATAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATGTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTAATTTCTg < 2:9843631/140‑1 (MQ=255) aGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAACTCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTAATTTCTg < 1:7675503/140‑1 (MQ=255) aGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTAATTTCTg < 2:1898024/140‑1 (MQ=255) aCGCCTAAGGCGA‑TTTTTTTAACGTCGAAAGAGAGAAATATTTACGACAGAGAAATCATCACCAGCATTAAAATAAAGCAGCCATTTCCCTCACTGACGCTCTACCATTTCATTGACAGCGTACCGGTAATTTCTGTAGc > 2:2931011/1‑140 (MQ=255) aCGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAGTCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCGTTTCATTGACAGCGTACCGGTAATTTCTGTAGc < 2:773758/140‑1 (MQ=255) aCGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTAATTTCTGTAGc > 1:5500031/1‑140 (MQ=255) aCGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTAATTTCTGTAGc > 1:3544094/1‑140 (MQ=255) aCGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTAATTTCTGTAGc > 1:5131639/1‑140 (MQ=255) aCGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTAATTTCTGTAGc > 1:6668865/1‑140 (MQ=255) aCGCCTAAGGCGA‑GTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTAATTTCTGTAGc > 1:6444541/1‑140 (MQ=255) cGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTAATTTCTGTAGCa < 2:4392104/140‑1 (MQ=255) cGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTAATTTCTGTAGCa < 1:2296724/140‑1 (MQ=255) gCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTAAt > 1:11216763/1‑129 (MQ=255) gCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTAATTTCTGTAGCaa < 1:11620932/140‑1 (MQ=255) gCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTAATTTCTGTAGCaa > 2:8681871/1‑140 (MQ=255) aaGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTAATTTCTGTAGCAATAGc < 1:11487431/140‑1 (MQ=255) aGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTCATTTCTGTAGCAATAGcc > 1:9359268/1‑140 (MQ=255) aGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTAATTTCTGTAGCAATAGcc > 2:6823982/1‑140 (MQ=255) aGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTAATTTCTGTAGCAATAGcc > 2:5800951/1‑140 (MQ=255) aGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTAATTTCTGTAGCAATAGcc < 1:9061386/140‑1 (MQ=255) aGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTAATTTCTGTAGCAATAGcc > 1:9114358/1‑140 (MQ=255) ggCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTACTTTCTGTAGCAATAGCCa > 1:4333666/1‑140 (MQ=255) ggCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTAATTTCTGTAGCAATAGCCa > 1:4657779/1‑140 (MQ=255) ggCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTAATTTCTGTAGCAATAGCCa > 2:283649/1‑140 (MQ=255) | AACACAATCCCGGCGACCAGGGTGGTTAACCCGGCAATTTTCATCAGCGATAAACTTTCGTCGAATAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGATTTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTAATTTCTGTAGCAATAGCCA > NZ_CP025268/1678018‑1678292 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |