| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP025268 | 2,997,537 | (A)8→7 | intergenic (‑140/+83) | CXP41_RS15625 ← / ← CXP41_RS24400 | response regulator transcription factor/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP025268 | 2,997,530 | 0 | A | . | 93.3% | 56.5 / ‑2.1 | 15 | intergenic (‑133/+90) | CXP41_RS15625/CXP41_RS24400 | response regulator transcription factor/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (1/0); new base . (4/10); total (5/10) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.33e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CCTGAGTGTAAATGCTTTAACGCATTCATTTATAATCATCCCTTCCATTATTATTATAAGCAAAATCCAAAGAATACATTGATGAAATAATAATGAAATATAATTAAAAATAAAATTTTTGCGTAAAAAAAATACCACAGGCATTAAAAAATCATGAGATGATTAAAATATTACAATTAGATTATATTCAAATCATTAAACTTGAGCCAGGGAGTTATAAGTCCTCAGGGCTTGCCAAAACAGAATTATT > NZ_CP025268/2997406‑2997655 | ccTGAGTGTAAATGCTTTAACGCATTCATTTATAATCATCCCTTCCATTATTATTATAAGCAAAATCCAAAGAATACATTGATGAAATAATAATGAAATATAATTAAAAATAAAATTTTTGCGT‑AAAAAAATACCACAgg < 2:3981441/140‑1 (MQ=255) ttAAATGCTTTAACGCATTCATTTATAATCATCCCTTCCATTATTATTATAAGCAAAATCCAAAGAATACATTGATGAAATAATAATGAAATATAATTAAAAATAAAATTTTTGCGT‑AAAAAAATACCACAGGCATTaaa < 2:11618120/139‑1 (MQ=255) gtAAATGATTTAACGATGTTATTTTTTATCATCCATTCCATTATTATTATAAGCAATATCCTAAGAATACTTTGATGAAATAATAATGAAATATAAATAAAAATAAATTTTTTGCGT‑AAAAAATTAACACTGTCATTaaa < 2:11617908/140‑1 (MQ=255) aaTGCTTTAACGCATTCATTTATAATCATCCCTTCCATTATTATTATAAGCAAAATCCAAAGAATACATTGATGAAATAATAATGAAATATAATTAAAAATAAAATTTTTGCGT‑AAAAAAATACCACAGGCATTaaaaaa > 1:1302787/1‑140 (MQ=255) cattTATAATCATCCCTTCCATTATTATTATAAGCAAAATCCAAAGAATACATTGATGAAATAATAATGAAATATAATTAAAAATAAAATTTTTGCGT‑AAAAAAATACCACAGGCATTAAAAAATCATGAGATGATTaaa < 1:4667522/140‑1 (MQ=255) tataATCATCCCTTCCATTATTATTATAAGCAAAATCCAAAGAATACATTGATGAAATAATAATGAAATATAATTAAAAATAAAATTTTTGCGT‑AAAAAAATACCACAGGCATTAAAAAATCATGAGATGATTAAAatat < 2:8660326/140‑1 (MQ=255) atcCCTTCCATTATTATTATAAGCAAAATCCAAAGAATACATTGATGAAATAATAATGAAATATAATTAAAAATAAAATTTTTGCGT‑AAAAAAATACCACAGGCATTAAAAAATCATGAGATGATTAAAATATTACAAtt > 2:2505112/1‑140 (MQ=255) atcCCTTCCATTATTATTATAAGCAAAATCCAAAGAATACATTGATGAAATAATAATGAAATATAATTAAAAATAAAATTTTTGCG‑AAAAAAAATAACACAGGCATTAAAAAATCATGATATGATTAAAATATTACAAtt > 2:2505506/1‑140 (MQ=255) atcCCTTACATTATTATTATAAGCAAAATCCAAAGAATACATTGATGAAATAATAATGAAATATAATAATAAATAAAAATTTTGAGT‑AAAAATATAAAACAGGCATTAAAAAATCATGAGATGAGTGAAATATTACCAtt > 2:9812630/1‑140 (MQ=255) ttCCATTATTATTATAAGCAAAATCCAAAGAATACATTGATGAAATAATAATGAAATATAATTAAAAATAAAATTTTTGCGT‑AAAAAAATACCACAGGCATTAAAAAATCATGAGATGATTAAAATATTACAATTAGAtt < 1:128689/140‑1 (MQ=255) aaGACTACCTTGATTAAATTATAATTCAATATAATTAAAAATAAAATTTTTGAGT‑ACAAAAATACCACAGGCATTAAAAATTCATGAGATGATTAAAATATTACAATTAGATTATATTAAAATCATTAAACATGAGcctt < 2:8754053/140‑3 (MQ=255) atgaAATAATAATGAAATATAATTAAAAATAAAATTTTTGCGT‑AAAAAAATACCACAGGCATTAAAAAATCATGAGATGATTAAAATATTACAATTAGATTATATTCAAATCATTAAACTTGAGCCAGGGAGCTATAAGt > 1:3873478/1‑140 (MQ=255) ataataatGAAATATAATTAAAAATAAAATTTTTGCGT‑AAAAAAATACCACAGGCATTAAAAAATCATGAGATGATTAAAATATTACAATTAGATTATATTCAAATCATTAAACTTGAGCCAGGGAGCTATAAGTCCTCa < 2:5385176/140‑1 (MQ=255) ataaaatTTTTGCGT‑AAAAAACTACCTAAGGCATTAAAAATTCATGAGATTATTAAAATATTTCACTTAGATTATATTCAAATCATTAAACTTGAGCCAGGGAGCTAAAAGTCCTCAGGGCTTGCCAAAACAGAattatt < 2:8000090/140‑1 (MQ=255) ataaaatTTTTGCGT‑AAAAAAATACCACATGCATTAAAAAATCATGAGATGATTAAAATATTACAATTAGATTATATTCAAATCATTAAACTTGAGCCAGGGAGCTATAAGTCCTCAGGGCTTGCCAAAACAGAattatt < 2:8757499/140‑1 (MQ=255) | CCTGAGTGTAAATGCTTTAACGCATTCATTTATAATCATCCCTTCCATTATTATTATAAGCAAAATCCAAAGAATACATTGATGAAATAATAATGAAATATAATTAAAAATAAAATTTTTGCGTAAAAAAAATACCACAGGCATTAAAAAATCATGAGATGATTAAAATATTACAATTAGATTATATTCAAATCATTAAACTTGAGCCAGGGAGTTATAAGTCCTCAGGGCTTGCCAAAACAGAATTATT > NZ_CP025268/2997406‑2997655 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |