BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NZ_CP025268	674,649	+T	pseudogene (947/977 nt)	ybeQ ←	SEL1‑like repeat protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NZ_CP025268	674,649	1	.	T	99.4%	2632.3 / 3.5	696	pseudogene (947/977 nt)	ybeQ	SEL1‑like repeat protein
Reads supporting (aligned to +/- strand): ref base . (4/0); new base T (315/375); total (320/376)
Fisher's exact test for biased strand distribution p-value = 4.42e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.24e-01

Only 100 of 721 total aligned reads displayed.

TGGTCATGACCAGTTCCAGAGACGCCCGTTTGAGCCGTAATAGTCTGATTTCGCACAGCAATAAAGAGAATATGGGCCGAATGAAATTCCCCGGCCCTTGTTTTTATCTTTACAGTAAATCTTCAGTCTCACGAATTTC‑C‑GACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTCGAGAGCCTGTCGGAGATCGACAGGTCTTCCTTCTCCGTAGTGATACATAATGGCCAGGTTATACCAGGCAGTGGCGTCATTGCA  >  NZ_CP025268/674510‑674779

      tGACCAGTTCCAGAGACGCCCGTTTGAGCCGTAATAGTCTGATTTCGCACAGCAATAAAGAGAATATGGGCCGAATGAAATTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTTC‑CTGACTg                                                                                                                               >  2:5572389/1‑140 (MQ=255)

          cAGTTCCAGAGACGCCCGTTTGAGCCGTAATAGTCTGATTTCGCACAGCAATAAAGAGAATATGGGCCGAATGAAATTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTTC‑CTGACTGACAt                                                                                                                           >  1:8535394/1‑140 (MQ=255)

                  gagaCGCCCGTTTGAGCCGTAATAGTCTGATTTCGCACAGCAATAAAGAGAATATGGGCCGAATGAAATTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTTC‑CTGACTGACATCTCTGGtt                                                                                                                   >  2:6333373/1‑140 (MQ=255)

                     aCGCCCGTTTGAGCCGTAATAGTCTGATTTCGCACAGCAATAAAGAGAATATGGGCCGAATGAAAGTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTTC‑CTGACTGACATCTCTGGTTCCg                                                                                                                <  1:10337603/140‑1 (MQ=255)

                       gCCCGTTTGAGCCGTAATAGTCTGATTTCGCACAGCCATCAAGAGAATATGGGCCGAATGAAATTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTTC‑CTGACTGACATCTCTGGTTCCGGa                                                                                                              >  2:3224569/1‑140 (MQ=255)

                       gCCCGTTTGAGCCGTAATAGTCTGATTTCGCACAGCAATAAAGAGAATATGGGCCGAATGAAATTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTTC‑CTGACTGACATCTCTGGTTCCGGa                                                                                                              >  1:9884391/1‑140 (MQ=255)

                       gCCCGTTTGAGCCGTAATAGTCTGATTTCGCACAGCAATAAAGAGAATATGGGCCGAATGAAATTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTTC‑CTGACTGACATCTCTGGTTCCGGa                                                                                                              >  1:7561062/1‑140 (MQ=255)

                       gCCCGTTTGAGCCGTAATAGTCTGATTTCGCACAGCAATAAAGAGAATATGGGCCGAATGAAATTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTTC‑CTGACTGACATCTCTGGTTCCGGa                                                                                                              >  2:199113/1‑140 (MQ=255)

                       gCCCGTTTGAGCCGTAATAGTCTGATTTCGCACAGCAATAAAGAGAATATGGGCCGAATGAAATTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTTC‑CTGACTGACATCTCTGGTTCCGGa                                                                                                              >  1:5055492/1‑140 (MQ=255)

                       gCCCGTTTGAGCCGTAATAGTCTGATTTCGCACAGCAATAAAGAGAATATGGGCCGAATGAAATTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTTC‑CTGACTGACATCTCTGGTTCCGGa                                                                                                              >  1:1709000/1‑140 (MQ=255)

                       gCCCGTTTGAGCCGTAATAGTCTGATTTCGCACAGCAATAAAGAGAATATGGGCCGAATGAAATTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTTC‑CTGACTGACATCTCTGGTTCCGGa                                                                                                              >  2:8601333/1‑140 (MQ=255)

                       gCCCGTTTGAGCCGTAATAGTCTGATTTCGCACAGCAATAAAGAGAATATGGGCCGAATGAAATTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTTC‑CTGACTGACATCTCTGGTTCCGGa                                                                                                              >  2:8386119/1‑140 (MQ=255)

                       gCCCGTTTGAGCCGTAATAGTCTGATTTCGCACAGCAATAAAGAGAATATGGGCCGAATGAAATTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTTC‑CTGACTGACATCTCTGGTTCCGGa                                                                                                              >  2:3916973/1‑140 (MQ=255)

                       gCCCGTTTGAGCCGTAATAGTCTGATTTCGCACAGCAATAAAGAGAATATGGGCCGAATGAAATTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTTC‑CTGACTGACATCTCTGGTTCCGGa                                                                                                              >  1:3330136/1‑140 (MQ=255)

                       gCCCGTTTGAGCCGTAATAGTCTGATTTCGCACAGCAATAAAGAGAATATGGGCCGAATGAAATTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTTC‑CTGACTGACATCTCTGGTTCCGGa                                                                                                              >  2:5295112/1‑140 (MQ=255)

                          cGTTTGAGCCGTAATAGTCTGATTTCGCACAGCAATAAAGAGAATATGGGCCGAATGAAATTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTTC‑CTGACTGACATCTCTGGTTCCGGATGa                                                                                                           <  2:8166838/140‑1 (MQ=255)

                               gAGCCGTAATAGTCTGATTTCGCACAGCAATAAAGAGAATATGTGCCGAATGAAATTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTTC‑CTGACTGACATCTCTGGTTCCGGATGACTGaa                                                                                                      <  2:10389532/140‑1 (MQ=255)

                               gAGCCGTAATAGTCTGATTTCGCACAGCAATAAAGAGAATATGGGCCGAATGAAATTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTTC‑CTGACTGACATCTCTGGTTCCGGATGACTGaa                                                                                                      <  1:10419294/140‑1 (MQ=255)

                               gAGCCGTAATAGTCTGATTTCGCACAGCAATAAAGAGAATATGGGCCGAATGAAATTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTTC‑CTGACTGACATCTCTGGTTCCGGATGACTGaa                                                                                                      <  1:3928412/140‑1 (MQ=255)

                               gAGCCGTAATAGTCTGATTTCGCACAGCAATAAAGAGAATATGGGCCGAATGAAATTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTTC‑CTGACTGACATCTCTGGTTCCGGATGACTGaa                                                                                                      <  1:8644390/140‑1 (MQ=255)

                               gAGCCGTAATAGTCTGATTTCGCACAGCAATAAAGAGAATATGGGCCGAATGAAATTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTTC‑CTGACTGACATCTCTGGTTCCGGATGACTGaa                                                                                                      <  1:2674845/140‑1 (MQ=255)

                               gAGCCGTAATAGTCTGATTTCGCACAGCAATAAAGAGAATATGGGCCGAATGAAATTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTTC‑CTGACTGACATCTCTGGTTCCGGATGACTGaa                                                                                                      <  1:6734304/140‑1 (MQ=255)

                               gAGCCGTAATAGTCTGATTTCGCACAGCAATAAAGAGAATATGGGCCGAATGAAATTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTTC‑CTGACTGACATCTCTGGTTCCGGATGACTGaa                                                                                                      <  1:11421548/140‑1 (MQ=255)

                                aGCCGTAATAGTCTGATTTCGCACAGCAATAAAGAGAATATGGGCCGAATGAAATTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTTC‑CTGACTGACATCTCTGGTTCCGGATGACTGAAc                                                                                                     >  2:9052467/1‑140 (MQ=255)

                                         aGTCTGATTTCGCACAGCAATAAAGAGAATATGGGCCGAATGAAATTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTTC‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATa                                                                                            <  2:7390734/140‑1 (MQ=255)

                                         aGTCTGATTTCGCACAGCAATAAAGAGAATATGGGCCGAATGAAATTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCCTCAGTCTCACGAATTTC‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATa                                                                                            <  1:6355444/140‑1 (MQ=255)

                                         aGTCTGAGTTCGCACAGCAATAAAGAGAATATGGGCCGAATGAAAGTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTTC‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATa                                                                                            <  2:9256304/140‑1 (MQ=255)

                                          gTCTGATTTCGCACAGCAATAAAGAGAATATGGGCCGAATGAAATTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTTC‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATAc                                                                                           <  2:10159035/140‑1 (MQ=255)

                                           tCTGATTTCGCACAGCAATAAAGAGAATATGGGCCGAATGAAATTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTTC‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACa                                                                                          <  1:351975/140‑1 (MQ=255)

                                           tCTGATTTCGCACAGCAATAAAGAGAATATGGGCCGAATGAAATTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTTC‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACa                                                                                          >  1:4472950/1‑140 (MQ=255)

                                           tCTGATTTCGCACAGCAATAAAGAGAATATGGGCCGAATGAAATTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTTC‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACa                                                                                          >  1:827847/1‑140 (MQ=255)

                                           tCTGATTTCGCACAGCAATAAAGAGAATATGGGCCGAATGAAATTCCCCGGCCCTTGATTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTTC‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACa                                                                                          <  1:5855350/140‑1 (MQ=255)

                                           tCTGATTTCGCACAGCAATAAAGAGAATAGGGGCCGAATGAAATTCCCCGGCCCTTGTATTTATCTCTACAGTAAATCTACAGTCTCACGAATTTC‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACa                                                                                          <  2:7647624/140‑1 (MQ=255)

                                             tGATTTCGCACAGCAATAAAGAGAATATGGGCCGAATGAAATTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTTC‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAgg                                                                                        >  2:6769618/1‑140 (MQ=255)

                                             tGATTTCGCACAGCAATAAAGAGAATATGGGCCGAATGAAATTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTTC‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAgg                                                                                        >  2:7006205/1‑140 (MQ=255)

                                               aTTTCGCACAGCAATAAAGAGAATATGGGCCGAATGAAATTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTTC‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTc                                                                                      >  1:8978577/1‑140 (MQ=255)

                                               aTTTCGCACAGCAATAAAGAGAATATGGGCCGAATGAAATTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTTC‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTc                                                                                      >  1:6544788/1‑140 (MQ=255)

                                                    gCACAGCAATAAAGAGAATATGGGCCGAATGAAATTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTTC‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTCGagag                                                                                 <  2:8785754/140‑1 (MQ=255)

                                                     cacaGCAATATAGAGAATATGGGCCGAATGAAATTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTTC‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTCGAGAGc                                                                                <  2:61191/140‑1 (MQ=255)

                                                     cacaGCAATAAAGAGAATATGGGCCGAATGAAATTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTTC‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTCGAGAGc                                                                                <  2:3815965/140‑1 (MQ=255)

                                                     cacaGCAATAAAGAGAATATGGGCCGAATGAAATTCCCCGGCCCTTGATTTAATCTCTACAGTAAAACATCAGTCACACGAATTTC‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTAAGATACAGGTCGAGAGc                                                                                >  2:7492544/1‑140 (MQ=255)

                                                            aTAAAGAGAATATGGGCCGAATGAAATTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTTC‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTCGAGAGCCTGTCgg                                                                         <  1:364976/140‑1 (MQ=255)

                                                             tAAAGAGAATATGGGCCGAATGAAATTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTTC‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTCGAGAGCCTGTCGga                                                                        >  2:4035541/1‑140 (MQ=255)

                                                             tAAAGAGAATATGGGCCGAATGAAATTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTTC‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTCGAGAGCCTGTCGga                                                                        >  2:11287152/1‑140 (MQ=255)

                                                             tAAAGAGAATATGGGCCGAATGAAATTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTTC‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTCGAGAGCCTGTCGga                                                                        <  1:11529216/140‑1 (MQ=255)

                                                                agagAATATGGGCCGAATGAAATTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTTC‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTCGAGAGCCTGTCGGAGAt                                                                     <  2:3014987/140‑1 (MQ=255)

                                                                  agaATATGGGCCGAATGAAATTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTTC‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTCGAGAGCCTGTCGGAGATCg                                                                   >  1:4926411/1‑140 (MQ=255)

                                                                  agaATATGGGCCGAATGAAATTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTTC‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTCGAGAGCCTGTCGGAGATCg                                                                   >  2:1753085/1‑140 (MQ=255)

                                                                   gaATATGGGCCGAATGAAAGTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTTC‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTCGAGAGCCTGTCGGAGATCGa                                                                  <  2:5842759/140‑1 (MQ=255)

                                                                    aaTATGGGCCGAATGAAATTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTTC‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTCGAGAGCCTGTCGGTGATCGAc                                                                 >  1:11060964/1‑140 (MQ=255)

                                                                    aaTATGGGCCGAATGAAATTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTTC‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTCGAGAGCCTGTCGGAGATCGAc                                                                 >  2:2284968/1‑140 (MQ=255)

                                                                    aaTATGGGCCGAATGAAATTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTTC‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTCGAGAGCCTGTCGGAGATCGAc                                                                 >  2:9589914/1‑140 (MQ=255)

                                                                    aaTATGGGCCGAATGAAATTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGACTCACGAAATTCAT‑GACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTCGAGAGCCTGTCGGAGATCGAc                                                                 >  2:2560127/1‑140 (MQ=255)

                                                                     atatGGGCCGAATGAAATTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTTC‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTCGAGAGCCTGTCGGAGATCGACa                                                                >  1:9455189/1‑140 (MQ=255)

                                                                     atatGGGCCGAATGAAATTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTTC‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTCGAGAGCCTGTCGGAGATCGACa                                                                <  1:3122950/140‑1 (MQ=255)

                                                                         gggCCGAATGAAATTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTACAGACTCACGAAGTTC‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTCGAGAGCCTGTCGGAGATCGACAgggc                                                            >  2:1303792/1‑138 (MQ=255)

                                                                          ggCCGAATGAAATTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTTC‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTCGAGAGCCTGTCGGAGATCGACAGGTct                                                           <  2:1690722/140‑1 (MQ=255)

                                                                          ggCCGAATGAAATTCCCCGGCCCTTGTTTTAATCTCTACAGTAAATCTTCAGTCTAACGAATTTC‑CAGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTCGAGAGACTGTCGGAGATCGACAGGTct                                                           >  1:10960959/1‑140 (MQ=255)

                                                                            ccGCATGAAATTCCCCGGCCCTTGTTTTTATCTCTACAGTAACTCTTCAGTCTCACGAATTTC‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTCGAGAGCCTGTCGGAGATCGACAGGTcttc                                                         <  2:7991489/140‑1 (MQ=255)

                                                                            ccGAATGAAATTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTTC‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTCGAGAGCCTGTCGGAGATCGACAGGTcttc                                                         <  1:9263437/140‑1 (MQ=255)

                                                                            ccGAATGAAATTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTTC‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTCGAGAGCCTGTCGGAGATCGACAGGTcttc                                                         <  1:1970947/140‑1 (MQ=255)

                                                                            ccGAATGAAATTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTTC‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTCGAGAGCCTGTCGGAGATCGACAGGTcttc                                                         <  1:7030521/140‑1 (MQ=255)

                                                                             cGAATGAAATTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTTC‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTCGAGAGCCTGTCGGAGATCGACAGGTcttcc                                                        >  2:111055/1‑140 (MQ=255)

                                                                              gAATGAAATTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTTC‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTCGAGAGCCTGTCGGAGATCGACAGGTcttcct                                                       >  1:2502178/1‑140 (MQ=255)

                                                                                  gAAATTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTTC‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTCGAGAGCCTGTCGGAGATCGACAGGTCTTCCTtctc                                                   <  2:971198/140‑1 (MQ=255)

                                                                                    aaTTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTTC‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTCGAGAGCCTGTCGGAGATCGACAGGTCTTCCTTCTCCg                                                 <  1:7781067/140‑1 (MQ=255)

                                                                                    aaTTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTTC‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTCGAGAGCCTGTCGGAGATCGACAGGTCTTCCTTCTCCg                                                 <  1:4296463/140‑1 (MQ=255)

                                                                                      ttCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTTC‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTCGAGAGCCTGTCGGAGATCGACAGGTGTTCCTTCTCCGTa                                               <  1:10020363/140‑1 (MQ=255)

                                                                                      ttCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTTC‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTCGAGAGCCTGTCGGAGATCGACAGGTCTTCCTTCTCCGTa                                               <  2:10770029/140‑1 (MQ=255)

                                                                                      ttCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTTC‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTCGAGAGCCTGTCGGAGATCGACAGGTCTTCCTTCTCCGTa                                               <  2:4395459/140‑1 (MQ=255)

                                                                                      ttCCCCGGCCCTTGTTTCTATCTCTACAGTAAATCTTCAGTCTCACGAATTTC‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTCGAGAGCCTGTCGGAGATCGACAGGTCTTCCTTCTCCGTa                                               <  1:1504303/140‑1 (MQ=255)

                                                                                       tCCCCGGCCATTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTTC‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTCGAGAGCCTGTCGGAGATCGACAGGTCTTCCTTCTCCGTAg                                              <  1:5265634/140‑1 (MQ=255)

                                                                                          ccGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTTC‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTCGAGAGCCTGTCGGAGATCGACAGGTCTTCCTTCTCCGTAGTGa                                           <  1:7341368/140‑1 (MQ=255)

                                                                                             gCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTTC‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTCGAGAGCCTGTCGGAGATCGACAGGTCTTCCTTCTCCGTAGTGATAc                                        >  1:9620176/1‑140 (MQ=255)

                                                                                               ccTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTTC‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTCGAGAGCCTGTCGGAGATCGACAGGTCTTCCTTCTCCGTAGTGATACAt                                      <  1:301774/140‑1 (MQ=255)

                                                                                                cTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTTC‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTCGAGAGCCTGTCGGAGATCGACAGGTCTTCCTTCTCCGTAGTGATACATa                                     <  2:6488408/140‑1 (MQ=255)

                                                                                                    tttttATCTCTACAGTAAATCTTCAGTCTCACGAATTTC‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTCGAGAGCCTGTCGGAGATCGACAGGTCTTCCTTCTCCGTAGTGATACATAATgg                                 <  1:10806470/140‑1 (MQ=255)

                                                                                                    tttttATCTCTACAGTAAATCTTCAGTCTCACGAATTTC‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTCGAGAGCCTGTCGGAGATCGACAGGTCTTCCTTCTCCGTAGTGATACATAATgg                                 <  2:7223785/140‑1 (MQ=255)

                                                                                                     ttttATCTCTACAGTAAATCTTCAGTCTCACGAATTTC‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTCGAGAGCCTGTCGGAGATCGACAGGTCTTCCTTCTCCGTAGTGATACATAATGGc                                <  2:11468618/140‑1 (MQ=255)

                                                                                                     ttttAACTCTACAGTAAATCTACAGTCTCACGAATTTC‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTCGAGAGCCTGTCGGAGATCGACAGGTCTTCCTTCTCCGTAGTGATACATAATGGc                                <  1:4750605/140‑1 (MQ=255)

                                                                                                        tATCTCTACAGTAAATCTTCAGTCTCACGAATTTC‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTCGAGAGCCTGTCGGAGATCGACAGGTCTTCCTTCTCCGTAGTGATACATAATGGCCAg                             >  1:1268061/1‑140 (MQ=255)

                                                                                                        tATCTCTACAGTAAATCTTCAGTCTCACGAATTTC‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTCGAGAGCCTGTCGGAGATCGACAGGTCTTCCTTCTCCGTAGTGATACATAATGGCCAg                             >  1:4070160/1‑140 (MQ=255)

                                                                                                         aTCTCTACAGTACATCTTCAGTCTCACGAATTTC‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTCGAGAGCCTGTCGGAGATCGACAGGTCTTCCTTCTCCGTAGTGATACATAATGGCCAgg                            <  1:7148853/140‑1 (MQ=255)

                                                                                                         aTCTCTACAGTAAATCTTCAGTCTCACGAATTTC‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTCGAGAGCCTGTCGGAGATCGACAGGTCTTCCTTCTCCGTAGTGATACATAATGGCCAgg                            >  1:2370434/1‑140 (MQ=255)

                                                                                                         aTCTCTACAGTAAATCTTCAGTCTCACGAATTTC‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGAGACAGGTCGAGAGCCTGTCGGAGATCGACAGGTCTTCCTTCTCCGTAGTGATACATAATGGCCAgg                            <  2:5165163/140‑1 (MQ=255)

                                                                                                         aTCTCTAAAGTAAATCTTCAGTCTCACGAATTTC‑CTGACTGACCTCTCTGGTTCCGGATGACTGAACTTTACGATACAGTTCGAGAGCCTGTCGGAGATCGACAGGTCTTCCTTCTCCGTAGTGATACATAATGGCCAgg                            <  2:3484269/140‑1 (MQ=255)

                                                                                                             ctACAGTAAATCTTCAGTCTCACGAATTTC‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTCGAGAGCCTGTCGGAGATCGACAGGTCTTCCTTCTCCGTAGTGATACATAATGGCCAGGTtat                        >  1:6071447/2‑140 (MQ=255)

                                                                                                             ctACAGTAAATCTTCAGTCTCACGAATTTC‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTCGAGAGCCTGTCGGAGATCGACAGGTCTTCCTTCTCCGTAGTGATACATAATGGCCAGGTtat                        >  1:6439143/2‑140 (MQ=255)

                                                                                                              tACAGTAAATCTTCAGTCTCACGAATTTC‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTCGAGAGCCTGTCGGAGATCGACAGGTCTTCCTTCTCCGTAGTGATACATAATGGCCAGGTtata                       >  1:8012237/1‑140 (MQ=255)

                                                                                                                cAGTAAATCTTCAGTCTCACGAATTTC‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTCGAGAGCCTGTCGGAGATCGACAGGTCTTCCTTCTCCGTAGTGATACATAATGGCCAGGTTATAcc                     <  1:11223393/140‑1 (MQ=255)

                                                                                                                  gTAAATCTTCAGTCTCACGAATTTC‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTCGAGAGCCTGTCGGAGATCGACAGGTCTTCCTTCTCCGTAGTGATACATAATGGCCAGGTTATACCAg                   <  1:2861447/140‑1 (MQ=255)

                                                                                                                   tAAATCTTCAGTCTCACGAATTTC‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTCGAGAGCCTGTCGGAGATCGACAGGTCTTCCTTCTCCGTAGTGATACATAATGGCCAGGTTATACCAgg                  >  1:5475266/1‑140 (MQ=255)

                                                                                                                    aaaTCTTCAGTCTCACGAATTTC‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTCGAGAGCCTGTCGGAGATCGACAGGTCTTCCTTCTCCGTAGTGATACATAATGGCCAGGTTATACCAGGc                 >  1:5004403/1‑140 (MQ=255)

                                                                                                                     aaTCTTCAGTCTCACGAATTTC‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTCGAGAGCCTGTCGGAGATCGACAGGTCTTCCTTCTCCGTAGTGATACATAATGGCCAGGTTATACCAGGCa                >  2:2700189/1‑140 (MQ=255)

                                                                                                                         ttCAGTCTCACGAATTTC‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTCGAGAGCCTGTCGGAGATCGACAGGTCTTCCTTCTCCGTAGTGATACATAATGGCCAGGTTATACCAGGCAGTgg            <  1:2099947/140‑1 (MQ=255)

                                                                                                                           cAGTCTCACGAATTTC‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTCGAGAGCCTGTCGGAGATCGACAGGTCTTCCTTCTCCGTAGTGATACATAATGGCCAGGTTATACCAGGCAGTGGCg          >  1:3799671/1‑140 (MQ=255)

                                                                                                                             gTCTCACGAATTTC‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTCGAGAGCCTGTCGGAGATCGACAGGTCTTCCTTCTCCGTAGTGATACATAATgg                                 <  2:2129668/115‑1 (MQ=255)

                                                                                                                                 cACGAATTTC‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTCGAGAGCCTGTCGGAGATCGACAGGTCTTCCTTCTCCGTAGTGATACATAATGGCCAGGTTATACCAGGCAGTGGCGTCATTg    >  2:4866808/1‑140 (MQ=255)

                                                                                                                                 cACGAATTTC‑CTGACTGACATCTCTGGTTCCGGATGACGGCACTTTACGATACAGGTCGAGAGCCTGTCGGAGATCGACAGGTCTTCCTGCTCCGTAGTGATACATAATGGCCAGGTTATACCAGGCAGTGGCGTCATTg    >  2:7146614/1‑140 (MQ=255)

                                                                                                                                  aCGAATTTC‑CTGACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTCGAGAGCCTGTCGGAGATCGACAGGTCTTCCTTCTCCGTAGTGATACATAATGGCCAGGTTATACCAGGCAGTGGCGTCATTGc   >  2:1049532/1‑140 (MQ=255)

TGGTCATGACCAGTTCCAGAGACGCCCGTTTGAGCCGTAATAGTCTGATTTCGCACAGCAATAAAGAGAATATGGGCCGAATGAAATTCCCCGGCCCTTGTTTTTATCTTTACAGTAAATCTTCAGTCTCACGAATTTC‑C‑GACTGACATCTCTGGTTCCGGATGACTGAACTTTACGATACAGGTCGAGAGCCTGTCGGAGATCGACAGGTCTTCCTTCTCCGTAGTGATACATAATGGCCAGGTTATACCAGGCAGTGGCGTCATTGCA  >  NZ_CP025268/674510‑674779

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`