| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP025268 | 1,629,176 | (T)7→8 | pseudogene (141/392 nt) | ydeI ← | YdeI family stress tolerance OB fold protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP025268 | 1,629,169 | 1 | . | T | 93.0% | 1054.1 / 63.2 | 298 | pseudogene (148/392 nt) | ydeI | YdeI family stress tolerance OB fold protein |
| Reads supporting (aligned to +/- strand): ref base . (1/20); new base T (78/199); total (79/219) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.90e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 311 total aligned reads displayed.
GCCGCAGGAATAACGACATTAATTTCACCGCTCTTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑A‑TTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCAACGCATAAGGCATGACAAGAAAACTTGCTAATACAATGGCCTG > NZ_CP025268/1629034‑1629307 | cGCAGGAATAACGACATTAATTTCACCGCTCTTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑A‑ttt‑tt‑t < 2:6843119/140‑1 (MQ=255) ggAATAACGACATTAATTTCACCGCTCTTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑A‑ttt‑tt‑t‑ttgc < 2:6671857/140‑4 (MQ=255) aaCGACATTAATTTCACCGCTCTTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATTTT‑TT‑T‑TGcatcat < 1:5614004/140‑1 (MQ=255) aaCGACATTAATTTCACCGCTCTTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATTTT‑TT‑T‑TGcatcat < 2:7570041/140‑1 (MQ=255) cATTAATTTCACCGCTCTTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATTTT‑TT‑T‑TGCATCATCGGtt < 2:11375622/140‑1 (MQ=255) tAATTTCACCGCTCTTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATTTT‑TT‑T‑TGCATCATCGGTTCcg > 2:10237288/1‑140 (MQ=255) aCCGCTCTTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGc > 1:3256400/1‑140 (MQ=255) ccGCTCTTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGcc < 2:2420217/140‑1 (MQ=255) ccGCTCTTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGcc < 2:3374336/140‑1 (MQ=255) ccGCTCTTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGcc < 1:3368663/140‑1 (MQ=255) ccGCTCTTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGcc < 2:2810076/140‑1 (MQ=255) ccGCTCTTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGcc < 1:9624288/140‑1 (MQ=255) ccGCTCTTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGcc < 1:10060737/140‑1 (MQ=255) cGCTCTTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCa > 1:8288665/1‑140 (MQ=255) ctctTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCAtc < 1:8182805/140‑1 (MQ=255) ctctTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCAtc < 1:2750431/140‑1 (MQ=255) ctctTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCAtc < 2:2584365/140‑1 (MQ=255) ctctTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCAtc < 1:5546470/140‑1 (MQ=255) tctTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCAtct < 1:755834/140‑1 (MQ=255) tctTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCAtct > 1:7364160/1‑140 (MQ=255) aTCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTa > 1:7299269/1‑140 (MQ=255) gAAAAACGTCACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCa < 1:2422205/140‑1 (MQ=255) gAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCa > 2:9051138/1‑140 (MQ=255) aaaaaCGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCAt < 1:6025111/140‑1 (MQ=255) tAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAggcgg < 2:3159495/140‑1 (MQ=255) tAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAggcgg < 2:211072/140‑1 (MQ=255) tAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGG‑TTTTGCGAAATCAACGGTC‑ATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAggcggc < 1:5021262/140‑1 (MQ=255) aCGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGgcggcg > 1:7006586/1‑140 (MQ=255) gTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTg < 2:10726992/140‑1 (MQ=255) gTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTg < 2:171701/140‑1 (MQ=255) ctctCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGgcg < 1:6683562/140‑1 (MQ=255) tctcCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGgcgc > 1:9486569/1‑140 (MQ=255) ctcCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCt < 1:11608604/140‑1 (MQ=255) ctcCTTTCTGAGAAATCAAATTACCGCGGAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCt < 2:10055741/140‑1 (MQ=255) tttGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATTTT‑TT‑T‑TGCAACATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCAt > 2:7883960/1‑140 (MQ=255) ttGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATc < 2:3736213/140‑1 (MQ=255) ttGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATc < 2:957539/140‑1 (MQ=255) ttGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATc < 2:5650742/140‑1 (MQ=255) ttGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATc < 2:9086283/140‑1 (MQ=255) ttGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATc < 1:1543275/140‑1 (MQ=255) ttGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATc < 2:6071828/140‑1 (MQ=255) ttGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATc < 2:6575052/140‑1 (MQ=255) tgtgAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGcc > 1:5331323/1‑103 (MQ=255) tgtgAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGcc < 2:5331322/103‑1 (MQ=255) tgtgAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATcc > 1:1775411/1‑140 (MQ=255) tgtgAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATcc > 1:1042668/1‑140 (MQ=255) tgAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTg > 1:11477362/1‑140 (MQ=255) agaAATCAAATTCCCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑A‑TTT‑TT‑TGTGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGtt < 2:8226478/140‑1 (MQ=255) agaAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGtt < 2:10530243/140‑1 (MQ=255) agaAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGtg > 1:4886687/1‑139 (MQ=255) actCAACTTACCGCGGAGTGCACCCGAAGCGCCATCGTGCATGGTTTTTGCGAAAACAACGGTC‑ATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTa < 2:4719308/138‑1 (MQ=255) cAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAAc < 1:9813280/140‑1 (MQ=255) cAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAAc < 1:685213/140‑1 (MQ=255) aaTTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCg < 1:5030714/140‑1 (MQ=255) aaTTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCg < 2:939985/140‑1 (MQ=255) ttACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGcc < 1:1060281/140‑1 (MQ=255) tACCGCGTCGTGAAACCGACGCGCCCTCGTGCCTGGATTTGGCGAAATCAACGGTC‑A‑TTTGTT‑T‑TGCATCATCGGGTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGccc < 2:10673336/140‑1 (MQ=255) aCCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGcc > 1:10722485/1‑87 (MQ=255) cgTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTc < 2:6909437/140‑1 (MQ=255) gTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCa < 1:9980008/140‑1 (MQ=255) aaaCCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGcc < 2:3631208/140‑1 (MQ=255) aaaCCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGcc < 2:5207756/140‑1 (MQ=255) aaaCCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGcc < 1:9116767/140‑1 (MQ=255) aaaCCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGcc < 1:8919565/140‑1 (MQ=255) aaaCCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGcc < 1:7756003/140‑1 (MQ=255) aaCCGAAGCGCCCACGTTCATGGTTTTTGCGAAATCAACGGTC‑ATTTT‑TT‑T‑TGCATCATAGGTACCGCGATAGCCATCTTCTATTGCTTGATGCGGCGGTGGCGCTGCATCCTGTGTTAAACCGCACTGGTCATCTGCCa < 2:11157651/140‑1 (MQ=255) aaCCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCACCGGTC‑ATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCGAGTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCa < 2:3921839/140‑1 (MQ=255) aaCCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCa < 1:10951767/140‑1 (MQ=255) aaCCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCa < 2:4931854/140‑1 (MQ=255) aaCCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCa < 2:5068295/140‑1 (MQ=255) aaCCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCNATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCa < 1:6309788/140‑1 (MQ=255) gAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCAACGc > 2:1870170/1‑140 (MQ=255) caGCGCCATCGGGCATGGTTTTTGCGAAATCAACGGTC‑A‑TTTATT‑T‑TGCATCATCGGTTCCGCGATAGCCATCGTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCAACGCa < 1:10273502/139‑1 (MQ=255) aagagagaTCGTGCATGGTTTGTGCGAATTCAACGGTC‑A‑TTT‑TT‑TGTGCATCATCGGGTCCGCGATTGCCTTATTCTATTGCATGTGTAGGCGGTGGCGCTTCATCCTGTTTTAAACCGCCCGGGTCATCTGCCAACGCa < 2:8089043/133‑1 (MQ=255) aaGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCAACGCa < 1:3529739/140‑1 (MQ=255) aaGCGCCATCGTGCATGGTTTGTGCGAAATCAACGGTC‑ATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCAACGCa < 2:7386516/140‑1 (MQ=255) aaGCGCCATCGTGCATGGTTTGTGCGAAATCAACGGTC‑ATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCAACGCa < 2:5867138/140‑1 (MQ=255) tCGTGCATGGTTTTTGCGAAATCAACGGTC‑ATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCAACGCATAAGGCAt < 2:10062421/140‑1 (MQ=255) tCGTGCATGGTTTTTGCGAAATCAACGGTC‑A‑TTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCAACGCATAAGGCATg > 1:3810446/1‑140 (MQ=255) tttttGCGAAATCAACGGTCAA‑TTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCAACGCATAAGGCATGACAAGaaaa < 2:3780065/140‑1 (MQ=255) tttttGCGAAATCAACGGTC‑ATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCAACGCATAAGGCATGACAAGaaaa < 2:5962172/140‑1 (MQ=255) tttttGCGAAATCAACGGTC‑ATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCAACGCATAAGGCATGACAAGaaaa > 1:1924118/1‑140 (MQ=255) tttttGCGAAATCAACGGTC‑ATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCAACGCATAAGGCATGACAAGaaaa < 2:1204827/140‑1 (MQ=255) tttttGCGAAATCAACGGTC‑ATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCAACGCATAAGGCATGACAAGaaaa < 1:2224082/140‑1 (MQ=255) tttttGCGAAATCAACGGTC‑ATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCAACGCATAAGGCATGACAAGaaaa < 2:725233/140‑1 (MQ=255) tttttGCGAAATCAACGGTC‑ATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCAACGCATAAGGCATGACAAGaaaa < 1:419606/140‑1 (MQ=255) tttttGCGAAATCAACGGTC‑ATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCAACGCATAAGGCATGACAAGaaaa < 2:8629874/140‑1 (MQ=255) tttttGCGAAATCAACGGTC‑ATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCAACGCATAAGGCATGACAAGaaaa < 1:2956106/140‑1 (MQ=255) atattGCGAAATCCACGCTC‑ATTTT‑TT‑T‑TGCAACATCGGTTCCGCGATAGCCATCTTCTATTGCAAGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGACCTGGTCATCTGCCAACGCATAAGGCATGACAAGaaaa < 2:4488756/137‑1 (MQ=255) tttGCGAAATCAACGGTC‑ATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAg > 1:5444676/1‑48 (MQ=255) tttGCGAAATCAACGGTC‑ATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCAACGCATAAGGCATGACAAGAAAACt < 1:1121315/140‑1 (MQ=255) tttGCGAAATCAACGGTC‑ATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCAACGCATAAGGCATGACAAGAAAACt < 2:1456482/140‑1 (MQ=255) tttGCGAAATCAACGGTC‑ATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCAACGCATAAGGCATGACAAGAAAACt < 1:4290857/140‑1 (MQ=255) ttGCGAAATCAACGGTC‑ATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCAACGCATAAGGCATGACAAGAAAACtt > 2:4388129/1‑140 (MQ=255) ttGCGAAATCAACGGTC‑ATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCAACGCATAAGGCATGACAAGAAAACtt < 1:4459270/140‑1 (MQ=255) tGCGAAATCAACGGTC‑ATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCAACGCATAAGGCATGACAAGAAAACTTg > 1:3150182/1‑140 (MQ=255) gCGAAATCAACGGTC‑A‑TTT‑TTAT‑AGCATCATAGGTTCCGCGATAGCAATATTCTATTGCATGAGGCGGCGGTGGATCTGCAGCCTGATTTCAACCGCCCTGGTCATCTGCCAACGCATAAGTAATGACAATAAAACTTGc < 2:9820133/140‑1 (MQ=255) aTCAACGGTC‑ATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCAACGCATAAGGCATGACAAGAAAACTTGCTAATa > 1:10937958/1‑140 (MQ=255) aTCAACGGTC‑ATTTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCAACGCATAAGGCATGACAAGAAAACTGGCTAATa > 2:6264727/1‑140 (MQ=255) c‑A‑TAT‑TT‑T‑TGCATCATCGGTTCCCCGATAGCCATCTTCTATTGCATGAGGCCGCGGTCGCGCTGCATCCTCTTATAAACCGCCCCGGACATCTGCCAACGCAAAAGGCATGACAAGAAAACGTGCTAATACAACCGCCTg < 2:2934090/140‑1 (MQ=255) | GCCGCAGGAATAACGACATTAATTTCACCGCTCTTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTC‑A‑TTT‑TT‑T‑TGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCAACGCATAAGGCATGACAAGAAAACTTGCTAATACAATGGCCTG > NZ_CP025268/1629034‑1629307 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |