BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NZ_CP025268	1,879,869	(C)_5→6	pseudogene (521/821 nt)	nimR ←	DNA‑binding transcriptional regulator NimR

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NZ_CP025268	1,879,864	1	.	C	98.2%	1921.3 / 22.5	559	pseudogene (526/821 nt)	nimR	DNA‑binding transcriptional regulator NimR
Reads supporting (aligned to +/- strand): ref base . (7/3); new base C (276/272); total (284/275)
Fisher's exact test for biased strand distribution p-value = 3.40e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 643 total aligned reads displayed.

GCCTTTCACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TG‑C‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAACAGGACCTGAATTAATCTGCGGG  >  NZ_CP025268/1879725‑1879998

 ccTTTCACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TG‑c                                                                                                                                        >  2:2885193/1‑140 (MQ=255)

 ccTTTCACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TG‑c                                                                                                                                        >  1:1901145/1‑140 (MQ=255)

 ccTTTCACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACCCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TG‑c                                                                                                                                        >  1:4575418/1‑140 (MQ=255)

 ccTTTCACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCGTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TG‑c                                                                                                                                        >  2:9607636/1‑140 (MQ=255)

  cTTTCACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TG‑c‑c                                                                                                                                      <  2:2625796/140‑1 (MQ=255)

    ttCACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TG‑c‑ccc                                                                                                                                    >  2:426143/1‑140 (MQ=255)

    ttCACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TG‑c‑ccc                                                                                                                                    >  2:5236097/1‑140 (MQ=255)

      cACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TG‑c‑ccccc                                                                                                                                  >  1:10204195/1‑139 (MQ=255)

      cACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TG‑c‑ccccc                                                                                                                                  >  1:5289883/1‑139 (MQ=255)

      cACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TG‑c‑ccccc                                                                                                                                  >  1:1181846/1‑139 (MQ=255)

      cACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TG‑c‑ccccc                                                                                                                                  >  2:8033577/1‑139 (MQ=255)

       aCTAATCCCTGAAGCGCCATACTCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TG‑c‑ccccca                                                                                                                                 <  1:4265874/140‑3 (MQ=255)

       aCTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TG‑c‑ccccca                                                                                                                                 <  2:11389312/140‑3 (MQ=255)

       aCTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TG‑c‑ccccca                                                                                                                                 <  1:3798980/140‑3 (MQ=255)

       aCTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACACAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TG‑c‑ccccca                                                                                                                                 <  1:10543736/140‑3 (MQ=255)

           aTCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCg                                                                                                                              >  1:86628/1‑140 (MQ=255)

           aTCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCg                                                                                                                              >  1:983456/1‑140 (MQ=255)

           aTCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCg                                                                                                                              >  1:8279646/1‑140 (MQ=255)

           aTCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCg                                                                                                                              >  1:739079/1‑140 (MQ=255)

           aTCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCg                                                                                                                              >  1:3396873/1‑140 (MQ=255)

           aTCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TG‑c‑cccccacgcg                                                                                                                             >  2:4896037/1‑134 (MQ=255)

                  caGCGCCATTATCAGCTGTAACTGCTGACGGCACTGGCGAAAACTCAACCCCGTCTCTTTTACGATCAGTCGGGCAAGATTGCGGTCACTCCTCGCGGAAAAGCCAGCCCGTGGCCCCAA‑TGCC‑CCCCACTCGACAGGcc                                                                                                                       >  2:5807940/2‑140 (MQ=255)

                  aaGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGcc                                                                                                                       >  1:2281974/1‑140 (MQ=255)

                     cgcCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCtt                                                                                                                    >  2:10126183/1‑140 (MQ=255)

                     cgcCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCtt                                                                                                                    >  1:750682/1‑140 (MQ=255)

                     cgcCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCtt                                                                                                                    <  1:10040958/140‑1 (MQ=255)

                        cATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCg                                                                                                                 <  1:7976490/140‑1 (MQ=255)

                           aaTCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAGAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCca                                                                                                              <  1:9983542/140‑1 (MQ=255)

                           aaTCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCca                                                                                                              <  2:2223074/140‑1 (MQ=255)

                             tCAGCTGTAACTGCTGACGCCACTGTCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCcatc                                                                                                            <  2:6417017/140‑1 (MQ=255)

                             tCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCcatc                                                                                                            <  1:9676490/140‑1 (MQ=255)

                             tCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCcatc                                                                                                            <  1:8173835/140‑1 (MQ=255)

                                 cTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCCATCAtct                                                                                                        >  2:1761338/1‑140 (MQ=255)

                                          ctgACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTTCGTTCACTCATCGCAAAAAAGCCAGCCCATTGACCCAA‑TGCC‑CCCCACTCGACAGTCCCTTTCTCCATCATCTCCACCATCg                                                                                               >  1:658851/1‑140 (MQ=255)

                                          ctgACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCg                                                                                               >  1:1663545/1‑140 (MQ=255)

                                           tgACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGt                                                                                              >  2:9756051/1‑140 (MQ=255)

                                           tgACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGACCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGt                                                                                              >  1:10796707/1‑140 (MQ=255)

                                            gACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTg                                                                                             <  2:6806391/140‑1 (MQ=255)

                                                       cGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAgg                                                                                  >  1:3601574/1‑140 (MQ=255)

                                                                aaCCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGagaaga                                                                         <  2:11162468/140‑1 (MQ=255)

                                                                 aCCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAgaagaa                                                                        <  2:1643237/140‑1 (MQ=255)

                                                                  ccccGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGaaa                                                                       <  1:8857350/140‑1 (MQ=255)

                                                                    ccGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACg                                                                     >  1:5971982/1‑140 (MQ=255)

                                                                     cGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGAGTTTAGGATGAGAAGAAACgg                                                                    >  2:3740684/1‑140 (MQ=255)

                                                                     cGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TG‑CACCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACgg                                                                    >  1:5485973/1‑140 (MQ=255)

                                                                       tctcTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGc                                                                  <  1:9063916/140‑1 (MQ=255)

                                                                           ttttACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAACAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGt                                                              <  2:2418771/140‑1 (MQ=255)

                                                                              tACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCa                                                           <  1:4175634/140‑1 (MQ=255)

                                                                                cTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGc                                                         >  1:5632184/1‑140 (MQ=255)

                                                                                cTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGc                                                         <  1:850065/140‑1 (MQ=255)

                                                                                   tCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGcc                                                                                                               <  2:1411793/83‑1 (MQ=255)

                                                                                   tCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGcc                                                                                                               >  1:1410217/1‑83 (MQ=255)

                                                                                   tCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCtgt                                                      >  1:5138085/1‑140 (MQ=255)

                                                                                   tCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCtgt                                                      >  2:4758731/1‑140 (MQ=255)

                                                                                   tCAGTCGGGAAAGATTGCGTTCACTCTTCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGTCGGTCCCTTTCGCCATCATCTCCACCTGCGTGCGGATTTTCGGATGAGACGAACCGGGCAGGTGCAGCtgt                                                      >  2:829084/1‑140 (MQ=255)

                                                                                     aGTCGGGCAAGATTGCGTTCACTCATCGCACAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGCCTGGCCCTGTCGCCATCATCTCCACCATCGTGCGGCTTTGAGGAGGAGTAGAAGCGGGCCGGTGCAGCggttg                                                    >  2:3578657/1‑140 (MQ=255)

                                                                                     aGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCca                                                                                                              <  1:7640723/82‑1 (MQ=255)

                                                                                     aGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCtgttg                                                    >  2:7257649/1‑140 (MQ=255)

                                                                                     aGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCtgttg                                                    >  2:10334755/1‑140 (MQ=255)

                                                                                       tCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCtgttgtt                                                  >  1:4944787/1‑140 (MQ=255)

                                                                                       tCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCtgttgtt                                                  >  2:7125784/1‑140 (MQ=255)

                                                                                         gggCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCtgttgttgt                                                <  2:7303598/140‑1 (MQ=255)

                                                                                            ccaGATTGCGTTCCCTCATCGCAAAAAAGCCAGCCCAGCGCCCCAC‑TGCC‑CCCCACTCGACAGGCCCATTCGCCCTCATCTCCCCCCTCGTGCGGATGAGAGGAGGCGAAGAACCGGGCAGGTGCCGCTGTTGTTGGGgc                                             <  2:6040948/138‑1 (MQ=255)

                                                                                            cAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGgc                                             <  2:3414410/140‑1 (MQ=255)

                                                                                            cAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGgc                                             <  2:3101879/140‑1 (MQ=255)

                                                                                            cAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGgc                                             <  1:9421783/140‑1 (MQ=255)

                                                                                                  tGCGTTCACTCATCGCAAAAAACCCAGCCCATTGCCCCAA‑CGCC‑CCCCACTCGACACGCCCATACGCCATCATCTCCACCATCGTGCGGATTTTAGGAAGAGAAGAAACGGGCAGGTGCAGCTGTTGTAGTGGCTGCTGa                                       <  2:4545917/140‑1 (MQ=255)

                                                                                                      ttCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGa                                   <  1:10296642/140‑1 (MQ=255)

                                                                                                      ttCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGa                                   <  1:4416606/140‑1 (MQ=255)

                                                                                                      ttCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGa                                   <  1:6744339/140‑1 (MQ=255)

                                                                                                         aCTCATCGCAAAAAAGCCCGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACCGGCCCTTTCGCCAACATCTCCACCCTCGGGCGCATGTTAGGATGGGCAGAAACGGGCCGGAGCAGCTGTTGGTGTGGCGGCggagggaggt                                >  2:10904911/1‑138 (MQ=255)

                                                                                                         aCTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGtt                                >  2:9127427/1‑140 (MQ=255)

                                                                                                          cTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTtc                               >  1:11292739/1‑140 (MQ=255)

                                                                                                          cTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTtc                               >  1:274867/1‑140 (MQ=255)

                                                                                                              tCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCCCTCGACAGGCCCTTTCGCCATCAACTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTtcatca                           >  2:10561435/1‑140 (MQ=255)

                                                                                                              tCGCAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTtcatca                           >  1:6436076/1‑140 (MQ=255)

                                                                                                               cGCAAAAAAGCCAGCCCATTGCCCCAATTC‑C‑CCCCACTCGACAGGCCCTTTAGCCATCATCTCCACCATCGTGCGGATTTTAGGGTGAGAAGAAACGGGCCGGTGCAGATGTTGTTGTGGCTGCTGAGGGAGTTCATCaa                          >  2:1311392/1‑140 (MQ=255)

                                                                                                                gCAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCaaa                         <  1:5853726/140‑1 (MQ=255)

                                                                                                                gCAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCaaa                         <  2:1128668/140‑1 (MQ=255)

                                                                                                                 cAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCCTCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAAc                        <  2:861517/140‑1 (MQ=255)

                                                                                                                 cAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAAc                        <  2:9371169/140‑1 (MQ=255)

                                                                                                                 cAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAAc                        <  1:2995972/140‑1 (MQ=255)

                                                                                                                 cAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAAc                        <  1:11099360/140‑1 (MQ=255)

                                                                                                                 cAAAAAAGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAAc                        <  2:5419557/140‑1 (MQ=255)

                                                                                                                  aaaaaaGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAACa                       <  2:7582091/140‑1 (MQ=255)

                                                                                                                   caccagccagccCAGTGCCCCTA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCCTTCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGTAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGATGGAGTTCATCACACAg                      <  2:4009418/136‑1 (MQ=255)

                                                                                                                      aaGCCAGCCCATTGCCCCAA‑TGCC‑CCCCCCTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAACAGGAc                   <  1:2609874/140‑1 (MQ=255)

                                                                                                                      aaGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAACAGGAc                   <  1:11374209/140‑1 (MQ=255)

                                                                                                                      aaGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAACAGGAc                   <  1:6200898/140‑1 (MQ=255)

                                                                                                                      aaGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAACAGGAc                   <  1:1521204/140‑1 (MQ=255)

                                                                                                                      aaGCCAGCCCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAACAGGAc                   <  1:3227147/140‑1 (MQ=255)

                                                                                                                       agccagccCATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAACAGGAcc                  >  2:773518/1‑140 (MQ=255)

                                                                                                                              ccATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAACAGGACCTGAATTa           <  1:9242481/140‑1 (MQ=255)

                                                                                                                              ccATTGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGATGTTGTTGTGGCTGCTGAGGGAGTTCATCAAACAGGACCTGAATTa           >  1:7881472/1‑140 (MQ=255)

                                                                                                                                  tGCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAACAGGACCTGAATTAATCt       <  2:10392816/140‑1 (MQ=255)

                                                                                                                                   gCCCCAC‑TGCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAACAGGACCTGAATTAATCTg      <  2:10755090/140‑1 (MQ=255)

                                                                                                                                   gCCCCAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTTTGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAACAGGACCTGAATTAATCTg      <  1:5744287/140‑1 (MQ=255)

                                                                                                                                    ccccAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAACAGGACCTGAATTAATCTGc     <  1:6961319/140‑1 (MQ=255)

                                                                                                                                    ccccAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAACAGGACCTGAATTAATCTGc     <  1:4804671/140‑1 (MQ=255)

                                                                                                                                      ccAA‑TGCC‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAACAGGACCTGAATTAATCTGCgg   <  1:7105025/140‑1 (MQ=255)

GCCTTTCACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAA‑TG‑C‑CCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAACAGGACCTGAATTAATCTGCGGG  >  NZ_CP025268/1879725‑1879998

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`